Structural Classification of Proteins

Superfamily: RNA polymerase

: uperfamily

Lineage:

Root: scop
Class: Low resolution protein structures [58117]
Not a true class
Fold: RNA polymerase [58180]
Superfamily: RNA polymerase [58181]
uperfamily

Families:

RNA polymerase [58182] (3)
1. DNA-directed RNA polymerase alpha(2), beta, beta-prime and omega subunits [58183]
  1. Thermus aquaticus [TaxId: 271] [58184] (3)
    1. 1l9u
      holoenzyme at 4 Angstrom resolution
      1. chain a [73748]
      2. chain b [73749]
      3. chain j [73754]
      4. chain k [73755]
      5. chain c [73750]
      6. chain l [73756]
      7. chain d [73751]
      8. chain m [73757]
      9. chain e [73752]
      10. chain n [73758]
      11. chain h [73753]
      12. chain q [73759]
    2. 1hqm
      1. chain a [45972]
      2. chain b [45973]
      3. chain c [45974]
      4. chain d [45975]
      5. chain e [45976]
    3. 1l9z
      holoenzyme/fork-junction promoter DNA complex at 6.5 Angstrom resolution
      1. chain a [73766]
      2. chain b [73767]
      3. chain c [73768]
      4. chain d [73769]
      5. chain e [73770]
      6. chain h [73771]
  2. Thermus thermophilus [TaxId: 274] [161285] (1)
    1. 2o5i
      automatically matched to d1hqme_
      complexed with mg, zn
      1. region e:2-96 [148602]
2. Complete 12-subunit RNA polymerase II complex [90261]
  1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [90262] (38)
    1. 3cqz
      automatically matched to d1wcma_
      complexed with ilx, trx, zn
      1. region a:6-1450 [156929]
    2. 3cqz
      automatically matched to d1wcmk_
      complexed with ilx, trx, zn
      1. region k:2-114 [156934]
    3. 2r7z
      automatically matched to d1wcma_
      complexed with cpt, mg, zn
      1. region a:2-1455 [151658]
    4. 2r7z
      automatically matched to d1y1vd_
      complexed with cpt, mg, zn
      1. region d:4-221 [151660]
    5. 2r7z
      automatically matched to d1wcmg_
      complexed with cpt, mg, zn
      1. region g:1-171 [151662]
    6. 2r7z
      automatically matched to d1wcmk_
      complexed with cpt, mg, zn
      1. region k:1-114 [151665]
    7. 2r92
      automatically matched to d1wcma_
      complexed with mg, zn
      1. region a:2-1455 [151745]
    8. 2r92
      automatically matched to d1y1vd_
      complexed with mg, zn
      1. region d:4-221 [151747]
    9. 2r92
      automatically matched to d1wcmg_
      complexed with mg, zn
      1. region g:1-171 [151749]
    10. 2r92
      automatically matched to d1wcmk_
      complexed with mg, zn
      1. region k:1-112 [151752]
    11. 2r93
      automatically matched to d1wcma_
      complexed with mg, zn
      1. region a:2-1455 [151754]
    12. 2r93
      automatically matched to d1y1vd_
      complexed with mg, zn
      1. region d:4-221 [151756]
    13. 2r93
      automatically matched to d1wcmg_
      complexed with mg, zn
      1. region g:1-171 [151758]
    14. 2r93
      automatically matched to d1wcmk_
      complexed with mg, zn
      1. region k:1-112 [151761]
    15. 2vum
      automatically matched to d1wcma_
      complexed with bru, ilx, mg, trx, zn
      1. region a:2-1455 [153548]
    16. 2vum
      automatically matched to d1y1vd_
      complexed with bru, ilx, mg, trx, zn
      1. region d:4-221 [153550]
    17. 2vum
      automatically matched to d1wcmg_
      complexed with bru, ilx, mg, trx, zn
      1. region g:1-171 [153552]
    18. 2vum
      automatically matched to d1wcmk_
      complexed with bru, ilx, mg, trx, zn
      1. region k:1-114 [153555]
    19. 2b63
      low resulution structure
      complexed with 5bu, mg, zn
      1. region g:1-79 [127925]
    20. 2b63
      low resulution structure
      complexed with 5bu, mg, zn
      1. region d:15-75 [127921]
    21. 2ja7
      automatically matched to 2B63 D:15-75
      complexed with bru, mg, tt, zn
      1. region d:15-75 [138194]
    22. 2ja7
      automatically matched to 2B63 D:15-75
      complexed with bru, mg, tt, zn
      1. region p:15-75 [138210]
    23. 1wcm
      1. chain a [114510]
      2. chain b [114511]
      3. chain c [114512]
      4. chain d [114513]
      5. chain e [114514]
      6. chain f [114515]
      7. chain g [114516]
      8. chain h [114517]
      9. chain i [114518]
      10. chain j [114519]
      11. chain k [114520]
      12. chain l [114521]
    24. 2ja5
      automatically matched to 2B63 D:15-75
      complexed with bru, mg, zn
      1. region d:15-75 [138162]
    25. 2ja8
      automatically matched to 2B63 D:15-75
      complexed with bru, mg, tt, zn
      1. region d:15-75 [138226]
    26. 1y1w
      1. chain a [116362]
      2. chain b [116363]
      3. chain c [116364]
      4. chain d [116365]
      5. chain e [116366]
      6. chain f [116367]
      7. chain g [116368]
      8. chain h [116369]
      9. chain i [116370]
      10. chain j [116371]
      11. chain k [116372]
      12. chain l [116373]
    27. 2b8k
      automatically matched to 2B63 D:15-75
      complexed with zn
      1. region d:15-75 [128080]
    28. 1pqv
      complexed with transcription elongation factor S-II
      1. chain a [95028]
      2. chain b [95029]
      3. chain c [95030]
      4. chain d [95031]
      5. chain e [95032]
      6. chain f [95033]
      7. chain g [95034]
      8. chain h [95035]
      9. chain i [95036]
      10. chain j [95037]
      11. chain k [95038]
      12. chain l [95039]
      13. chain s [95040]
    29. 1y1v
      1. chain a [116349]
      2. chain b [116350]
      3. chain c [116351]
      4. chain d [116352]
      5. chain e [116353]
      6. chain f [116354]
      7. chain g [116355]
      8. chain h [116356]
      9. chain i [116357]
      10. chain j [116358]
      11. chain k [116359]
      12. chain l [116360]
      13. chain s [116361]
    30. 2ja6
      automatically matched to 2B63 D:15-75
      complexed with bru, mg, tt, zn
      1. region d:15-75 [138178]
    31. 1nt9
      1. chain a [86151]
      2. chain b [86152]
      3. chain c [86153]
      4. chain d [86154]
      5. chain e [86155]
      6. chain f [86156]
      7. chain g [86157]
      8. chain h [86158]
      9. chain i [86159]
      10. chain j [86160]
      11. chain k [86161]
      12. chain l [86162]
    32. 1nik
      1. chain a [85743]
      2. chain b [85744]
      3. chain c [85745]
      4. chain d [85746]
      5. chain e [85747]
      6. chain f [85748]
      7. chain g [85749]
      8. chain h [85750]
      9. chain i [85751]
      10. chain j [85752]
      11. chain k [85753]
      12. chain l [85754]
    33. 1y1y
      1. chain a [116376]
      2. chain b [116377]
      3. chain c [116378]
      4. chain d [116379]
      5. chain e [116380]
      6. chain f [116381]
      7. chain g [116382]
      8. chain h [116383]
      9. chain i [116384]
      10. chain j [116385]
      11. chain k [116386]
      12. chain l [116387]
      13. chain s [116388]
    34. 1r9s
      1. chain a [111729]
      2. chain b [111730]
      3. chain c [111731]
      4. chain e [111732]
      5. chain f [111733]
      6. chain h [111734]
      7. chain i [111735]
      8. chain j [111736]
      9. chain k [111737]
      10. chain l [111738]
    35. 1y77
      1. chain a [116512]
      2. chain b [116513]
      3. chain c [116514]
      4. chain d [116515]
      5. chain e [116516]
      6. chain f [116517]
      7. chain g [116518]
      8. chain h [116519]
      9. chain i [116520]
      10. chain j [116521]
      11. chain k [116522]
      12. chain l [116523]
    36. 1r5u
      complexed with transcription elongation factor TFIIB
      1. chain a [97105]
      2. chain b [97106]
      3. chain c [97107]
      4. chain e [97108]
      5. chain f [97109]
      6. chain h [97110]
      7. chain i [97111]
      8. chain j [97112]
      9. chain k [97113]
      10. chain l [97114]
      11. chain m [97115]
    37. 1r9t
      1. chain a [111739]
      2. chain b [111740]
      3. chain c [111741]
      4. chain e [111742]
      5. chain f [111743]
      6. chain h [111744]
      7. chain i [111745]
      8. chain j [111746]
      9. chain k [111747]
      10. chain l [111748]
    38. 1sfo
      strand separated elongation complex
      1. chain a [98834]
      2. chain b [98835]
      3. chain c [98836]
      4. chain e [98837]
      5. chain f [98838]
      6. chain h [98839]
      7. chain i [98840]
      8. chain j [98841]
      9. chain k [98842]
      10. chain l [98843]