Structural Classification of Proteins
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Protein: Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD from Pyrococcus abyssi [TaxId: 29292]

SQ Q9V0T9 76-438

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: Glutaminase/Asparaginase [53773]
    consists of two non-similar alpha/beta domains, 3 layers (a/b/a) each
    Domain 1 has mixed beta-sheet of 6 strands, order 213456, strand 6 is antiparallel to the rest; left-handed crossover connection between strands 4 and 5
    Domain 2 has parallel beta-sheet of 4 strands, order 1234
  4. Superfamily: Glutaminase/Asparaginase [53774]
    link to SUPERFAMILY database - Superfamily
  5. Family: Glutaminase/Asparaginase [53775]
  6. Protein: Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD [142776]
  7. Species: Pyrococcus abyssi [TaxId: 29292] [142777]
    SQ Q9V0T9 76-438

PDB Entry Domains:

  1. 1zq1 picpicxrefxrefxrefxrefxrefxrefxrefxref
    complexed with asp
    1. region a:76-438 [125490] picpiclink
  2. 1zq1 picpicxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to 1ZQ1 A:76-438
    complexed with asp
    1. region b:76-438 [125492] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk