Structural Classification of Proteins
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Superfamily: UBA-like

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: All alpha proteins [46456]
  3. Fold: RuvA C-terminal domain-like [46928]
    3 helices; bundle, right-handed twist
  4. Superfamily: UBA-like [46934]
    link to SUPERFAMILY database - Superfamily

Families:

  1. UBA domain [46935] (24)
    1. DNA repair protein Hhr23a [46936]
      1. Human (Homo sapiens) [TaxId: 9606] [46937] (5)
        1. 1oqy picpicxrefxref
          flexible linkers excluded
          1. region a:160-200 [93439] picpiclink
          2. region a:317-360 [93440] picpiclink
        2. 1qze picpicxrefxref
          1. region a:160-200 [96629] picpiclink
          2. region a:317-360 [96630] picpiclink
        3. 1ify picpic
          internal UBA domain
          1. chain a [71207] picpiclink
        4. 1f4i picpic
          C-terminal UBA domain
          mutant
          1. chain a [16288] picpiclink
        5. 1dv0 picpic
          C-terminal UBA domain
          1. chain a [16289] picpiclink
    2. Sequestosome 1 (Sqstm1) [101063]
      ubiquitin-binding protein p62
      1. Human (Homo sapiens) [TaxId: 9606] [101064] (4)
        1. 2k0b picpic
          automatically matched to d1q02a_
          1. region x:1-52 [148253] picpiclink
        2. 2jy7 picpic
          automatically matched to d1q02a_
          1. region a:1-52 [148239] picpiclink
        3. 1q02 picpic
          1. chain a [95490] picpiclink
        4. 2jy8 picpic
          automatically matched to d1q02a_
          1. region a:1-52 [148240] picpiclink
    3. Auxilin-like protein Swa2p [101065]
      1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [101066] (1)
        1. 1pgy picpic
          1. chain a [94696] picpiclink
    4. Ubiquitin-protein ligase ubc1 [109719]
      1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [109720] (1)
        SQ P21734
        1. 1tte picpicxref
          mutant
          1. region a:161-215 [107295] picpiclink
    5. Ubiquitin carboxyl-terminal hydrolase 25 [109721]
      1. Mouse (Mus musculus) [TaxId: 10090] [109722] (1)
        SQ P57080 1-67
        1. 1vdl picpic
          Structural genomics target
          1. chain a [108528] picpiclink
    6. NEDD8 ultimate buster-1 (Nub1) [116824]
      1. Mouse (Mus musculus) [TaxId: 10090] [116825] (1)
        SQ P54729 469-540
        1. 1veg picpic
          Structural genomics target
          1. chain a [113634] picpiclink
    7. Ubiquitin isopeptidase T [116826]
      1. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [116827] (2)
        SQ Q9LJT6 594-665; Q8L6Y1 651-710
        1. 1vek picpic
          Structural genomics target
          1. chain a [113636] picpiclink
        2. 1wiv picpic
          Structural genomics target
          1. chain a [114680] picpiclink
    8. Rhomboid family protein At3g58460 [116828]
      1. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [116829] (1)
        SQ Q8LB17 342-401
        1. 1vg5 picpic
          1. chain a [113640] picpiclink
    9. Ubiquitin-associated protein 1, UBAP1 [116830]
      1. Human (Homo sapiens) [TaxId: 9606] [116831] (1)
        SQ Q9NZ09 381-430
        1. 1wgn picpic
          Structural genomics target
          1. chain a [114617] picpiclink
    10. UBA/UBX 33.3 kDa protein [116832]
      1. Mouse (Mus musculus) [TaxId: 10090] [116833] (1)
        SQ Q922Y1 2-52
        1. 1whc picpic
          Structural genomics target
          1. chain a [114640] picpiclink
    11. Tudor domain containing protein 3, TDRD3 [116834]
      1. Human (Homo sapiens) [TaxId: 9606] [116835] (1)
        SQ Q9H7E2 194-243
        1. 1wji picpic
          Structural genomics target
          1. chain a [114698] picpiclink
    12. DSK2 [140323]
      1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [140324] (28)
        SQ P48510 328-371! SQ P48510 328-373
        1. 2bwb picpic
          automatically matched to 2BWE A:328-371
          1. region a:328-371 [129329] picpiclink
        2. 2bwb picpic
          automatically matched to 2BWE A:328-371
          1. region b:328-370 [129330] picpiclink
        3. 2bwb picpic
          automatically matched to 2BWE A:328-371
          1. region c:328-371 [129331] picpiclink
        4. 2bwb picpic
          automatically matched to 2BWE A:328-371
          1. region d:328-371 [129332] picpiclink
        5. 2bwb picpic
          automatically matched to 2BWE A:328-371
          1. region e:328-370 [129333] picpiclink
        6. 2bwb picpic
          automatically matched to 2BWE A:328-371
          1. region f:328-370 [129334] picpiclink
        7. 2bwb picpic
          automatically matched to 2BWE A:328-371
          1. region g:328-371 [129335] picpiclink
        8. 2bwb picpic
          automatically matched to 2BWE A:328-371
          1. region h:328-370 [129336] picpiclink
        9. 2bwb picpic
          automatically matched to 2BWE A:328-371
          1. region i:328-370 [129337] picpiclink
        10. 2bwe picpicxrefxrefxref
          1. region a:328-371 [129342] picpiclink
        11. 2bwe picpicxrefxrefxref
          automatically matched to 2BWE A:328-371
          1. region b:328-371 [129343] picpiclink
        12. 2bwe picpicxrefxrefxref
          automatically matched to 2BWE A:328-371
          1. region c:328-371 [129344] picpiclink
        13. 2bwe picpicxrefxrefxref
          automatically matched to 2BWE A:328-371
          1. region d:328-371 [129345] picpiclink
        14. 2bwe picpicxrefxrefxref
          automatically matched to 2BWE A:328-371
          1. region e:328-371 [129346] picpiclink
        15. 2bwe picpicxrefxrefxref
          automatically matched to 2BWE A:328-371
          1. region f:328-371 [129347] picpiclink
        16. 2bwe picpicxrefxrefxref
          automatically matched to 2BWE A:328-371
          1. region g:328-371 [129348] picpiclink
        17. 2bwe picpicxrefxrefxref
          automatically matched to 2BWE A:328-371
          1. region h:328-371 [129349] picpiclink
        18. 2bwe picpicxrefxrefxref
          automatically matched to 2BWE A:328-371
          1. region i:328-371 [129350] picpiclink
        19. 2bwe picpicxrefxrefxref
          automatically matched to 2BWE A:328-371
          1. region j:328-371 [129351] picpiclink
        20. 2bwe picpicxrefxrefxref
          automatically matched to 2BWE A:328-371
          1. region k:328-371 [129352] picpiclink
        21. 2bwe picpicxrefxrefxref
          automatically matched to 2BWE A:328-371
          1. region l:328-371 [129353] picpiclink
        22. 2bwe picpicxrefxrefxref
          automatically matched to 2BWE A:328-371
          1. region m:328-371 [129354] picpiclink
        23. 2bwe picpicxrefxrefxref
          automatically matched to 2BWE A:328-371
          1. region n:328-371 [129355] picpiclink
        24. 2bwe picpicxrefxrefxref
          automatically matched to 2BWE A:328-371
          1. region o:328-371 [129356] picpiclink
        25. 2bwe picpicxrefxrefxref
          automatically matched to 2BWE A:328-371
          1. region p:328-370 [129357] picpiclink
        26. 2bwe picpicxrefxrefxref
          automatically matched to 2BWE A:328-371
          1. region q:328-371 [129358] picpiclink
        27. 2bwe picpicxrefxrefxref
          automatically matched to 2BWE A:328-371
          1. region r:328-371 [129359] picpiclink
        28. 1wr1 picpicxref
          1. region b:328-373 [121185] picpiclink
    13. Ubiquilin-3 [140325]
      1. Human (Homo sapiens) [TaxId: 9606] [140326] (1)
        SQ Q9H347 615-655
        1. 2dah picpic
          1. region a:8-48 [131352] picpiclink
    14. Ubiquitin-conjugating enzyme E2-25 kDa, C-terminal domain [140327]
      1. Human (Homo sapiens) [TaxId: 9606] [140328] (5)
        SQ P61086 157-198
        1. 3e46 picpicxref
          automatically matched to d1ylaa1
          complexed with ca; mutant
          1. region a:157-198 [157994] picpiclink
        2. 1yla picpicxrefxref
          1. region a:157-198 [123641] picpiclink
        3. 1yla picpicxrefxref
          automatically matched to 1YLA A:157-198
          1. region b:157-198 [123643] picpiclink
        4. 2o25 picpicxrefxrefxrefxref
          automatically matched to 1YLA A:157-198
          1. region a:157-198 [138886] picpiclink
        5. 2o25 picpicxrefxrefxrefxref
          automatically matched to 1YLA A:157-198
          1. region b:157-198 [138888] picpiclink
    15. Cbl-interacting protein p70, STS1 [140329]
      1. Human (Homo sapiens) [TaxId: 9606] [140330] (1)
        SQ Q8TF42 26-76
        1. 2cpw picpic
          1. region a:8-58 [130707] picpiclink
    16. Ubiquitin-associated protein 2-like Ubap2l [140331]
      RSGI ruh-015
      1. Mouse (Mus musculus) [TaxId: 10090] [140332] (1)
        SQ Q80X50 19-109
        1. 1wj7 picpic
          1. region a:8-98 [120976] picpiclink
    17. Trinucleotide repeat containing 6c protein, TNRC6C [140333]
      1. Human (Homo sapiens) [TaxId: 9606] [140334] (1)
        SQ Q86UE5 197-268
        1. 2dkl picpic
          1. region a:8-79 [131555] picpiclink
    18. Suppressor of T-cell receptor signaling 2 (STS-2) [140335]
      1. Human (Homo sapiens) [TaxId: 9606] [140336] (1)
        SQ P57075 20-70
        1. 2crn picpic
          1. region a:8-58 [130741] picpiclink
    19. Migration-inducing protein 19 NBR1 [140337]
      Next to Brca1 gene 1
      1. Human (Homo sapiens) [TaxId: 9606] [140338] (1)
        SQ Q14596 916-956
        1. 2cp8 picpic
          1. region a:8-48 [130695] picpiclink
    20. Ubiquilin-like protein Ubqlnl [140339]
      1. Mouse (Mus musculus) [TaxId: 10090] [140340] (1)
        SQ Q14DL0 561-610
        1. 2dna picpic
          1. region a:12-61 [131586] picpiclink
    21. Serine/threonine protein kinase LATS2 [140341]
      1. Mouse (Mus musculus) [TaxId: 10090] [140342] (1)
        SQ Q7TSJ6 98-138
        1. 2cos picpic
          1. region a:8-48 [130683] picpiclink
    22. 4931431F19Rik [140343]
      Riken cDNA clone 4931431f19
      1. Mouse (Mus musculus) [TaxId: 10090] [140344] (1)
        SQ Q9D4I8 447-507
        1. 1vej picpic
          1. region a:8-68 [120020] picpiclink
    23. UBA-domain protein mud1 [158356]
      1. Schizosaccharomyces pombe [TaxId: 4896] [158357] (2)
        SQ Q10256 295-332
        1. 1z96 picpic
          1. region a:295-332 [145960] picpiclink
        2. 1z96 picpic
          automatically matched to 1Z96 A:295-332
          1. region b:298-332 [145961] picpiclink
    24. Endocytic protein Ede1, YBL047C [158358]
      1. Saccharomyces cerevisiae [TaxId: 4932] [158359] (1)
        SQ P34216 1339-1381
        1. 2g3q picpicxref
          1. region a:1339-1381 [145181] picpiclink
  2. TS-N domain [63423] (4)
    1. Elongation factor Ts (EF-Ts), N-terminal domain [63424]
      1. Escherichia coli [TaxId: 562] [63425] (1)
        1. 1efu picpicxrefxrefxrefxref
          1. region b:1-54 [58975] picpiclink
          2. region d:1-54 [58977] picpiclink
      2. Thermus thermophilus [TaxId: 274] [63426] (1)
        1. 1aip picpicxrefxrefxrefxref
          1. region c:2-53 [58930] picpiclink
          2. region d:2-53 [58932] picpiclink
          3. region g:2-53 [58934] picpiclink
          4. region h:3-53 [58936] picpiclink
      3. Cow (Bos taurus), mitochondrial [TaxId: 9913] [116836] (1)
        SQ P43896 56-331
        1. 1xb2 picpicxrefxrefxrefxref
          1. region b:56-111 [115057] picpiclink
      4. Human (Homo sapiens), mitochondrial [TaxId: 9606] [140345] (1)
        SQ P43897 45-95
        1. 2cp9 picpic
          1. region a:8-58 [130696] picpiclink
  3. TAP-C domain-like [68973] (2)
    1. FG-binding, C-terminal domain of TAP [68974]
      1. Human (Homo sapiens) [TaxId: 9606] [68975] (2)
        1. 1oai picpic
          complexed with FxFG nucleoporin peptide
          1. chain a [81255] picpiclink
        2. 1go5 picpic
          1. chain a [65410] picpiclink
    2. NSFL1 (p97 ATPase) cofactor p47, UBA-like domain [101067]
      1. Rat (Rattus norvegicus) [TaxId: 10116] [101068] (1)
        1. 1v92 picpic
          1. chain a [100531] picpiclink
  4. CUE domain [88995] (4)
    Pfam 02845
    1. Vacuolar protein sorting-associated protein vps9 [88996]
      1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [88997] (2)
        1. 1mn3 picpic
          part of the C-terminal helix-swapped homodimer
          complexed with mse; mutant
          1. chain a [85024] picpiclink
        2. 1p3q picpicxref
          partly disordered, helix-swapped homodimer
          complexed with mse; mutant
          1. chain q [87748] picpiclink
          2. chain r [87749] picpiclink
    2. Protein Cue2 (hypothetical protein YKL090W) [88998]
      1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [88999] (1)
        1. 1otr picpicxref
          1. chain a [87413] picpiclink
    3. Toll-interacting protein [116837]
      1. Human (Homo sapiens) [TaxId: 9606] [116838] (1)
        SQ Q9H0E2 229-274
        1. 1wgl picpic
          Structural genomics target
          1. chain a [114615] picpiclink
    4. Activating signal cointegrator 1 complex subunit 2 [140346]
      1. Human (Homo sapiens) [TaxId: 9606] [140347] (1)
        SQ Q9H1I8 463-525
        1. 2di0 picpic
          1. region a:8-70 [131521] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk