Structural Classification of Proteins
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Superfamily: GatB/YqeY motif

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: All alpha proteins [46456]
  3. Fold: GatB/YqeY motif [89094]
    multihelical; consists of two different alpha-helical bundles (4-helical and 3-helical)
  4. Superfamily: GatB/YqeY motif [89095]
    link to SUPERFAMILY database - Superfamily

Families:

  1. GatB/YqeY domain [89096] (1)
    1. Hypothetical protein YqeY [89097]
      1. Bacillus subtilis [TaxId: 1423] [89098] (1)
        1. 1ng6 picpic
          structural genomics
          1. chain a [85670] picpiclink
  2. GatB/GatE C-terminal domain-like [140757] (3)
    assigned to the same Pfam 02637 family as YeqY by the presence of a common sequence motif with an alpha-hairpin structure
    1. Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, C-terminal domain [140758]
      1. Staphylococcus aureus [TaxId: 1280] [140759] (5)
        SQ P64201 294-400
        1. 2f2a picpicxrefxrefxref
          automatically matched to 2DF4 B:294-400
          complexed with gln, mg
          1. region b:294-400 [132802] picpiclink
        2. 2g5h picpicxrefxrefxref
          automatically matched to 2DF4 B:294-400
          complexed with mg
          1. region b:294-400 [134659] picpiclink
        3. 2dqn picpicxrefxrefxref
          automatically matched to 2DF4 B:294-400
          complexed with asn, mg
          1. region b:294-400 [131640] picpiclink
        4. 2df4 picpicxrefxrefxref
          complexed with mn
          1. region b:294-400 [131446] picpiclink
        5. 2g5i picpicxrefxrefxref
          automatically matched to 2DF4 B:294-400
          complexed with adp, mg
          1. region b:294-400 [134663] picpiclink
    2. Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE, C-terminal domain [140760]
      1. Methanobacterium thermoautotrophicum [TaxId: 145262] [140761] (2)
        SQ O26803 445-503
        1. 2d6f picpicxrefxrefxrefxrefxrefxrefxrefxref
          complexed with zn
          1. region c:445-503 [131307] picpiclink
        2. 2d6f picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2D6F C:445-503
          complexed with zn
          1. region d:445-503 [131310] picpiclink
      2. Pyrococcus abyssi [TaxId: 29292] [140762] (2)
        SQ Q9V0U0 457-512
        1. 1zq1 picpicxrefxrefxrefxrefxrefxrefxrefxref
          complexed with asp
          1. region c:457-512 [125493] picpiclink
        2. 1zq1 picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 1ZQ1 C:457-512
          complexed with asp
          1. region d:457-512 [125496] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk