Structural Classification of Proteins
home mail help root up expand collapse

Fold: RuvA C-terminal domain-like

3 helices; bundle, right-handed twist

Lineage:

  1. Root: scop
  2. Class: All alpha proteins [46456]
  3. Fold: RuvA C-terminal domain-like [46928]
    3 helices; bundle, right-handed twist

Superfamilies:

  1. DNA helicase RuvA subunit, C-terminal domain [46929] (1)
    possibly related to UBA-like domains
    link to SUPERFAMILY database - Superfamily
    1. DNA helicase RuvA subunit, C-terminal domain [46930] (3)
      1. DNA helicase RuvA subunit, C-terminal domain [46931]
        tetramer; binds Holliday junction
        1. Escherichia coli [TaxId: 562] [46932] (4)
          1. 1cuk picpicxrefxref
            1. region a:156-203 [16273] picpiclink
          2. 1hjp picpicxrefxref
            1. region a:158-203 [16274] picpiclink
          3. 1c7y picpicxrefxref
            protein/DNA complex
            1. region a:155-203 [16275] picpiclink
          4. 1bdx picpicxrefxref
            protein/DNA complex
            1. region a:156-203 [16276] picpiclink
            2. region b:156-203 [16277] picpiclink
            3. region c:156-203 [16278] picpiclink
            4. region d:156-203 [16279] picpiclink
        2. Mycobacterium leprae [TaxId: 1769] [46933] (1)
          1. 1bvs picpicxrefxref
            1. region a:148-203 [16280] picpiclink
            2. region b:147-203 [16281] picpiclink
            3. region c:148-203 [16282] picpiclink
            4. region d:147-203 [16283] picpiclink
            5. region e:148-203 [16284] picpiclink
            6. region f:147-203 [16285] picpiclink
            7. region g:148-203 [16286] picpiclink
            8. region h:147-203 [16287] picpiclink
        3. Thermus thermophilus [TaxId: 274] [81702] (2)
          1. 1ixs picpicxrefxref
            complexed with anp
            1. chain a [76932] picpiclink
          2. 1ixr picpicxrefxrefxrefxref
            complexed with anp; mutant
            1. region b:139-191 [76927] picpiclink
  2. UBA-like [46934] (4)
    link to SUPERFAMILY database - Superfamily
    1. UBA domain [46935] (24)
      1. DNA repair protein Hhr23a [46936]
        1. Human (Homo sapiens) [TaxId: 9606] [46937] (5)
          1. 1oqy picpicxrefxref
            flexible linkers excluded
            1. region a:160-200 [93439] picpiclink
            2. region a:317-360 [93440] picpiclink
          2. 1qze picpicxrefxref
            1. region a:160-200 [96629] picpiclink
            2. region a:317-360 [96630] picpiclink
          3. 1ify picpic
            internal UBA domain
            1. chain a [71207] picpiclink
          4. 1f4i picpic
            C-terminal UBA domain
            mutant
            1. chain a [16288] picpiclink
          5. 1dv0 picpic
            C-terminal UBA domain
            1. chain a [16289] picpiclink
      2. Sequestosome 1 (Sqstm1) [101063]
        ubiquitin-binding protein p62
        1. Human (Homo sapiens) [TaxId: 9606] [101064] (4)
          1. 2k0b picpic
            automatically matched to d1q02a_
            1. region x:1-52 [148253] picpiclink
          2. 2jy7 picpic
            automatically matched to d1q02a_
            1. region a:1-52 [148239] picpiclink
          3. 1q02 picpic
            1. chain a [95490] picpiclink
          4. 2jy8 picpic
            automatically matched to d1q02a_
            1. region a:1-52 [148240] picpiclink
      3. Auxilin-like protein Swa2p [101065]
        1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [101066] (1)
          1. 1pgy picpic
            1. chain a [94696] picpiclink
      4. Ubiquitin-protein ligase ubc1 [109719]
        1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [109720] (1)
          SQ P21734
          1. 1tte picpicxref
            mutant
            1. region a:161-215 [107295] picpiclink
      5. Ubiquitin carboxyl-terminal hydrolase 25 [109721]
        1. Mouse (Mus musculus) [TaxId: 10090] [109722] (1)
          SQ P57080 1-67
          1. 1vdl picpic
            Structural genomics target
            1. chain a [108528] picpiclink
      6. NEDD8 ultimate buster-1 (Nub1) [116824]
        1. Mouse (Mus musculus) [TaxId: 10090] [116825] (1)
          SQ P54729 469-540
          1. 1veg picpic
            Structural genomics target
            1. chain a [113634] picpiclink
      7. Ubiquitin isopeptidase T [116826]
        1. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [116827] (2)
          SQ Q9LJT6 594-665; Q8L6Y1 651-710
          1. 1vek picpic
            Structural genomics target
            1. chain a [113636] picpiclink
          2. 1wiv picpic
            Structural genomics target
            1. chain a [114680] picpiclink
      8. Rhomboid family protein At3g58460 [116828]
        1. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [116829] (1)
          SQ Q8LB17 342-401
          1. 1vg5 picpic
            1. chain a [113640] picpiclink
      9. Ubiquitin-associated protein 1, UBAP1 [116830]
        1. Human (Homo sapiens) [TaxId: 9606] [116831] (1)
          SQ Q9NZ09 381-430
          1. 1wgn picpic
            Structural genomics target
            1. chain a [114617] picpiclink
      10. UBA/UBX 33.3 kDa protein [116832]
        1. Mouse (Mus musculus) [TaxId: 10090] [116833] (1)
          SQ Q922Y1 2-52
          1. 1whc picpic
            Structural genomics target
            1. chain a [114640] picpiclink
      11. Tudor domain containing protein 3, TDRD3 [116834]
        1. Human (Homo sapiens) [TaxId: 9606] [116835] (1)
          SQ Q9H7E2 194-243
          1. 1wji picpic
            Structural genomics target
            1. chain a [114698] picpiclink
      12. DSK2 [140323]
        1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [140324] (28)
          SQ P48510 328-371! SQ P48510 328-373
          1. 2bwb picpic
            automatically matched to 2BWE A:328-371
            1. region a:328-371 [129329] picpiclink
          2. 2bwb picpic
            automatically matched to 2BWE A:328-371
            1. region b:328-370 [129330] picpiclink
          3. 2bwb picpic
            automatically matched to 2BWE A:328-371
            1. region c:328-371 [129331] picpiclink
          4. 2bwb picpic
            automatically matched to 2BWE A:328-371
            1. region d:328-371 [129332] picpiclink
          5. 2bwb picpic
            automatically matched to 2BWE A:328-371
            1. region e:328-370 [129333] picpiclink
          6. 2bwb picpic
            automatically matched to 2BWE A:328-371
            1. region f:328-370 [129334] picpiclink
          7. 2bwb picpic
            automatically matched to 2BWE A:328-371
            1. region g:328-371 [129335] picpiclink
          8. 2bwb picpic
            automatically matched to 2BWE A:328-371
            1. region h:328-370 [129336] picpiclink
          9. 2bwb picpic
            automatically matched to 2BWE A:328-371
            1. region i:328-370 [129337] picpiclink
          10. 2bwe picpicxrefxrefxref
            1. region a:328-371 [129342] picpiclink
          11. 2bwe picpicxrefxrefxref
            automatically matched to 2BWE A:328-371
            1. region b:328-371 [129343] picpiclink
          12. 2bwe picpicxrefxrefxref
            automatically matched to 2BWE A:328-371
            1. region c:328-371 [129344] picpiclink
          13. 2bwe picpicxrefxrefxref
            automatically matched to 2BWE A:328-371
            1. region d:328-371 [129345] picpiclink
          14. 2bwe picpicxrefxrefxref
            automatically matched to 2BWE A:328-371
            1. region e:328-371 [129346] picpiclink
          15. 2bwe picpicxrefxrefxref
            automatically matched to 2BWE A:328-371
            1. region f:328-371 [129347] picpiclink
          16. 2bwe picpicxrefxrefxref
            automatically matched to 2BWE A:328-371
            1. region g:328-371 [129348] picpiclink
          17. 2bwe picpicxrefxrefxref
            automatically matched to 2BWE A:328-371
            1. region h:328-371 [129349] picpiclink
          18. 2bwe picpicxrefxrefxref
            automatically matched to 2BWE A:328-371
            1. region i:328-371 [129350] picpiclink
          19. 2bwe picpicxrefxrefxref
            automatically matched to 2BWE A:328-371
            1. region j:328-371 [129351] picpiclink
          20. 2bwe picpicxrefxrefxref
            automatically matched to 2BWE A:328-371
            1. region k:328-371 [129352] picpiclink
          21. 2bwe picpicxrefxrefxref
            automatically matched to 2BWE A:328-371
            1. region l:328-371 [129353] picpiclink
          22. 2bwe picpicxrefxrefxref
            automatically matched to 2BWE A:328-371
            1. region m:328-371 [129354] picpiclink
          23. 2bwe picpicxrefxrefxref
            automatically matched to 2BWE A:328-371
            1. region n:328-371 [129355] picpiclink
          24. 2bwe picpicxrefxrefxref
            automatically matched to 2BWE A:328-371
            1. region o:328-371 [129356] picpiclink
          25. 2bwe picpicxrefxrefxref
            automatically matched to 2BWE A:328-371
            1. region p:328-370 [129357] picpiclink
          26. 2bwe picpicxrefxrefxref
            automatically matched to 2BWE A:328-371
            1. region q:328-371 [129358] picpiclink
          27. 2bwe picpicxrefxrefxref
            automatically matched to 2BWE A:328-371
            1. region r:328-371 [129359] picpiclink
          28. 1wr1 picpicxref
            1. region b:328-373 [121185] picpiclink
      13. Ubiquilin-3 [140325]
        1. Human (Homo sapiens) [TaxId: 9606] [140326] (1)
          SQ Q9H347 615-655
          1. 2dah picpic
            1. region a:8-48 [131352] picpiclink
      14. Ubiquitin-conjugating enzyme E2-25 kDa, C-terminal domain [140327]
        1. Human (Homo sapiens) [TaxId: 9606] [140328] (5)
          SQ P61086 157-198
          1. 3e46 picpicxref
            automatically matched to d1ylaa1
            complexed with ca; mutant
            1. region a:157-198 [157994] picpiclink
          2. 1yla picpicxrefxref
            1. region a:157-198 [123641] picpiclink
          3. 1yla picpicxrefxref
            automatically matched to 1YLA A:157-198
            1. region b:157-198 [123643] picpiclink
          4. 2o25 picpicxrefxrefxrefxref
            automatically matched to 1YLA A:157-198
            1. region a:157-198 [138886] picpiclink
          5. 2o25 picpicxrefxrefxrefxref
            automatically matched to 1YLA A:157-198
            1. region b:157-198 [138888] picpiclink
      15. Cbl-interacting protein p70, STS1 [140329]
        1. Human (Homo sapiens) [TaxId: 9606] [140330] (1)
          SQ Q8TF42 26-76
          1. 2cpw picpic
            1. region a:8-58 [130707] picpiclink
      16. Ubiquitin-associated protein 2-like Ubap2l [140331]
        RSGI ruh-015
        1. Mouse (Mus musculus) [TaxId: 10090] [140332] (1)
          SQ Q80X50 19-109
          1. 1wj7 picpic
            1. region a:8-98 [120976] picpiclink
      17. Trinucleotide repeat containing 6c protein, TNRC6C [140333]
        1. Human (Homo sapiens) [TaxId: 9606] [140334] (1)
          SQ Q86UE5 197-268
          1. 2dkl picpic
            1. region a:8-79 [131555] picpiclink
      18. Suppressor of T-cell receptor signaling 2 (STS-2) [140335]
        1. Human (Homo sapiens) [TaxId: 9606] [140336] (1)
          SQ P57075 20-70
          1. 2crn picpic
            1. region a:8-58 [130741] picpiclink
      19. Migration-inducing protein 19 NBR1 [140337]
        Next to Brca1 gene 1
        1. Human (Homo sapiens) [TaxId: 9606] [140338] (1)
          SQ Q14596 916-956
          1. 2cp8 picpic
            1. region a:8-48 [130695] picpiclink
      20. Ubiquilin-like protein Ubqlnl [140339]
        1. Mouse (Mus musculus) [TaxId: 10090] [140340] (1)
          SQ Q14DL0 561-610
          1. 2dna picpic
            1. region a:12-61 [131586] picpiclink
      21. Serine/threonine protein kinase LATS2 [140341]
        1. Mouse (Mus musculus) [TaxId: 10090] [140342] (1)
          SQ Q7TSJ6 98-138
          1. 2cos picpic
            1. region a:8-48 [130683] picpiclink
      22. 4931431F19Rik [140343]
        Riken cDNA clone 4931431f19
        1. Mouse (Mus musculus) [TaxId: 10090] [140344] (1)
          SQ Q9D4I8 447-507
          1. 1vej picpic
            1. region a:8-68 [120020] picpiclink
      23. UBA-domain protein mud1 [158356]
        1. Schizosaccharomyces pombe [TaxId: 4896] [158357] (2)
          SQ Q10256 295-332
          1. 1z96 picpic
            1. region a:295-332 [145960] picpiclink
          2. 1z96 picpic
            automatically matched to 1Z96 A:295-332
            1. region b:298-332 [145961] picpiclink
      24. Endocytic protein Ede1, YBL047C [158358]
        1. Saccharomyces cerevisiae [TaxId: 4932] [158359] (1)
          SQ P34216 1339-1381
          1. 2g3q picpicxref
            1. region a:1339-1381 [145181] picpiclink
    2. TS-N domain [63423] (4)
      1. Elongation factor Ts (EF-Ts), N-terminal domain [63424]
        1. Escherichia coli [TaxId: 562] [63425] (1)
          1. 1efu picpicxrefxrefxrefxref
            1. region b:1-54 [58975] picpiclink
            2. region d:1-54 [58977] picpiclink
        2. Thermus thermophilus [TaxId: 274] [63426] (1)
          1. 1aip picpicxrefxrefxrefxref
            1. region c:2-53 [58930] picpiclink
            2. region d:2-53 [58932] picpiclink
            3. region g:2-53 [58934] picpiclink
            4. region h:3-53 [58936] picpiclink
        3. Cow (Bos taurus), mitochondrial [TaxId: 9913] [116836] (1)
          SQ P43896 56-331
          1. 1xb2 picpicxrefxrefxrefxref
            1. region b:56-111 [115057] picpiclink
        4. Human (Homo sapiens), mitochondrial [TaxId: 9606] [140345] (1)
          SQ P43897 45-95
          1. 2cp9 picpic
            1. region a:8-58 [130696] picpiclink
    3. TAP-C domain-like [68973] (2)
      1. FG-binding, C-terminal domain of TAP [68974]
        1. Human (Homo sapiens) [TaxId: 9606] [68975] (2)
          1. 1oai picpic
            complexed with FxFG nucleoporin peptide
            1. chain a [81255] picpiclink
          2. 1go5 picpic
            1. chain a [65410] picpiclink
      2. NSFL1 (p97 ATPase) cofactor p47, UBA-like domain [101067]
        1. Rat (Rattus norvegicus) [TaxId: 10116] [101068] (1)
          1. 1v92 picpic
            1. chain a [100531] picpiclink
    4. CUE domain [88995] (4)
      Pfam 02845
      1. Vacuolar protein sorting-associated protein vps9 [88996]
        1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [88997] (2)
          1. 1mn3 picpic
            part of the C-terminal helix-swapped homodimer
            complexed with mse; mutant
            1. chain a [85024] picpiclink
          2. 1p3q picpicxref
            partly disordered, helix-swapped homodimer
            complexed with mse; mutant
            1. chain q [87748] picpiclink
            2. chain r [87749] picpiclink
      2. Protein Cue2 (hypothetical protein YKL090W) [88998]
        1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [88999] (1)
          1. 1otr picpicxref
            1. chain a [87413] picpiclink
      3. Toll-interacting protein [116837]
        1. Human (Homo sapiens) [TaxId: 9606] [116838] (1)
          SQ Q9H0E2 229-274
          1. 1wgl picpic
            Structural genomics target
            1. chain a [114615] picpiclink
      4. Activating signal cointegrator 1 complex subunit 2 [140346]
        1. Human (Homo sapiens) [TaxId: 9606] [140347] (1)
          SQ Q9H1I8 463-525
          1. 2di0 picpic
            1. region a:8-70 [131521] picpiclink
  3. post-HMGL domain-like [89000] (2)
    link to SUPERFAMILY database - Superfamily
    1. DmpG/LeuA communication domain-like [89001] (2)
      1. 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain [89002]
        1. Pseudomonas sp. [TaxId: 306] [89003] (1)
          gene product DmpG
          1. 1nvm picpicxrefxrefxref
            complexed with mn, mpd, nad, oxl, sul
            1. region a:291-341 [86249] picpiclink
            2. region c:291-339 [86253] picpiclink
            3. region e:291-339 [86257] picpiclink
            4. region g:291-341 [86261] picpiclink
      2. 2-isopropylmalate synthase LeuA, communication domain [109723]
        1. Mycobacterium tuberculosis [TaxId: 1773] [109724] (1)
          SQ P96420
          1. 1sr9 picpicxrefxref
            complexed with cl, kiv, zn
            1. region a:437-491 [105960] picpiclink
            2. region b:437-491 [105963] picpiclink
    2. Conserved carboxylase domain [109725] (1)
      Pfam 02436
      duplication: contains two domains of this fold, connected with a helical linker
      1. Transcarboxylase 5S subunit, C-terminal domain [109726]
        1. Propionibacterium freudenreichii shermanii [TaxId: 1752] [109727] (6)
          SQ Q70AC7 3-474; d1: 307-367; d2: 416-459
          1. 1rqb picpicxref
            complexed with co
            1. region a:307-474 [105057] picpiclink
          2. 1rqh picpicxref
            complexed with co, pyr
            1. region a:307-474 [105066] picpiclink
          3. 1rr2 picpicxref
            complexed with 2kt, co
            1. region a:307-474 [105073] picpiclink
          4. 1rqe picpicxref
            complexed with co, oaa
            1. region a:307-474 [105061] picpiclink
          5. 1s3h picpicxref
            complexed with co; mutant
            1. region a:307-474 [105235] picpiclink
          6. 1u5j picpicxref
            complexed with co; mutant
            1. region a:307-474 [107682] picpiclink
  4. CRAL/TRIO N-terminal domain [46938] (1)
    link to SUPERFAMILY database - Superfamily
    1. CRAL/TRIO N-terminal domain [46939] (3)
      1. N-terminal domain of phosphatidylinositol transfer protein sec14p [46940]
        1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [46941] (1)
          1. 1aua picpicxref
            complexed with bog
            1. region a:4-96 [16290] picpiclink
      2. Alpha-tocopherol transfer protein [101069]
        1. Human (Homo sapiens) [TaxId: 9606] [101070] (3)
          1. 1r5l picpicxref
            complexed with viv
            1. region a:25-90 [97099] picpiclink
          2. 1oiz picpicxref
            complexed with trt
            1. region a:9-90 [93079] picpiclink
            2. region b:11-90 [93081] picpiclink
          3. 1oip picpicxref
            complexed with so4, vit
            1. region a:25-90 [93071] picpiclink
      3. Supernatant protein factor (SPF), N-terminal domain [101071]
        Sec14-like protein 2; contains extra C-terminal beta-sandwich domain
        1. Human (Homo sapiens) [TaxId: 9606] [101072] (2)
          SQ O76054
          1. 1olm picpicxrefxref
            complexed with vtq
            1. region a:1-75 [104008] picpiclink
            2. region c:1-75 [104011] picpiclink
            3. region e:1-75 [104014] picpiclink
          2. 1o6u picpicxrefxref
            complexed with plm
            1. region a:1-75 [92589] picpiclink
            2. region c:1-75 [92592] picpiclink
            3. region e:1-75 [92595] picpiclink
  5. Elongation factor TFIIS domain 2 [46942] (1)
    link to SUPERFAMILY database - Superfamily
    1. Elongation factor TFIIS domain 2 [46943] (1)
      1. Elongation factor TFIIS domain 2 [46944]
        1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [46945] (1)
          1. 1enw picpic
            1. chain a [16291] picpiclink
  6. Double-stranded DNA-binding domain [46950] (1)
    link to SUPERFAMILY database - Superfamily
    1. Double-stranded DNA-binding domain [46951] (2)
      1. Hypothetical protein MTH1615 [46952]
        1. Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262] [46953] (1)
          1. 1eij picpic
            structural genomics
            1. chain a [16298] picpiclink
      2. Programmed cell death protein 5 [140348]
        1. Human (Homo sapiens) [TaxId: 9606] [140349] (1)
          SQ O14737 8-112
          1. 2cru picpic
            1. region a:8-112 [130742] picpiclink
  7. Hypothetical protein AF0491, middle domain [109728] (1)
    link to SUPERFAMILY database - Superfamily
    1. Hypothetical protein AF0491, middle domain [109729] (1)
      1. Hypothetical protein AF0491, middle domain [109730]
        1. Archaeon Archaeoglobus fulgidus [TaxId: 2234] [109731] (2)
          SQ O29759
          1. 1t95 picpicxrefxref
            1. region a:87-161 [106705] picpiclink
          2. 1p9q picpicxrefxref
            Structural genomics target
            1. region c:87-161 [104093] picpiclink
  8. HBS1-like domain [109732] (1)
    possibly related to UBA-like domains
    link to SUPERFAMILY database - Superfamily
    1. HBS1-like domain [109733] (1)
      1. HBS1-like protein [109734]
        1. Mouse (Mus musculus) [TaxId: 10090] [109735] (1)
          SQ Q69ZS7 51-120
          1. 1ufz picpic
            Structural genomics target
            1. chain a [107821] picpiclink
  9. FGAM synthase PurL, linker domain [109736] (1)
    link to SUPERFAMILY database - Superfamily
    1. FGAM synthase PurL, linker domain [109737] (1)
      1. FGAM synthase PurL, linker domain [109738]
        1. Salmonella typhimurium [TaxId: 90371] [109739] (1)
          SQ P74881
          1. 1t3t picpicxrefxrefxrefxref
            complexed with adp, mg, so4
            1. region a:153-220 [106381] picpiclink
Enter search key:
MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk