Structural Classification of Proteins

Superfamily: Retrovirus capsid protein, N-terminal core domain

: uperfamily

Lineage:

Root: scop
Class: All alpha proteins [46456]
Fold: Retrovirus capsid protein, N-terminal core domain [47942]
core: 5 helices; bundle
Superfamily: Retrovirus capsid protein, N-terminal core domain [47943]
uperfamily

Families:

Retrovirus capsid protein, N-terminal core domain [47944] (5)
1. HIV-1 capsid protein [47945]
  1. Human immunodeficiency virus type 1 [TaxId: 11676] [47946] (16)
    1. 2pxr
      automatically matched to d1l6na2
      complexed with cl, zn
      1. region c:1-145 [149918]
    2. 1m9f
      mutant
      1. chain c [84900]
      2. chain d [84901]
    3. 1m9x
      mutant
      1. chain c [84907]
      2. chain d [84908]
      3. chain g [84911]
      4. chain h [84912]
    4. 1m9e
      mutant
      1. chain c [84896]
      2. chain d [84897]
    5. 1m9d
      mutant
      1. chain c [84892]
      2. chain d [84893]
    6. 1m9y
      mutant
      1. chain c [84915]
      2. chain d [84916]
      3. chain g [84919]
      4. chain h [84920]
    7. 1m9c
      1. chain c [84888]
      2. chain d [84889]
    8. 2gol
      automatically matched to d1l6na2
      complexed with so4
      1. region b:144-278 [135439]
    9. 2gol
      automatically matched to d1l6na2
      complexed with so4
      1. region d:144-278 [135440]
    10. 1ak4
      mutant
      1. chain c [18321]
      2. chain d [18322]
    11. 1e6j
      mutant
      1. region p:11-147 [18323]
    12. 2jpr
      automatically matched to d1l6na2
      complexed with jpr
      1. region a:1-145 [148169]
    13. 1afv
      complexed with pb
      1. chain a [18324]
      2. chain b [18325]
    14. 1l6n
      1. region a:131-289 [73625]
    15. 1gwp
      1. chain a [70674]
    16. 3dik
      automatically matched to d1e6jp2
      1. region a:11-147 [157752]
2. EIAV capsid protein p26 [47947]
  1. Equine infectious anemia virus [TaxId: 11665] [47948] (2)
    1. 2eia
      1. region a:17-147 [18329]
      2. region b:17-147 [18330]
    2. 1eia
      1. region a:16-147 [18331]
3. HTLV-I capsid protein [47949]
  1. Human T-cell leukemia virus type 1 [TaxId: 11908] [47950] (2)
    1. 1g03
      1. chain a [60162]
    2. 1qrj
      1. region a:,b:16-130 [18332]
4. RSV capsid protein [47951]
  1. Rous sarcoma virus [TaxId: 11886] [47952] (3)
    1. 1em9
      N-terminal domain only
      complexed with mg
      1. chain a [18333]
      2. chain b [18334]
    2. 1p7n
      contains an upstream extension of gag p10 sequence, residues -28-0
      1. chain a [94308]
    3. 1d1d
      1. region a:11-150 [18335]
5. AKV capsid [116949]
  1. AKV murine leukemia virus [TaxId: 11791] [116950] (1)
    SQ P03336 215-345 # fragment of the core shell protein p30 (215-477)
    1. 1u7k
      1. chain a [113087]
      2. chain b [113088]
      3. chain c [113089]
      4. chain d [113090]
      5. chain e [113091]
      6. chain f [113092]