Structural Classification of Proteins

Family: RNA polymerase

Lineage:

Root: scop
Class: Low resolution protein structures [58117]
Not a true class
Fold: RNA polymerase [58180]
Superfamily: RNA polymerase [58181]
uperfamily
Family: RNA polymerase [58182]

Protein Domains:

DNA-directed RNA polymerase alpha(2), beta, beta-prime and omega subunits [58183]
1. Thermus aquaticus [TaxId: 271] [58184] (3)
  1. 1l9u
    holoenzyme at 4 Angstrom resolution
    1. chain a [73748]
    2. chain b [73749]
    3. chain j [73754]
    4. chain k [73755]
    5. chain c [73750]
    6. chain l [73756]
    7. chain d [73751]
    8. chain m [73757]
    9. chain e [73752]
    10. chain n [73758]
    11. chain h [73753]
    12. chain q [73759]
  2. 1hqm
    1. chain a [45972]
    2. chain b [45973]
    3. chain c [45974]
    4. chain d [45975]
    5. chain e [45976]
  3. 1l9z
    holoenzyme/fork-junction promoter DNA complex at 6.5 Angstrom resolution
    1. chain a [73766]
    2. chain b [73767]
    3. chain c [73768]
    4. chain d [73769]
    5. chain e [73770]
    6. chain h [73771]
2. Thermus thermophilus [TaxId: 274] [161285] (1)
  1. 2o5i
    automatically matched to d1hqme_
    complexed with mg, zn
    1. region e:2-96 [148602]
Complete 12-subunit RNA polymerase II complex [90261]
1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [90262] (38)
  1. 3cqz
    automatically matched to d1wcma_
    complexed with ilx, trx, zn
    1. region a:6-1450 [156929]
  2. 3cqz
    automatically matched to d1wcmk_
    complexed with ilx, trx, zn
    1. region k:2-114 [156934]
  3. 2r7z
    automatically matched to d1wcma_
    complexed with cpt, mg, zn
    1. region a:2-1455 [151658]
  4. 2r7z
    automatically matched to d1y1vd_
    complexed with cpt, mg, zn
    1. region d:4-221 [151660]
  5. 2r7z
    automatically matched to d1wcmg_
    complexed with cpt, mg, zn
    1. region g:1-171 [151662]
  6. 2r7z
    automatically matched to d1wcmk_
    complexed with cpt, mg, zn
    1. region k:1-114 [151665]
  7. 2r92
    automatically matched to d1wcma_
    complexed with mg, zn
    1. region a:2-1455 [151745]
  8. 2r92
    automatically matched to d1y1vd_
    complexed with mg, zn
    1. region d:4-221 [151747]
  9. 2r92
    automatically matched to d1wcmg_
    complexed with mg, zn
    1. region g:1-171 [151749]
  10. 2r92
    automatically matched to d1wcmk_
    complexed with mg, zn
    1. region k:1-112 [151752]
  11. 2r93
    automatically matched to d1wcma_
    complexed with mg, zn
    1. region a:2-1455 [151754]
  12. 2r93
    automatically matched to d1y1vd_
    complexed with mg, zn
    1. region d:4-221 [151756]
  13. 2r93
    automatically matched to d1wcmg_
    complexed with mg, zn
    1. region g:1-171 [151758]
  14. 2r93
    automatically matched to d1wcmk_
    complexed with mg, zn
    1. region k:1-112 [151761]
  15. 2vum
    automatically matched to d1wcma_
    complexed with bru, ilx, mg, trx, zn
    1. region a:2-1455 [153548]
  16. 2vum
    automatically matched to d1y1vd_
    complexed with bru, ilx, mg, trx, zn
    1. region d:4-221 [153550]
  17. 2vum
    automatically matched to d1wcmg_
    complexed with bru, ilx, mg, trx, zn
    1. region g:1-171 [153552]
  18. 2vum
    automatically matched to d1wcmk_
    complexed with bru, ilx, mg, trx, zn
    1. region k:1-114 [153555]
  19. 2b63
    low resulution structure
    complexed with 5bu, mg, zn
    1. region g:1-79 [127925]
  20. 2b63
    low resulution structure
    complexed with 5bu, mg, zn
    1. region d:15-75 [127921]
  21. 2ja7
    automatically matched to 2B63 D:15-75
    complexed with bru, mg, tt, zn
    1. region d:15-75 [138194]
  22. 2ja7
    automatically matched to 2B63 D:15-75
    complexed with bru, mg, tt, zn
    1. region p:15-75 [138210]
  23. 1wcm
    1. chain a [114510]
    2. chain b [114511]
    3. chain c [114512]
    4. chain d [114513]
    5. chain e [114514]
    6. chain f [114515]
    7. chain g [114516]
    8. chain h [114517]
    9. chain i [114518]
    10. chain j [114519]
    11. chain k [114520]
    12. chain l [114521]
  24. 2ja5
    automatically matched to 2B63 D:15-75
    complexed with bru, mg, zn
    1. region d:15-75 [138162]
  25. 2ja8
    automatically matched to 2B63 D:15-75
    complexed with bru, mg, tt, zn
    1. region d:15-75 [138226]
  26. 1y1w
    1. chain a [116362]
    2. chain b [116363]
    3. chain c [116364]
    4. chain d [116365]
    5. chain e [116366]
    6. chain f [116367]
    7. chain g [116368]
    8. chain h [116369]
    9. chain i [116370]
    10. chain j [116371]
    11. chain k [116372]
    12. chain l [116373]
  27. 2b8k
    automatically matched to 2B63 D:15-75
    complexed with zn
    1. region d:15-75 [128080]
  28. 1pqv
    complexed with transcription elongation factor S-II
    1. chain a [95028]
    2. chain b [95029]
    3. chain c [95030]
    4. chain d [95031]
    5. chain e [95032]
    6. chain f [95033]
    7. chain g [95034]
    8. chain h [95035]
    9. chain i [95036]
    10. chain j [95037]
    11. chain k [95038]
    12. chain l [95039]
    13. chain s [95040]
  29. 1y1v
    1. chain a [116349]
    2. chain b [116350]
    3. chain c [116351]
    4. chain d [116352]
    5. chain e [116353]
    6. chain f [116354]
    7. chain g [116355]
    8. chain h [116356]
    9. chain i [116357]
    10. chain j [116358]
    11. chain k [116359]
    12. chain l [116360]
    13. chain s [116361]
  30. 2ja6
    automatically matched to 2B63 D:15-75
    complexed with bru, mg, tt, zn
    1. region d:15-75 [138178]
  31. 1nt9
    1. chain a [86151]
    2. chain b [86152]
    3. chain c [86153]
    4. chain d [86154]
    5. chain e [86155]
    6. chain f [86156]
    7. chain g [86157]
    8. chain h [86158]
    9. chain i [86159]
    10. chain j [86160]
    11. chain k [86161]
    12. chain l [86162]
  32. 1nik
    1. chain a [85743]
    2. chain b [85744]
    3. chain c [85745]
    4. chain d [85746]
    5. chain e [85747]
    6. chain f [85748]
    7. chain g [85749]
    8. chain h [85750]
    9. chain i [85751]
    10. chain j [85752]
    11. chain k [85753]
    12. chain l [85754]
  33. 1y1y
    1. chain a [116376]
    2. chain b [116377]
    3. chain c [116378]
    4. chain d [116379]
    5. chain e [116380]
    6. chain f [116381]
    7. chain g [116382]
    8. chain h [116383]
    9. chain i [116384]
    10. chain j [116385]
    11. chain k [116386]
    12. chain l [116387]
    13. chain s [116388]
  34. 1r9s
    1. chain a [111729]
    2. chain b [111730]
    3. chain c [111731]
    4. chain e [111732]
    5. chain f [111733]
    6. chain h [111734]
    7. chain i [111735]
    8. chain j [111736]
    9. chain k [111737]
    10. chain l [111738]
  35. 1y77
    1. chain a [116512]
    2. chain b [116513]
    3. chain c [116514]
    4. chain d [116515]
    5. chain e [116516]
    6. chain f [116517]
    7. chain g [116518]
    8. chain h [116519]
    9. chain i [116520]
    10. chain j [116521]
    11. chain k [116522]
    12. chain l [116523]
  36. 1r5u
    complexed with transcription elongation factor TFIIB
    1. chain a [97105]
    2. chain b [97106]
    3. chain c [97107]
    4. chain e [97108]
    5. chain f [97109]
    6. chain h [97110]
    7. chain i [97111]
    8. chain j [97112]
    9. chain k [97113]
    10. chain l [97114]
    11. chain m [97115]
  37. 1r9t
    1. chain a [111739]
    2. chain b [111740]
    3. chain c [111741]
    4. chain e [111742]
    5. chain f [111743]
    6. chain h [111744]
    7. chain i [111745]
    8. chain j [111746]
    9. chain k [111747]
    10. chain l [111748]
  38. 1sfo
    strand separated elongation complex
    1. chain a [98834]
    2. chain b [98835]
    3. chain c [98836]
    4. chain e [98837]
    5. chain f [98838]
    6. chain h [98839]
    7. chain i [98840]
    8. chain j [98841]
    9. chain k [98842]
    10. chain l [98843]