Superfamily: KorB DNA-binding domain-like

contains HTH motif in the common core; also contains extra N-terminal helix and C-terminal subdomain of 4 helices (left-handed superhelix)
uperfamily

Lineage:

1. Root: scop
2. Class: All alpha proteins [46456]
3. Fold: DNA/RNA-binding 3-helical bundle [46688]
   core: 3-helices; bundle, closed or partly opened, right-handed twist; up-and down
4. Superfamily: KorB DNA-binding domain-like [109709]
   contains HTH motif in the common core; also contains extra N-terminal helix and C-terminal subdomain of 4 helices (left-handed superhelix)
   uperfamily

Families:

1. KorB DNA-binding domain-like [109710] (2)
   [N-terminal half of Pfam 06613]
   1. Transcriptional repressor protein KorB DNA-binding domain [109711]
      1. Escherichia coli [TaxId: 562] [109712] (1)
         SQ P07674 137-252 # structure of the C-terminal domain (297-358) is determined separately; scop_sp 69244
         1. 1r71
            complexed with bru
            1. chain a [104823]
            2. chain b [104824]
            3. chain c [104825]
            4. chain d [104826]
   2. Putative partitioning protein ParB/Spo0J [109713]
      1. Thermus thermophilus [TaxId: 274] [109714] (1)
         SQ Q9LCY0 # Fragment
         1. 1vz0
            complexed with co, mg
            1. region a:116-208 [108929]
            2. region b:116-208 [108931]
            3. region c:116-208 [108933]
            4. region d:116-208 [108935]
            5. region e:116-208 [108937]
            6. region f:116-208 [108939]
            7. region g:116-208 [108941]
            8. region h:116-208 [108943]

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk