Fold: Retrovirus capsid protein, N-terminal core domain

core: 5 helices; bundle

Lineage:

1. Root: scop
2. Class: All alpha proteins [46456]
3. Fold: Retrovirus capsid protein, N-terminal core domain [47942]
   core: 5 helices; bundle

Superfamilies:

1. Retrovirus capsid protein, N-terminal core domain [47943] (1)
   uperfamily
   1. Retrovirus capsid protein, N-terminal core domain [47944] (5)
      1. HIV-1 capsid protein [47945]
         1. Human immunodeficiency virus type 1 [TaxId: 11676] [47946] (16)
            1. 2pxr
               automatically matched to d1l6na2
               complexed with cl, zn
               1. region c:1-145 [149918]
            2. 1m9f
               mutant
               1. chain c [84900]
               2. chain d [84901]
            3. 1m9x
               mutant
               1. chain c [84907]
               2. chain d [84908]
               3. chain g [84911]
               4. chain h [84912]
            4. 1m9e
               mutant
               1. chain c [84896]
               2. chain d [84897]
            5. 1m9d
               mutant
               1. chain c [84892]
               2. chain d [84893]
            6. 1m9y
               mutant
               1. chain c [84915]
               2. chain d [84916]
               3. chain g [84919]
               4. chain h [84920]
            7. 1m9c
               1. chain c [84888]
               2. chain d [84889]
            8. 2gol
               automatically matched to d1l6na2
               complexed with so4
               1. region b:144-278 [135439]
            9. 2gol
               automatically matched to d1l6na2
               complexed with so4
               1. region d:144-278 [135440]
            10. 1ak4
                mutant
                1. chain c [18321]
                2. chain d [18322]
            11. 1e6j
                mutant
                1. region p:11-147 [18323]
            12. 2jpr
                automatically matched to d1l6na2
                complexed with jpr
                1. region a:1-145 [148169]
            13. 1afv
                complexed with pb
                1. chain a [18324]
                2. chain b [18325]
            14. 1l6n
                1. region a:131-289 [73625]
            15. 1gwp
                1. chain a [70674]
            16. 3dik
                automatically matched to d1e6jp2
                1. region a:11-147 [157752]
      2. EIAV capsid protein p26 [47947]
         1. Equine infectious anemia virus [TaxId: 11665] [47948] (2)
            1. 2eia
               1. region a:17-147 [18329]
               2. region b:17-147 [18330]
            2. 1eia
               1. region a:16-147 [18331]
      3. HTLV-I capsid protein [47949]
         1. Human T-cell leukemia virus type 1 [TaxId: 11908] [47950] (2)
            1. 1g03
               1. chain a [60162]
            2. 1qrj
               1. region a:,b:16-130 [18332]
      4. RSV capsid protein [47951]
         1. Rous sarcoma virus [TaxId: 11886] [47952] (3)
            1. 1em9
               N-terminal domain only
               complexed with mg
               1. chain a [18333]
               2. chain b [18334]
            2. 1p7n
               contains an upstream extension of gag p10 sequence, residues -28-0
               1. chain a [94308]
            3. 1d1d
               1. region a:11-150 [18335]
      5. AKV capsid [116949]
         1. AKV murine leukemia virus [TaxId: 11791] [116950] (1)
            SQ P03336 215-345 # fragment of the core shell protein p30 (215-477)
            1. 1u7k
               1. chain a [113087]
               2. chain b [113088]
               3. chain c [113089]
               4. chain d [113090]
               5. chain e [113091]
               6. chain f [113092]

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk