Structural Classification of Proteins
home mail help root up expand collapse

Superfamily: Ferritin-like

contains bimetal-ion centre in the middle of the bundle
link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: All alpha proteins [46456]
  3. Fold: Ferritin-like [47239]
    core: 4 helices; bundle, closed, left-handed twist; 1 crossover connection
  4. Superfamily: Ferritin-like [47240]
    contains bimetal-ion centre in the middle of the bundle
    link to SUPERFAMILY database - Superfamily

Families:

  1. Ferritin [47241] (34)
    1. Rubrerythrin, N-terminal domain [47242]
      1. Desulfovibrio vulgaris [TaxId: 881] [47243] (10) picpic
        SQ P24931
      2. Archaeon Pyrococcus furiosus [TaxId: 2261] [101129] (3) picpic
    2. Hypothetical rubrerythrin [101130]
      1. Archaeon Sulfolobus tokodaii [TaxId: 111955] [101131] (1) picpic
    3. Hypothetical protein TM1526 [101132]
      1. Thermotoga maritima [TaxId: 2336] [101133] (1) picpic
    4. Bacterioferritin (cytochrome b1) [47244]
      binds heme between two subunits; 24-mer
      1. Escherichia coli [TaxId: 562] [47245] (20) picpic
      2. Rhodobacter capsulatus [TaxId: 1061] [69004] (1) picpic
      3. Desulfovibrio desulfuricans [TaxId: 876] [89025] (3) picpic
      4. Azotobacter vinelandii [TaxId: 354] [140431] (24) picpic
        SQ P22759 1-155
    5. Non-hem ferritin [63524]
      1. Escherichia coli, FtnA [TaxId: 562] [63525] (1) picpic
      2. Campylobacter jejuni [TaxId: 197] [69005] (1) picpic
      3. Thermotoga maritima [TaxId: 2336] [109783] (1) picpic
        SQ Q9X0L2
      4. Archaeon Archaeoglobus fulgidus [TaxId: 2234] [140432] (24) picpic
        SQ O29424 3-164
    6. Dodecameric ferritin homolog [47250]
      1. Escherichia coli, Dps [TaxId: 562] [47251] (7) picpic
        ferritin homolog that binds to and protects DNA
      2. Listeria innocua [TaxId: 1642] [47252] (43) picpic
      3. Bacillus anthracis, Dlp-1 [TaxId: 1392] [74705] (1) picpic
      4. Bacillus anthracis, Dlp-2 [TaxId: 1392] [74706] (1) picpic
      5. Bacillus brevis, Dps [TaxId: 1393] [89026] (1) picpic
      6. Agrobacterium tumefaciens, Dps [TaxId: 358] [89027] (1) picpic
      7. Helicobacter pylori, Nap [TaxId: 210] [81743] (1) picpic
      8. Streptococcus suis [TaxId: 1307] [101134] (37) picpic
      9. Archaeon Halobacterium salinarum [TaxId: 2242] [101135] (5) picpic
        SQ Q9HMP7
      10. Mycobacterium smegmatis [TaxId: 1772] [109784] (20) picpic
        SQ Q8VP75
      11. Lactococcus lactis, DpsB [TaxId: 1358] [140433] (12) picpic
        SQ A2RJ45 3-173
      12. Lactococcus lactis, DpsA [TaxId: 1358] [140434] (4) picpic
        SQ A2RLG8 6-173
      13. Treponema pallidum, TpF1 [TaxId: 160] [140435] (16) picpic
        SQ P16665 26-176
    7. (Apo)ferritin [47246]
      1. Human (Homo sapiens), H chain [TaxId: 9606] [47247] (3) picpic
      2. Horse (Equus caballus), L chain [TaxId: 9796] [47248] (20) picpic
      3. Mouse (Mus musculus) [TaxId: 10090] [63526] (2) picpic
      4. Bullfrog (Rana catesbeiana) [TaxId: 8400] [47249] (7) picpic
      5. Human (Homo sapiens), mitocondial isoform [TaxId: 9606] [109785] (1) picpic
        SQ Q8N4E7
      6. Cabbage looper(Trichoplusia ni), L chain [TaxId: 7111] [140436] (12) picpic
        SQ Q52SA8 1-200
      7. Cabbage looper(Trichoplusia ni), H chain [TaxId: 7111] [140437] (12) picpic
        SQ Q8WQX3 21-211
    8. Hypothetical protein PF1190 [140438]
      significant sequence similarity to the half-ferritin family
      1. Archaeon Pyrococcus furiosus [TaxId: 2261] [140439] (2) picpic
        SQ Q8U1L6 9-166
    9. Nigerythrin, N-terminal domain [140440]
      1. Desulfovibrio vulgaris [TaxId: 881] [140441] (6) picpic
        SQ P30820 1-166
  2. Ribonucleotide reductase-like [47253] (18)
    1. Methane monooxygenase hydrolase alpha subunit [88789]
      1. Methylococcus capsulatus [TaxId: 414] [88790] (43) picpic
      2. Methylosinus trichosporium [TaxId: 426] [88791] (2) picpic
    2. Methane monooxygenase hydrolase beta subunit [88792]
      1. Methylococcus capsulatus [TaxId: 414] [88793] (31) picpic
      2. Methylosinus trichosporium [TaxId: 426] [88794] (2) picpic
    3. Ribonucleotide reductase R2 [47257]
      1. Escherichia coli [TaxId: 562] [47258] (24) picpic
      2. Salmonella typhimurium [TaxId: 90371] [47259] (4) picpic
      3. Corynebacterium ammoniagenes [TaxId: 1697] [69006] (6) picpic
      4. Mouse (Mus musculus) [TaxId: 10090] [47260] (5) picpic
        SQ P11157
      5. Baker's yeast (Saccharomyces cerevisiae), Y2 [TaxId: 4932] [88795] (2) picpic
        SQ P09938
      6. Baker's yeast (Saccharomyces cerevisiae), Y4 [TaxId: 4932] [88796] (2) picpic
        SQ P49723
      7. Chlamydia trachomatis [TaxId: 813] [109786] (1) picpic
        SQ O84835
      8. Mycobacterium tuberculosis [TaxId: 1773] [109787] (1) picpic
        SQ Q50549 10-291
      9. Human (Homo sapiens), RRM2 [TaxId: 9606] [158401] (1) picpic
        SQ P31350 66-350
    4. delta 9-stearoyl-acyl carrier protein desaturase [47261]
      1. Castor bean (Ricinus communis) [TaxId: 3988] [47262] (5) picpic
    5. Phenylacetic acid degradation protein PaaC [101136]
      1. Escherichia coli [TaxId: 562] [101137] (1) picpic
    6. Toluene, o-xylene monooxygenase oxygenase subunit TouA [109788]
      contains the TouB(TmoB)-binding YHS (sub)domain (Pfam 04945) in the C-terminal part (401-450)
      1. Pseudomonas stutzeri [TaxId: 316] [109789] (5) picpic
        SQ O87798
    7. Toluene, o-xylene monooxygenase oxygenase subunit TouE [109790]
      1. Pseudomonas stutzeri [TaxId: 316] [109791] (6) picpic
        SQ O87802
    8. Possible acyl-[acyl-carrier protein] desaturase [140442]
      1. Mycobacterium tuberculosis [TaxId: 1773] [140443] (1) picpic
        SQ O53442 8-274
  3. Manganese catalase (T-catalase) [100951] (2)
    1. Manganese catalase (T-catalase) [47263]
      1. Lactobacillus plantarum [TaxId: 1590] [74707] (3) picpic
      2. Thermus thermophilus [TaxId: 274] [140444] (2) picpic
        SQ Q5SM21 1-299
  4. YciF-like [140445] (2)
    Pfam 05974; DUF892
    1. Hypothetical ptotein RPA3308 [140446]
      putative structural protein
      1. Rhodopseudomonas palustris [TaxId: 1076] [140447] (2) picpic
        SQ Q6N4M9 1-160
    2. Hypothetical protein YciF [140448]
      1. Escherichia coli [TaxId: 562] [140449] (2) picpic
        SQ P21362 3-161
  5. half-ferritin [140450] (1)
    comprise of alpha-hairpin subunits forming the ferritin-like four-helical bundle; assembles further in a homodecamer
    1. Hypothetical protein NE0167 [140451]
      1. Nitrosomonas europaea [TaxId: 915] [140452] (10) picpic
        SQ Q82XT5 4-94
  6. PMT1231-like [158402] (1)
    PfamB 016165
    1. Hypothetical protein PMT1231 [158403]
      1. Prochlorococcus marinus [TaxId: 1219] [158404] (1) picpic
        SQ Q7V6D4 20-241
  7. MiaE-like [158405] (1)
    Pfam 06175; tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)
    1. Putative tRNA-(Ms(2)io(6)a)-hydroxylase PP2188 [158406]
      1. Pseudomonas putida [TaxId: 303] [158407] (2) picpic
        SQ Q88KV1 3-201
  8. AMB4284-like [158408] (1)
    possible rubrerythrin
    1. Uncharacterized protein AMB4284 homologue [158409]
      1. Magnetospirillum magnetotacticum ms-1 [TaxId: 272627] [158410] (1) picpic
        SQ Q2VZ87 3-154
  9. Rv2844-like [158411] (1)
    PfamB 061364
    1. Hypothetical protein Rv2844 [158412]
      1. Mycobacterium tuberculosis [TaxId: 1773] [158413] (1) picpic
        SQ O05815 17-158
Enter search key:
MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk