Structural Classification of Proteins
home mail help root up expand collapse

Family: Retrovirus capsid protein C-terminal domain

Lineage:

  1. Root: scop
  2. Class: All alpha proteins [46456]
  3. Fold: Acyl carrier protein-like [47335]
    4 helices, bundle; helix 3 is shorter than others; up-and-down
  4. Superfamily: Retrovirus capsid dimerization domain-like [47353]
    link to SUPERFAMILY database - Superfamily
  5. Family: Retrovirus capsid protein C-terminal domain [47354]

Protein Domains:

  1. EIAV capsid protein p26 [47355]
    1. Equine infectious anemia virus [TaxId: 11665] [47356] (2)
      1. 2eia picpicxref
        1. region a:148-222 [16949] picpiclink
        2. region b:148-220 [16950] picpiclink
      2. 1eia picpicxref
        1. region a:148-222 [16951] picpiclink
  2. HTLV-I capsid protein [47357]
    1. Human T-cell leukemia virus type 1 [TaxId: 11908] [47358] (1)
      1. 1qrj picpicxref
        1. region b:131-214 [16952] picpiclink
  3. HIV capsid protein, dimerisation domain [47359]
    1. Human immunodeficiency virus type 1 [TaxId: 11676] [47360] (7)
      1. 1a8o picpic
        mutant
        1. chain a [16953] picpiclink
      2. 2buo picpic
        automatically matched to d1a43__
        complexed with acy
        1. region a:148-219 [129224] picpiclink
      3. 1baj picpic
        extended at the C-terminus to include a 14-residue GAG p2 domain
        1. chain a [16954] picpiclink
      4. 1e6j picpicxrefxrefxrefxrefxref
        mutant
        1. region p:148-220 [16956] picpiclink
      5. 1a43 picpic
        1. chain a [16955] picpiclink
      6. 1aum picpic
        1. chain a [16957] picpiclink
      7. 3dik picpicxref
        automatically matched to d1e6jp1
        1. region a:148-219 [157751] picpiclink
  4. RSV capsid protein [47361]
    1. Rous sarcoma virus [TaxId: 11886] [47362] (2)
      1. 1d1d picpicxref
        1. region a:151-230 [16958] picpiclink
      2. 1eoq picpic
        C-terminal domain only
        1. chain a [16959] picpiclink
Enter search key:
MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk