Family: Coronavirus S2 glycoprotein

Pfam 01601

Lineage:

1. Root: scop
2. Class: Coiled coil proteins [57942]
   Not a true class
3. Fold: Stalk segment of viral fusion proteins [58063]
   core: trimeric coiled coil
4. Superfamily: Coronavirus S2 glycoprotein [111474]
   uperfamily
5. Family: Coronavirus S2 glycoprotein [111475]
   Pfam 01601

Protein Domains:

1. E2 spike glycoprotein [111476]
   1. Murine hepatitis virus, MHV [TaxId: 11138] [111477] (2)
      SQ P11224 969-1024,1224-1254
      1. 1wdg
         1. chain a [109248]
         2. chain b [109249]
      2. 1wdf
         1. chain a [109246]
         2. chain b [109247]
   2. Human coronavirus (strain SARS) [TaxId: 227859] [111478] (20)
      SQ P59594 896-972,1142-1183
      SQ Q6UZF0 914-949,1148-1193
      1. 1zva
         1. region a:1-75 [125701]
      2. 1zvb
         1. region a:1-34 [125702]
      3. 1zv7
         1. region a:1-38 [125692]
      4. 1zvb
         automatically matched to 1ZVB A:1-34
         1. region b:2-34 [125703]
      5. 1zvb
         automatically matched to 1ZVB A:1-34
         1. region c:1-34 [125704]
      6. 1zv7
         automatically matched to 1ZV7 A:1-38
         1. region b:4-36 [125693]
      7. 2beq
         1. chain a,d [116703]
         2. chain b,e [116704]
         3. chain c,f [116705]
      8. 2bez
         1. chain c,f [116716]
      9. 1zv8
         1. region a:1-49,b:5-31 [125694]
      10. 1zv8
          1. region c:2-47,d:5-33 [125695]
      11. 1zv8
          1. region e:1-49,f:4-33 [125696]
      12. 1zv8
          1. region g:1-50,h:1-34 [125697]
      13. 1zv8
          1. region i:1-49,j:4-33 [125698]
      14. 1zv8
          1. region k:1-50,l:3-36 [125699]
      15. 1wyy
          1. region a:890-973,a:1147-1188 [121469]
      16. 1wyy
          automatically matched to 1WYY A:890-973,A:1147-1188
          1. region b:892-973,b:1147-1188 [121470]
      17. 1wnc
          1. chain a [109428]
          2. chain b [109429]
          3. chain c [109430]
          4. chain d [109431]
          5. chain e [109432]
          6. chain f [109433]
      18. 2fxp
          1. region a:2-55 [134332]
      19. 2fxp
          automatically matched to 2FXP A:2-55
          1. region b:2-55 [134333]
      20. 2fxp
          automatically matched to 2FXP A:2-55
          1. region c:2-55 [134334]

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk