Structural Classification of Proteins
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Protein: Ubiquitin from Human (Homo sapiens) [TaxId: 9606]

SQ P62988
identical sequence in many other species

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: beta-Grasp (ubiquitin-like) [54235]
    core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
  4. Superfamily: Ubiquitin-like [54236]
    link to SUPERFAMILY database - Superfamily
  5. Family: Ubiquitin-related [54237]
    Pfam 00240
  6. Protein: Ubiquitin [54238]
  7. Species: Human (Homo sapiens) [TaxId: 9606] [54239]
    SQ P62988
    identical sequence in many other species

PDB Entry Domains:

  1. 1xd3 picpicxref
    complexed with gve, mg
    1. chain b [115146] picpiclink
    2. chain d [115148] picpiclink
  2. 1ogw picpic
    synthetic protein with fluoro-Leu at 50 and 67
    complexed with lef
    1. chain a [87001] picpiclink
  3. 2zcc picpic
    automatically matched to d1aara_
    complexed with zn
    1. region a:1-70 [154337] picpiclink
  4. 2zcc picpic
    automatically matched to d1aara_
    complexed with zn
    1. region b:1-70 [154338] picpiclink
  5. 2zcc picpic
    automatically matched to d1aara_
    complexed with zn
    1. region c:1-71 [154339] picpiclink
  6. 3by4 picpic
    automatically matched to d1aara_
    complexed with 3cn
    1. region b:1-73 [155720] picpiclink
  7. 2znv picpic
    automatically matched to d1aara_
    complexed with edo, zn; mutant
    1. region c:1-73 [154708] picpiclink
  8. 2znv picpic
    automatically matched to d1aara_
    complexed with edo, zn; mutant
    1. region f:1-70 [154710] picpiclink
  9. 2znv picpic
    automatically matched to d1gjza_
    complexed with edo, zn; mutant
    1. region b:1-51 [154707] picpiclink
  10. 2znv picpic
    automatically matched to d1gjza_
    complexed with edo, zn; mutant
    1. region e:1-51 [154709] picpiclink
  11. 2d3g picpic
    automatically matched to d1aara_
    1. region a:1-72 [131206] picpiclink
  12. 2d3g picpic
    automatically matched to d1aara_
    1. region b:1-72 [131207] picpiclink
  13. 2j7q picpicxrefxref
    automatically matched to d1aara_
    complexed with gol, gve, mg, pg4
    1. region b:1-75 [138127] picpiclink
  14. 2j7q picpicxrefxref
    automatically matched to d1aara_
    complexed with gol, gve, mg, pg4
    1. region d:1-75 [138128] picpiclink
  15. 1wrd picpicxref
    automatically matched to d1aara_
    1. region b:1-76 [121194] picpiclink
  16. 2oob picpic
    automatically matched to d1aara_
    1. region b:1-72 [139167] picpiclink
  17. 1ubi picpic
    1. chain a [37584] picpiclink
  18. 1ubq picpic
    1. chain a [37585] picpiclink
  19. 2hd5 picpicxref
    automatically matched to d1aara_
    complexed with zn
    1. region b:1-76 [136341] picpiclink
  20. 1uzx picpicxref
    annotated as bovine in PDB, identical to human sequence
    complexed with mes, mso, so4
    1. chain b [100239] picpiclink
  21. 2qho picpic
    automatically matched to d1aara_
    1. region a:1-72 [150790] picpiclink
  22. 2qho picpic
    automatically matched to d1aara_
    1. region c:1-73 [150791] picpiclink
  23. 2qho picpic
    automatically matched to d1aara_
    1. region e:1-73 [150792] picpiclink
  24. 2qho picpic
    automatically matched to d1aara_
    1. region g:1-72 [150793] picpiclink
  25. 2g45 picpicxrefxref
    automatically matched to d1aara_
    complexed with cl, zn
    1. region b:1-76 [134578] picpiclink
  26. 2g45 picpicxrefxref
    automatically matched to d1aara_
    complexed with cl, zn
    1. region e:1-76 [134579] picpiclink
  27. 1s1q picpicxref
    complexed with acy, cu, so4
    1. chain b [98352] picpiclink
    2. chain d [98354] picpiclink
  28. 2jf5 picpic
    automatically matched to d1aara_
    complexed with cd, cl, co, mg
    1. region a:1-73 [148030] picpiclink
  29. 2jf5 picpic
    automatically matched to d1aara_
    complexed with cd, cl, co, mg
    1. region b:1-73 [148031] picpiclink
  30. 2c7n picpicxrefxrefxrefxref
    automatically matched to d1aara_
    complexed with zn
    1. region b:1-74 [130070] picpiclink
  31. 2c7n picpicxrefxrefxrefxref
    automatically matched to d1aara_
    complexed with zn
    1. region d:1-74 [130072] picpiclink
  32. 2c7n picpicxrefxrefxrefxref
    automatically matched to d1aara_
    complexed with zn
    1. region f:1-74 [130073] picpiclink
  33. 2c7n picpicxrefxrefxrefxref
    automatically matched to d1aara_
    complexed with zn
    1. region h:1-73 [130075] picpiclink
  34. 2c7n picpicxrefxrefxrefxref
    automatically matched to d1aara_
    complexed with zn
    1. region j:1-72 [130077] picpiclink
  35. 2c7n picpicxrefxrefxrefxref
    automatically matched to d1aara_
    complexed with zn
    1. region l:1-74 [130078] picpiclink
  36. 2c7m picpicxref
    automatically matched to d1aara_
    complexed with zn
    1. region b:1-74 [130068] picpiclink
  37. 2ibi picpicxref
    automatically matched to d1aara_
    complexed with neh, zn; mutant
    1. region b:1-75 [137194] picpiclink
  38. 3c0r picpic
    automatically matched to d1aara_
    complexed with 3cn
    1. region b:1-73 [155839] picpiclink
  39. 3c0r picpic
    automatically matched to d1aara_
    complexed with 3cn
    1. region d:1-73 [155840] picpiclink
  40. 2o6v picpic
    automatically matched to d1gjza_
    complexed with mes, slz, so4; mutant
    1. region b:101-151 [138923] picpiclink
  41. 2o6v picpic
    automatically matched to d1aara_
    complexed with mes, slz, so4; mutant
    1. region a:1-75 [138922] picpiclink
  42. 2o6v picpic
    automatically matched to d1aara_
    complexed with mes, slz, so4; mutant
    1. region c:201-276 [138924] picpiclink
  43. 2o6v picpic
    automatically matched to d1aara_
    complexed with mes, slz, so4; mutant
    1. region e:401-475 [138925] picpiclink
  44. 2o6v picpic
    automatically matched to d1aara_
    complexed with mes, slz, so4; mutant
    1. region g:601-676 [138927] picpiclink
  45. 2o6v picpic
    automatically matched to d1gjza_
    complexed with mes, slz, so4; mutant
    1. region f:501-551 [138926] picpiclink
  46. 2o6v picpic
    complexed with mes, slz, so4; mutant
    1. region d:301-376 [145715] picpiclink
  47. 2o6v picpic
    automatically matched to 2O6V D:301-376
    complexed with mes, slz, so4; mutant
    1. region h:702-776 [145716] picpiclink
  48. 1aar picpic
    di-ubiquitin
    1. chain a [37586] picpiclink
    2. chain b [37587] picpiclink
  49. 1nbf picpicxref
    complex with USP7
    complexed with glz
    1. chain c [80389] picpiclink
    2. chain d [80390] picpiclink
  50. 2fif picpicxrefxrefxref
    automatically matched to d1aara_
    complexed with so4, zn
    1. region a:1-73 [133518] picpiclink
  51. 2fif picpicxrefxrefxref
    automatically matched to d1aara_
    complexed with so4, zn
    1. region c:1-73 [133520] picpiclink
  52. 2fif picpicxrefxrefxref
    automatically matched to d1aara_
    complexed with so4, zn
    1. region e:1-73 [133522] picpiclink
  53. 1wr6 picpicxrefxrefxrefxref
    automatically matched to d1aara_
    1. region e:1-72 [121186] picpiclink
  54. 1wr6 picpicxrefxrefxrefxref
    automatically matched to d1aara_
    1. region f:1-73 [121187] picpiclink
  55. 1wr6 picpicxrefxrefxrefxref
    automatically matched to d1aara_
    1. region g:1-72 [121188] picpiclink
  56. 1wr6 picpicxrefxrefxrefxref
    automatically matched to d1aara_
    1. region h:1-74 [121189] picpiclink
  57. 3dvg picpicxrefxrefxrefxref
    automatically matched to d1aara_
    mutant
    1. region x:1-73 [157892] picpiclink
  58. 3dvg picpicxrefxrefxrefxref
    automatically matched to d1gjza_
    mutant
    1. region y:1-51 [157893] picpiclink
  59. 3dvn picpicxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to d1aara_
    mutant
    1. region u:1-73 [157902] picpiclink
  60. 3dvn picpicxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to d1aara_
    mutant
    1. region x:1-73 [157904] picpiclink
  61. 3dvn picpicxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to d1gjza_
    mutant
    1. region v:1-51 [157903] picpiclink
  62. 3dvn picpicxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to d1gjza_
    mutant
    1. region y:1-51 [157905] picpiclink
  63. 1tbe picpic
    tetra-ubiquitin
    1. chain a [37588] picpiclink
    2. chain b [37589] picpiclink
  64. 1f9j picpic
    a new crystal form of tetraubiquitin
    1. chain a [37590] picpiclink
    2. chain b [37591] picpiclink
  65. 2gmi picpicxrefxref
    automatically matched to d1aara_
    mutant
    1. region c:501-576 [135382] picpiclink
  66. 2fid picpicxref
    automatically matched to d1aara_
    complexed with zn
    1. region a:1-73 [133516] picpiclink
  67. 2hth picpicxref
    automatically matched to d1aara_
    1. region a:1-73 [136742] picpiclink
  68. 1yd8 picpicxrefxref
    automatically matched to d1aara_
    1. region u:1-73 [122974] picpiclink
  69. 1yd8 picpicxrefxref
    automatically matched to d1aara_
    1. region v:1-73 [122975] picpiclink
  70. 2pe9 picpic
    automatically matched to d1aara_
    1. region a:1-72 [149399] picpiclink
  71. 2pe9 picpic
    automatically matched to d1aara_
    1. region b:1-72 [149400] picpiclink
  72. 2pea picpic
    automatically matched to d1aara_
    1. region a:1-72 [149401] picpiclink
  73. 2pea picpic
    automatically matched to d1aara_
    1. region b:1-72 [149402] picpiclink
  74. 1d3z picpic
    1. chain a [37592] picpiclink
  75. 2k6d picpic
    automatically matched to d1aara_
    1. region b:1-73 [148276] picpiclink
  76. 2z59 picpic
    automatically matched to d1aara_
    1. region b:1-73 [154162] picpiclink
  77. 2nr2 picpic
    automatically matched to d1aara_
    1. region a:1-76 [138518] picpiclink
  78. 1gjz picpic
    1. chain a [65223] picpiclink
    2. chain b [65224] picpiclink
  79. 1zgu picpicxref
    mutant
    1. region b:1-76 [125062] picpiclink
  80. 2bgf picpic
    automatically matched to d1aara_
    1. region a:1-76 [128476] picpiclink
  81. 2bgf picpic
    automatically matched to d1aara_
    1. region b:1-76 [128477] picpiclink
  82. 1xqq picpic
    automatically matched to d1aara_
    1. region a:1-76 [122240] picpiclink
  83. 2dx5 picpicxref
    automatically matched to d1aara_
    1. region b:1-73 [131867] picpiclink
  84. 2den picpic
    automatically matched to d1aara_
    mutant
    1. region b:1-76 [131432] picpiclink
  85. 1fxt picpicxref
    1. chain b [65056] picpiclink
  86. 2jy6 picpic
    automatically matched to d1aara_
    1. region a:1-73 [148238] picpiclink
  87. 2k39 picpic
    automatically matched to d1aara_
    1. region a:1-73 [148263] picpiclink
  88. 2jri picpic
    automatically matched to d1aara_
    1. region b:183-255 [148185] picpiclink
  89. 2jri picpic
    automatically matched to d1aara_
    1. region c:259-331 [148186] picpiclink
  90. 2ayo picpicxref
    automatically matched to d1aara_
    1. region b:1-76 [127567] picpiclink
  91. 2fuh picpicxref
    automatically matched to d1aara_
    1. region b:1-76 [134174] picpiclink
  92. 1yx6 picpic
    automatically matched to d1aara_
    1. region b:1-76 [124173] picpiclink
  93. 1yx5 picpic
    automatically matched to d1aara_
    1. region b:1-76 [124172] picpiclink
  94. 1g6j picpic
    Structure in aot reverse micelles
    1. chain a [60319] picpiclink
  95. 1q5w picpicxref
    complexed with zn
    1. chain b [95946] picpiclink
  96. 1v80 picpic
    automatically matched to d1aara_
    1. region a:1-76 [119867] picpiclink
  97. 1v81 picpic
    automatically matched to d1aara_
    1. region a:1-76 [119868] picpiclink
  98. 2jzz picpic
    automatically matched to d1aara_
    1. region a:1-73 [148251] picpiclink
  99. 1p3q picpicxref
    annotated as bovine in PDB, identical to human sequence
    complexed with mse; mutant
    1. chain u [87750] picpiclink
    2. chain v [87751] picpiclink
  100. 1sif picpic
    a multiple hydrophobic core mutant
    1. chain a [105574] picpiclink
  101. 1ud7 picpic
    designed hydrophobic core mutant
    1. chain a [37593] picpiclink
  102. 1c3t picpic
    designed hydrophobic core mutant
    1. chain a [37594] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk