NIMS: Nucleobase Interactions in Macromolecular Structures
Home
Search
Explore
About
Contact Us
Loading
Enter PDB ID
:
(or)
Upload PDB file
:
Input Parameters
Residue specificity
:
Donor
Donor (D)
An electronegative atom to which a hydrogen atom is covalantly bonded.
=>
ALA
ARG
ASN
ASP
CYS
GLU
GLN
GLY
HIS
ILE
LEU
LYS
MET
PHE
PRO
SER
THR
TRP
TYR
VAL
OTHER
Acceptor
Acceptor (A)
An electronegative atom to which a hydrogen atom is attracted.
=>
ALA
ARG
ASN
ASP
CYS
GLU
GLN
GLY
HIS
ILE
LEU
LYS
MET
PHE
PRO
SER
THR
TRP
TYR
VAL
OTHER
Select the bond type
:
Donor
Donor (D)
An electronegative atom to which a hydrogen atom is covalantly bonded.
=>
N-H
O-H
S-H
C-H
Acceptor
Acceptor (A)
An electronegative atom to which a hydrogen atom is attracted.
=>
O
S
N
P
F
Select the interaction type
:
All type
Main Chain - Hetatm
Hetatm - Main Chain
Side Chain - Hetatm
Hetatm - Side Chain
Hetatm - Hetatm
Distance
DA Distance
Distance between the CA atoms of the donor and the acceptor residue.
range (in Å)
:
to
min: 2.4 and max: 3.8
Angle
DHA Angle
Angle formed by the Donor and the acceptor at the hydrogen.
range (in °)
:
to
min: 90 and max: 180