Structural Classification of Proteins
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Family: Retrovirus capsid protein, N-terminal core domain

Lineage:

  1. Root: scop
  2. Class: All alpha proteins [46456]
  3. Fold: Retrovirus capsid protein, N-terminal core domain [47942]
    core: 5 helices; bundle
  4. Superfamily: Retrovirus capsid protein, N-terminal core domain [47943]
    link to SUPERFAMILY database - Superfamily
  5. Family: Retrovirus capsid protein, N-terminal core domain [47944]

Protein Domains:

  1. HIV-1 capsid protein [47945]
    1. Human immunodeficiency virus type 1 [TaxId: 11676] [47946] (16)
      1. 2pxr picpic
        automatically matched to d1l6na2
        complexed with cl, zn
        1. region c:1-145 [149918] picpiclink
      2. 1m9f picpicxref
        mutant
        1. chain c [84900] picpiclink
        2. chain d [84901] picpiclink
      3. 1m9x picpicxref
        mutant
        1. chain c [84907] picpiclink
        2. chain d [84908] picpiclink
        3. chain g [84911] picpiclink
        4. chain h [84912] picpiclink
      4. 1m9e picpicxref
        mutant
        1. chain c [84896] picpiclink
        2. chain d [84897] picpiclink
      5. 1m9d picpicxref
        mutant
        1. chain c [84892] picpiclink
        2. chain d [84893] picpiclink
      6. 1m9y picpicxref
        mutant
        1. chain c [84915] picpiclink
        2. chain d [84916] picpiclink
        3. chain g [84919] picpiclink
        4. chain h [84920] picpiclink
      7. 1m9c picpicxref
        1. chain c [84888] picpiclink
        2. chain d [84889] picpiclink
      8. 2gol picpicxref
        automatically matched to d1l6na2
        complexed with so4
        1. region b:144-278 [135439] picpiclink
      9. 2gol picpicxref
        automatically matched to d1l6na2
        complexed with so4
        1. region d:144-278 [135440] picpiclink
      10. 1ak4 picpicxref
        mutant
        1. chain c [18321] picpiclink
        2. chain d [18322] picpiclink
      11. 1e6j picpicxrefxrefxrefxrefxref
        mutant
        1. region p:11-147 [18323] picpiclink
      12. 2jpr picpic
        automatically matched to d1l6na2
        complexed with jpr
        1. region a:1-145 [148169] picpiclink
      13. 1afv picpicxrefxrefxrefxref
        complexed with pb
        1. chain a [18324] picpiclink
        2. chain b [18325] picpiclink
      14. 1l6n picpicxref
        1. region a:131-289 [73625] picpiclink
      15. 1gwp picpic
        1. chain a [70674] picpiclink
      16. 3dik picpicxref
        automatically matched to d1e6jp2
        1. region a:11-147 [157752] picpiclink
  2. EIAV capsid protein p26 [47947]
    1. Equine infectious anemia virus [TaxId: 11665] [47948] (2)
      1. 2eia picpicxref
        1. region a:17-147 [18329] picpiclink
        2. region b:17-147 [18330] picpiclink
      2. 1eia picpicxref
        1. region a:16-147 [18331] picpiclink
  3. HTLV-I capsid protein [47949]
    1. Human T-cell leukemia virus type 1 [TaxId: 11908] [47950] (2)
      1. 1g03 picpic
        1. chain a [60162] picpiclink
      2. 1qrj picpicxref
        1. region a:,b:16-130 [18332] picpiclink
  4. RSV capsid protein [47951]
    1. Rous sarcoma virus [TaxId: 11886] [47952] (3)
      1. 1em9 picpic
        N-terminal domain only
        complexed with mg
        1. chain a [18333] picpiclink
        2. chain b [18334] picpiclink
      2. 1p7n picpic
        contains an upstream extension of gag p10 sequence, residues -28-0
        1. chain a [94308] picpiclink
      3. 1d1d picpicxref
        1. region a:11-150 [18335] picpiclink
  5. AKV capsid [116949]
    1. AKV murine leukemia virus [TaxId: 11791] [116950] (1)
      SQ P03336 215-345 # fragment of the core shell protein p30 (215-477)
      1. 1u7k picpic
        1. chain a [113087] picpiclink
        2. chain b [113088] picpiclink
        3. chain c [113089] picpiclink
        4. chain d [113090] picpiclink
        5. chain e [113091] picpiclink
        6. chain f [113092] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk