Fold: RNA polymerase

Lineage:

1. Root: scop
2. Class: Low resolution protein structures [58117]
   Not a true class
3. Fold: RNA polymerase [58180]

Superfamilies:

1. RNA polymerase [58181] (1)
   uperfamily
   1. RNA polymerase [58182] (3)
      1. DNA-directed RNA polymerase alpha(2), beta, beta-prime and omega subunits [58183]
         1. Thermus aquaticus [TaxId: 271] [58184] (3)
            1. 1l9u
               holoenzyme at 4 Angstrom resolution
               1. chain a [73748]
               2. chain b [73749]
               3. chain j [73754]
               4. chain k [73755]
               5. chain c [73750]
               6. chain l [73756]
               7. chain d [73751]
               8. chain m [73757]
               9. chain e [73752]
               10. chain n [73758]
               11. chain h [73753]
               12. chain q [73759]
            2. 1hqm
               1. chain a [45972]
               2. chain b [45973]
               3. chain c [45974]
               4. chain d [45975]
               5. chain e [45976]
            3. 1l9z
               holoenzyme/fork-junction promoter DNA complex at 6.5 Angstrom resolution
               1. chain a [73766]
               2. chain b [73767]
               3. chain c [73768]
               4. chain d [73769]
               5. chain e [73770]
               6. chain h [73771]
         2. Thermus thermophilus [TaxId: 274] [161285] (1)
            1. 2o5i
               automatically matched to d1hqme_
               complexed with mg, zn
               1. region e:2-96 [148602]
      2. Complete 12-subunit RNA polymerase II complex [90261]
         1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [90262] (38)
            1. 3cqz
               automatically matched to d1wcma_
               complexed with ilx, trx, zn
               1. region a:6-1450 [156929]
            2. 3cqz
               automatically matched to d1wcmk_
               complexed with ilx, trx, zn
               1. region k:2-114 [156934]
            3. 2r7z
               automatically matched to d1wcma_
               complexed with cpt, mg, zn
               1. region a:2-1455 [151658]
            4. 2r7z
               automatically matched to d1y1vd_
               complexed with cpt, mg, zn
               1. region d:4-221 [151660]
            5. 2r7z
               automatically matched to d1wcmg_
               complexed with cpt, mg, zn
               1. region g:1-171 [151662]
            6. 2r7z
               automatically matched to d1wcmk_
               complexed with cpt, mg, zn
               1. region k:1-114 [151665]
            7. 2r92
               automatically matched to d1wcma_
               complexed with mg, zn
               1. region a:2-1455 [151745]
            8. 2r92
               automatically matched to d1y1vd_
               complexed with mg, zn
               1. region d:4-221 [151747]
            9. 2r92
               automatically matched to d1wcmg_
               complexed with mg, zn
               1. region g:1-171 [151749]
            10. 2r92
                automatically matched to d1wcmk_
                complexed with mg, zn
                1. region k:1-112 [151752]
            11. 2r93
                automatically matched to d1wcma_
                complexed with mg, zn
                1. region a:2-1455 [151754]
            12. 2r93
                automatically matched to d1y1vd_
                complexed with mg, zn
                1. region d:4-221 [151756]
            13. 2r93
                automatically matched to d1wcmg_
                complexed with mg, zn
                1. region g:1-171 [151758]
            14. 2r93
                automatically matched to d1wcmk_
                complexed with mg, zn
                1. region k:1-112 [151761]
            15. 2vum
                automatically matched to d1wcma_
                complexed with bru, ilx, mg, trx, zn
                1. region a:2-1455 [153548]
            16. 2vum
                automatically matched to d1y1vd_
                complexed with bru, ilx, mg, trx, zn
                1. region d:4-221 [153550]
            17. 2vum
                automatically matched to d1wcmg_
                complexed with bru, ilx, mg, trx, zn
                1. region g:1-171 [153552]
            18. 2vum
                automatically matched to d1wcmk_
                complexed with bru, ilx, mg, trx, zn
                1. region k:1-114 [153555]
            19. 2b63
                low resulution structure
                complexed with 5bu, mg, zn
                1. region g:1-79 [127925]
            20. 2b63
                low resulution structure
                complexed with 5bu, mg, zn
                1. region d:15-75 [127921]
            21. 2ja7
                automatically matched to 2B63 D:15-75
                complexed with bru, mg, tt, zn
                1. region d:15-75 [138194]
            22. 2ja7
                automatically matched to 2B63 D:15-75
                complexed with bru, mg, tt, zn
                1. region p:15-75 [138210]
            23. 1wcm
                1. chain a [114510]
                2. chain b [114511]
                3. chain c [114512]
                4. chain d [114513]
                5. chain e [114514]
                6. chain f [114515]
                7. chain g [114516]
                8. chain h [114517]
                9. chain i [114518]
                10. chain j [114519]
                11. chain k [114520]
                12. chain l [114521]
            24. 2ja5
                automatically matched to 2B63 D:15-75
                complexed with bru, mg, zn
                1. region d:15-75 [138162]
            25. 2ja8
                automatically matched to 2B63 D:15-75
                complexed with bru, mg, tt, zn
                1. region d:15-75 [138226]
            26. 1y1w
                1. chain a [116362]
                2. chain b [116363]
                3. chain c [116364]
                4. chain d [116365]
                5. chain e [116366]
                6. chain f [116367]
                7. chain g [116368]
                8. chain h [116369]
                9. chain i [116370]
                10. chain j [116371]
                11. chain k [116372]
                12. chain l [116373]
            27. 2b8k
                automatically matched to 2B63 D:15-75
                complexed with zn
                1. region d:15-75 [128080]
            28. 1pqv
                complexed with transcription elongation factor S-II
                1. chain a [95028]
                2. chain b [95029]
                3. chain c [95030]
                4. chain d [95031]
                5. chain e [95032]
                6. chain f [95033]
                7. chain g [95034]
                8. chain h [95035]
                9. chain i [95036]
                10. chain j [95037]
                11. chain k [95038]
                12. chain l [95039]
                13. chain s [95040]
            29. 1y1v
                1. chain a [116349]
                2. chain b [116350]
                3. chain c [116351]
                4. chain d [116352]
                5. chain e [116353]
                6. chain f [116354]
                7. chain g [116355]
                8. chain h [116356]
                9. chain i [116357]
                10. chain j [116358]
                11. chain k [116359]
                12. chain l [116360]
                13. chain s [116361]
            30. 2ja6
                automatically matched to 2B63 D:15-75
                complexed with bru, mg, tt, zn
                1. region d:15-75 [138178]
            31. 1nt9
                1. chain a [86151]
                2. chain b [86152]
                3. chain c [86153]
                4. chain d [86154]
                5. chain e [86155]
                6. chain f [86156]
                7. chain g [86157]
                8. chain h [86158]
                9. chain i [86159]
                10. chain j [86160]
                11. chain k [86161]
                12. chain l [86162]
            32. 1nik
                1. chain a [85743]
                2. chain b [85744]
                3. chain c [85745]
                4. chain d [85746]
                5. chain e [85747]
                6. chain f [85748]
                7. chain g [85749]
                8. chain h [85750]
                9. chain i [85751]
                10. chain j [85752]
                11. chain k [85753]
                12. chain l [85754]
            33. 1y1y
                1. chain a [116376]
                2. chain b [116377]
                3. chain c [116378]
                4. chain d [116379]
                5. chain e [116380]
                6. chain f [116381]
                7. chain g [116382]
                8. chain h [116383]
                9. chain i [116384]
                10. chain j [116385]
                11. chain k [116386]
                12. chain l [116387]
                13. chain s [116388]
            34. 1r9s
                1. chain a [111729]
                2. chain b [111730]
                3. chain c [111731]
                4. chain e [111732]
                5. chain f [111733]
                6. chain h [111734]
                7. chain i [111735]
                8. chain j [111736]
                9. chain k [111737]
                10. chain l [111738]
            35. 1y77
                1. chain a [116512]
                2. chain b [116513]
                3. chain c [116514]
                4. chain d [116515]
                5. chain e [116516]
                6. chain f [116517]
                7. chain g [116518]
                8. chain h [116519]
                9. chain i [116520]
                10. chain j [116521]
                11. chain k [116522]
                12. chain l [116523]
            36. 1r5u
                complexed with transcription elongation factor TFIIB
                1. chain a [97105]
                2. chain b [97106]
                3. chain c [97107]
                4. chain e [97108]
                5. chain f [97109]
                6. chain h [97110]
                7. chain i [97111]
                8. chain j [97112]
                9. chain k [97113]
                10. chain l [97114]
                11. chain m [97115]
            37. 1r9t
                1. chain a [111739]
                2. chain b [111740]
                3. chain c [111741]
                4. chain e [111742]
                5. chain f [111743]
                6. chain h [111744]
                7. chain i [111745]
                8. chain j [111746]
                9. chain k [111747]
                10. chain l [111748]
            38. 1sfo
                strand separated elongation complex
                1. chain a [98834]
                2. chain b [98835]
                3. chain c [98836]
                4. chain e [98837]
                5. chain f [98838]
                6. chain h [98839]
                7. chain i [98840]
                8. chain j [98841]
                9. chain k [98842]
                10. chain l [98843]

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk