Structural Classification of Proteins
Class: Peptides
Peptides and fragments. Not a true class
Lineage:
Root:
scop
Class:
Peptides
[58231]
Peptides and fragments. Not a true class
Folds:
Membrane ion channel-forming peptide antibiotics containing D-aminoacids
[58232] (1)
Membrane ion channel-forming peptide antibiotics containing D-aminoacids
[58233] (2)
uperfamily
Gramicidin
[58234] (1)
Gramicidin [58235]
different conformations
Bacillus brevis
[TaxId: 1393]
[58236] (21)
1alz
chain a
[46039]
chain b
[46040]
1al4
chain a
[46041]
chain b
[46042]
1alx
chain a
[46043]
chain b
[46044]
1tk2
complexed with ca, orn
chain y
[107068]
1av2
chain a
[46045]
chain b
[46046]
chain c
[46047]
chain d
[46048]
1bdw
chain a
[46031]
chain b
[46032]
1c4d
chain a
[46049]
chain b
[46050]
chain c
[46051]
chain d
[46052]
1gmk
chain a
[46053]
chain b
[46054]
chain c
[46055]
chain d
[46056]
1mic
chain a
[46037]
chain b
[46038]
1mag
chain a
[46033]
chain b
[46034]
1tkq
Mini-gramicidin A
chain a
[107108]
chain b
[107109]
1ng8
chain a
[80478]
chain b
[80479]
1nrm
chain a
[80695]
chain b
[80696]
1nru
chain a
[80697]
chain b
[80698]
1nt5
chain a
[80726]
chain b
[80727]
1nt6
chain a
[80728]
chain b
[80729]
1kqe
chain a
[77486]
chain b
[77487]
1jno
chain a
[63198]
chain b
[63199]
1jo3
chain a
[63203]
chain b
[63204]
1jo4
chain a
[63205]
chain b
[63206]
1grm
chain a
[46035]
chain b
[46036]
Peptaibol
[58237] (8)
Chrysospermin C [58238]
Hypomyces chrysospermus, congruent with Apiocrea chrysosperma
[TaxId: 5131]
[58239] (1)
1ee7
chain a
[46057]
Zervamicin IIb [70003]
Emericellopsis salmosynnemata
[TaxId: 118885]
[70004] (2)
1r9u
chain a
[111749]
1ih9
chain a
[66141]
Antiamoebin I [82954]
Emericellopsis
[TaxId: 45244]
[82955] (1)
1gq0
chain a
[76263]
Alamecitin [58241]
Trichoderma viride
[TaxId: 5547]
[58242] (1)
1amt
chain a
[46058]
chain b
[46059]
chain c
[46060]
Trichotoxin_a50e [82956]
Trichoderma viride
[TaxId: 5547]
[82957] (1)
1m24
chain a
[78466]
chain b
[78467]
Cephaibol A [103698]
Acremonium tubakii
[TaxId: 146077]
[103699] (1)
1ob4
chain a
[92749]
Cephaibol B [103700]
Acremonium tubakii
[TaxId: 146077]
[103701] (1)
1ob6
chain a
[92750]
chain b
[92751]
Cephaibol C [103702]
Acremonium tubakii
[TaxId: 146077]
[103703] (1)
1ob7
chain a
[92752]
Lantibiotic peptides
[58243] (1)
peptide antibiotic
Lantibiotic peptides
[58244] (3)
uperfamily
Actagardine
[58245] (1)
Actagardine [58246]
Actinoplanes liguriae
[TaxId: 69484]
[58247] (1)
1aj1
chain a
[46061]
Mersacidin
[58248] (1)
Mersacidin [58249]
Bacillus sp., Hil Y-85
[TaxId: 1409]
[58250] (4)
1qow
chain a
[46062]
chain b
[46063]
chain c
[46064]
chain d
[46065]
chain e
[46066]
chain f
[46067]
1mqx
chain a
[85055]
1mqy
chain a
[85056]
1mqz
chain a
[85057]
Nisin
[111494] (1)
Nisin [111495]
Lactococcus lactis
[TaxId: 1358]
[111496] (1)
1wco
region n:1-34
[145818]
Leucocin-like bacteriocin
[100898] (1)
consists of a conserved, disulfide-containing N-terminal region (forming a beta-sheet) and a C-terminal helix
Leucocin-like bacteriocin
[100899] (1)
uperfamily
Leucocin-like bacteriocin
[100900] (3)
Leucocin [58254]
antibacterial peptide, bacteriocin
Leuconostoc gelidum
[TaxId: 1244]
[58255] (3)
1cw6
chain a
[46069]
2leu
chain a
[46068]
3leu
chain a
[46070]
Sakacin P [103704]
Lactobacillus sake
[TaxId: 1599]
[103705] (3)
1ohn
chain a
[93026]
1og7
chain a
[92865]
1ohm
chain a
[93025]
Carnobacteriocin B2 [58276]
Carnobacterium piscicola
[TaxId: 2751]
[58277] (2)
1cw5
chain a
[46086]
1ry3
chain a
[98084]
Antimicrobial beta-hairpin
[58251] (1)
contains beta-hairpin crosslinked by disulfide bridge(s)
Antimicrobial beta-hairpin
[58252] (8)
not a true superfamily
uperfamily
Insect defense peptide thanatin
[58256] (1)
Insect defense peptide thanatin [58257]
Podisus maculiventris
[TaxId: 29025]
[58258] (1)
8tfv
chain a
[46071]
Androctonin
[58259] (1)
Androctonin [58260]
Scorpion (Androctonus australis)
[TaxId: 6858]
[58261] (1)
1cz6
chain a
[46072]
Gomesin
[75725] (1)
Gomesin [75726]
Mygalomorphae spider (Acanthoscurria gomesiana)
[TaxId: 115339]
[75727] (1)
1kfp
chain a
[72423]
Tachyplesin I
[82958] (2)
Tachyplesin I [82959]
horseshoe crab antimicrobial peptide
Japanese horseshoe crab (Tachypleus tridentatus)
[TaxId: 6853]
[82960] (4)
1ma5
chain a
[78885]
1ma2
chain a
[78882]
1ma4
chain a
[78884]
1ma6
chain a
[78886]
synthetic, polyphemusin I
[111497] (1)
1rkk
chain a
[104966]
theta defensin-like
[58262] (2)
Protegrin 1 (PG1) [58263]
Pig (Sus scrofa)
[TaxId: 9823]
[58264] (1)
1pg1
chain a
[46073]
RTD-1 [64621]
a cyclic antimicrobial defensin from rhesus macaque leukocytes
Synthetic, based on Rhesus macaque sequence
[64622] (1)
1hvz
chain a
[61295]
Lactoferricin B (lfcinb)
[58265] (1)
Lactoferricin B (lfcinb) [58266]
Antimicrobial peptide derived from bovine lactoferrin
Synthetic, based on Bos taurus sequence
[58267] (1)
1lfc
chain a
[46074]
Hepcidin
[82961] (2)
Hepcidin [82962]
Synthetic, based on human sequence
[82963] (2)
1m4e
hepcidin-20
chain a
[78600]
1m4f
hepcidin-25
chain a
[78601]
synthetic, based on the hybrid white striped bass sequence
[118385] (1)
SQ
P82951
65-85
1s6w
chain a
[112043]
Cyclic trypsin inhibitor STFI-1
[90265] (1)
Cyclic trypsin inhibitor STFI-1 [90266]
Sunflower (Helianthus annuus l.)
[TaxId: 4232]
[90267] (2)
1o8y
an acyclic permutant
chain a
[86682]
1o8z
an acyclic permutant
chain a
[86683]
Antimicrobial helix
[58268] (1)
antibiotic peptide
Antimicrobial helix
[58269] (5)
not a true superfamily
uperfamily
Magainin
[58270] (2)
Magainin 2 [58271]
Xenopus laevis
[TaxId: 8355]
[58272] (2)
2mag
chain a
[46075]
1dum
bound to phospholipid vesicles
chain a
[59136]
chain b
[59137]
Cecropin A-Magainin 2 hybrid peptide [58273]
synthetic, hybrid of Hyalophora cecropia and Xenopus laevis sequences
[58274] (10)
1d9l
chain a
[46080]
1f0f
chain a
[46083]
1f0h
chain a
[46085]
1f0e
chain a
[46076]
1f0d
chain a
[46081]
1d9o
chain a
[46077]
1f0g
chain a
[46084]
1d9j
chain a
[46082]
1d9m
chain a
[46079]
1d9p
chain a
[46078]
Moricin
[75728] (2)
Moricin [75729]
Silkworm (Bombyx mori)
[TaxId: 7091]
[75730] (1)
1kv4
chain a
[73051]
Manduca sexta
[TaxId: 7130]
[161288] (1)
2jr8
automatically matched to d1kv4a_
region a:2-41
[148184]
Tachykinin peptides
[82964] (3)
Kassinin [82965]
Frog (Kassina senegalensis)
[TaxId: 8415]
[82966] (1)
1myu
chain a
[79677]
Eledoisin [82967]
Octopod (Eledone moschata)
[TaxId: 6641]
[82968] (1)
1mxq
chain a
[79670]
Neurokinin A [103706]
Synthetic, mammalian sequence
[103707] (1)
1n6t
chain a
[91690]
Cytotoxic linear peptide IsCT
[118386] (1)
Cytotoxic linear peptide IsCT [118387]
Scorpion (Opisthacanthus madagascariensis)
[TaxId: 167108]
[118388] (4)
SQ
Q8MMJ7
24-36
1t52
chain a
[112251]
1t54
chain a
[112252]
1t51
chain a
[112250]
1t55
chain a
[112253]
Distinctin
[144312] (2)
Distinctin chain B [144313]
synthetic
[144314] (2)
1xkm
region b:1-25
[122083]
1xkm
automatically matched to 1XKM B:1-25
region d:1-25
[122085]
Distinctin chain A [144315]
synthetic
[144316] (2)
1xkm
region c:1-22
[122084]
1xkm
region a:1-22
[122082]
Macrocyclic bacteriocins
[58278] (1)
macrocyclic antimicrobial peptide; bacteriocin
Macrocyclic bacteriocins
[58279] (2)
uperfamily
Microcin J25
[58280] (1)
Microcin J25 [58281]
Escherichia coli
[TaxId: 562]
[58282] (3)
SQ
Q9X2V7
38-58
1s7p
thermolysin digested peptide
chain a,b
[105357]
1q71
chain a
[96013]
1pp5
a lariat protoknot; different residue numbering from obsolete entries
chain a
[94972]
Subtilosin A
[111498] (1)
unusual posttranslational modifications linking cysteine sulfurs to alpha-carbons
Subtilosin A [111499]
Bacillus subtilis
[TaxId: 1423]
[111500] (1)
SQ
O07623
9-43
1pxq
chain a
[104382]
Peptide hormones
[58283] (1)
contains one alpha-helix
Peptide hormones
[58284] (1)
this is not a true superfamily
uperfamily
Peptide hormones
[58285] (27)
Pancreatic polypeptide [58286]
Cow (Bos taurus)
[TaxId: 9913]
[58287] (3)
1v1d
region a:1-31
[119817]
1ljv
chain a
[78056]
1bba
chain a
[46088]
Turkey (Meleagris gallopavo)
[TaxId: 9103]
[58288] (2)
SQ
P68249
2bf9
chain a
[116717]
1ppt
chain a
[46089]
Neuropeptide Y [58289]
Human (Homo sapiens)
[TaxId: 9606]
[58290] (2)
1ron
chain a
[46090]
1tz5
Chimera of pancreatic hormone and neuropeptide Y
region a:1-36
[119393]
Pig (Sus scrofa)
[TaxId: 9823]
[58291] (2)
1f8p
chain a
[46091]
1tz4
Chimera with human pancreatic hormone
region a:1-36
[119392]
Peptide YY, PYY [58292]
Pig (Sus scrofa)
[TaxId: 9823]
[58293] (6)
SQ
P68005
2rlk
automatically matched to d1qbfa_
region a:1-36
[152156]
1ruu
chain a
[105100]
1ru5
chain a
[105099]
2oon
automatically matched to d1qbfa_
region a:1-36
[148936]
2oop
automatically matched to d1qbfa_
region a:1-36
[148937]
1qbf
chain a
[46092]
Human (Homo sapiens)
[TaxId: 9606]
[144317] (2)
SQ
P10082
29-64! SQ
P10082
31-64
2df0
region a:1-34
[131443]
2dez
region a:1-36
[131442]
Neuropeptide Y analogues [58294]
Synthetic
[58295] (6)
1d1e
chain a
[46094]
1d1f
chain a
[46095]
1d0w
chain a
[46097]
1qfa
chain a
[46093]
1icy
chain a
[71192]
1fvn
chain a
[46096]
Neuropeptide F [75731]
Sheep tapeworm (Moniezia expansa)
[TaxId: 28841]
[75732] (1)
1k8v
chain a
[72182]
Deaminooxytocin [58296]
ten-residue peptide with one disulfide
Synthetic
[58297] (2)
1xy1
chain a
[46098]
chain b
[46099]
1xy2
chain a
[46100]
Glucagon [58298]
Pig (Sus scrofa)
[TaxId: 9823]
[58299] (3)
1gcn
chain a
[46101]
1nau
synthetic glucagon antagonist; (desHis1, desPhe6, Glu9)glucagon amide
chain a
[85499]
1kx6
structure in a lipid-water interphase
chain a
[68879]
Synthetic, Homo sapiens analog
[58300] (1)
1bh0
chain a
[46102]
Glucagon-like peptide-1-(7-36)-amide [82969]
Human (Homo sapiens)
[TaxId: 9606]
[82970] (1)
1d0r
chain a
[76137]
Exendin-4 [70005]
glucagone-like hormone
Synthetic
[70006] (1)
1jrj
chain a
[67135]
synthetic construct
[161289] (1)
3c59
automatically matched to d1jrja_
region b:9-35
[155936]
Homo sapiens
[TaxId: 9606]
[161290] (1)
3c5t
automatically matched to d1jrja_
region b:9-33
[155950]
Calcitonin [58301]
Eel (Anguilla japonica)
[TaxId: 7937]
[58302] (3)
1bku
chain a
[46104]
1bzb
chain a
[46103]
1byv
chain a
[46105]
Pink salmon (Oncorhynchus gorbuscha)
[TaxId: 8017]
[90268] (1)
1fb9
chain a
[83250]
Chum salmon (Oncorhynchus keta)
[TaxId: 8018]
[144318] (2)
SQ
P01263
83-114
2glg
region a:1-32
[135342]
2glh
region a:1-32
[135343]
Neuromedin B [58303]
Synthetic
[58304] (2)
1c98
chain a
[46107]
1c9a
chain a
[46106]
Hypocretin-2/orexin- b' [58305]
Human (Homo sapiens)
[TaxId: 9606]
[58306] (1)
1cq0
chain a
[46108]
Motilin [82971]
Synthetic, based on human sequence
[82972] (1)
1lbj
chain a
[77874]
Transportan (galanin-like peptide) [103708]
Synthetic
[103709] (1)
1smz
chain a
[98926]
Neurokinin B [111501]
Synthetic
[111502] (1)
SQ
Q9UHF0
81-90 # human TaxID: 9606
1p9f
chain a
[104090]
Orexin [111503]
Human (Homo sapiens)
[TaxId: 9606]
[111504] (2)
SQ
O43612
35-66 ! SQ
O43612
34-66
1r02
chain a
[104674]
1wso
chain a
[114865]
Pardaxin P-4 [111505]
Red sea moses sole (Pardachirus marmoratus)
[TaxId: 31087]
[111506] (1)
SQ
P81861
1xc0
chain a
[109542]
Gastric inhibitory polypeptide, GIP [118389]
Human (Homo sapiens)
[TaxId: 9606]
[118390] (1)
SQ
P09681
52-81
1t5q
chain a
[112257]
Pituitary adenylate cyclase-activating polypeptide, PACAP [161291]
Human (Homo sapiens)
[TaxId: 9606]
[161292] (1)
SQ
P18509
137-169
2jod
region b:6-38
[148156]
Angiotensin
[90269] (1)
Angiotensin
[90270] (1)
uperfamily
Angiotensin
[90271] (2)
Angiotensin I [90272]
Synthetic, based on human sequence
[90273] (1)
1n9u
chain a
[85471]
Angiotensin II [90274]
Synthetic, based on human sequence
[90275] (1)
1n9v
chain a
[85472]
delta toxin-like
[58307] (3)
single alpha helix
delta-Toxin
[58308] (1)
uperfamily
delta-Toxin
[58309] (1)
delta-Toxin [58310]
Synthetic
[58311] (2)
1dtc
chain a
[46109]
2dtb
chain a
[46110]
Antimicrobial peptide HP(2-20)
[90276] (1)
uperfamily
Antimicrobial peptide HP(2-20)
[90277] (1)
Antimicrobial peptide HP(2-20) [90278]
Synthetic, derived from the Helicobacter pylori ribosomal protein L1
[90279] (7)
SQ
P56029
2-20
1p0o
chain a
[87653]
1ot0
chain a
[104024]
1p0j
chain a
[87647]
1p0g
chain a
[87646]
1p0l
chain a
[87650]
1p5k
chain a
[87804]
1p5l
chain a
[87805]
Anticancer peptides
[118391] (1)
uperfamily
Anticancer peptides
[118392] (1)
Anticancer peptides [118393]
derived from Escherichia coli EIIA-Glc peptide (SQ
P69783
1-13) and Litoria raniformis aurein 1.2 (SQ
P82387
)
synthetic
[118394] (4)
1vm5
chain a
[113669]
1vm2
chain a
[113666]
1vm3
chain a
[113667]
1vm4
chain a
[113668]
PSP1-like
[58312] (1)
PSP1-like
[58313] (1)
uperfamily
PSP1-like
[58314] (8)
Plasmatocyte-spreading peptide PSP1 [58315]
Pseudoplusia includens
[TaxId: 76492]
[58316] (2)
1b1v
chain a
[46111]
1b5n
chain a
[46112]
Growth-blocking peptide GBP [58317]
Braconid wasp (Apanteles kariyai)
[TaxId: 7404]
[58318] (1)
parasite of armyworm (
Pseudaletia separata
?)
1bqf
chain a
[46113]
Cabbage moth (Mamestra brassicae)
[TaxId: 55057]
[161293] (1)
SQ
O96060
130-152
2dj9
region a:1-23
[146529]
Tobacco cutworm (Spodoptera litura)
[TaxId: 69820]
[161294] (1)
SQ
O96061
122-144
2djc
region a:1-23
[146531]
synthetic construct
[161295] (2)
2eqh
automatically matched to d1bqfa_
region a:1-23
[146985]
2eqq
automatically matched to d1bqfa_
region a:1-25
[146986]
Paralytic peptide [58319]
Insect (Manduca sexta)
[TaxId: 7130]
[58320] (1)
1hrl
chain a
[46114]
Silkworm (Bombyx mori)
[TaxId: 7091]
[82973] (1)
1irr
chain a
[76771]
Silkmoth (Antheraea yamamai)
[TaxId: 7121]
[118395] (1)
SQ
Q9UA40
108-130 # 95% sequence identity
1v28
chain a
[113492]
Arg-rich RNA binding peptides
[58321] (7)
30S ribosomal protein THX
[58322] (1)
uperfamily
30S ribosomal protein THX
[58323] (1)
30S ribosomal protein THX [58324]
Thermus thermophilus
[TaxId: 274]
[58325] (44)
SQ
P62612
2uub
automatically matched to 1YL4 X:2-25
complexed with 6mz, cm0, k, mg, par, zn
region u:2-25
[145756]
2vqe
automatically matched to 1YL4 X:2-25
complexed with k, mg, par, tm2, zn
region u:2-25
[153445]
1fjg
complexed with mg, par, scm, sry, zn
chain v
[46116]
2vqf
automatically matched to 1YL4 X:2-25
complexed with k, mg, par, tm2, zn
region u:2-25
[153464]
1j5e
complexed with unx, zn
chain v
[71564]
2uxc
automatically matched to 1YL4 X:2-25
complexed with k, mg, par, zn
region u:2-25
[145759]
1xmq
complexed with mg, par, t6a, zn
chain v
[115550]
2uua
automatically matched to 1YL4 X:2-25
complexed with 6mz, cm0, k, mg, par, zn
region u:2-25
[145755]
2uuc
automatically matched to 1YL4 X:2-25
complexed with 6mz, cm0, k, mg, par, zn
region u:2-25
[145757]
1n32
complexed with mg, par, psu, zn
chain v
[79890]
2uu9
automatically matched to 1YL4 X:2-25
complexed with 6mz, cm0, k, mg, par, zn
region u:2-25
[145754]
1xnq
complexed with mg, par, zn
chain v
[115624]
1xnr
complexed with mg, par, zn
chain v
[115646]
1hr0
complexed with mg, zn
chain v
[46117]
1hnz
complexed with hyg, mg, zn
chain v
[46118]
2j00
automatically matched to 1YL4 X:2-25
complexed with 5mu, mg, par, zn
region u:2-25
[145557]
2j02
automatically matched to 1YL4 X:2-25
complexed with 5mu, mg, par, zn
region u:2-25
[145583]
2uxd
automatically matched to 1YL4 X:2-25
complexed with k, mg, par, zn
region v:2-25
[152301]
1xmo
complexed with mg, mnu, par, t6a, zn
chain v
[115520]
1hnw
complexed with mg, tac, zn
chain v
[46119]
2e5l
automatically matched to 1YL4 X:2-25
complexed with zn
region v:2-25
[145110]
3d5a
automatically matched to 1YL4 X:2-25
complexed with mg, zn
region u:2-25
[157354]
3d5c
automatically matched to 1YL4 X:2-25
complexed with mg, zn
region u:2-25
[157384]
1i94
complexed with mg, wo2, zn
chain u
[62012]
1hnx
complexed with mg, pcy, zn
chain v
[46120]
1n33
complexed with mg, par, psu, zn
chain v
[79912]
2hhh
automatically matched to 1YL4 X:2-25
complexed with ksg
region u:2-25
[145392]
1i96
complexed with mg, wo2, zn
chain u
[62056]
2uxb
automatically matched to 1YL4 X:2-25
complexed with k, mg, par, zn
region u:2-25
[152282]
1n34
complexed with zn
chain v
[79934]
2v46
automatically matched to 1YL4 X:2-25
complexed with 5mu, mg, zn
region u:2-25
[152503]
2v48
automatically matched to 1YL4 X:2-25
complexed with 5mu, mg, zn
region u:2-25
[152539]
1i97
complexed with mg, tac, wo2, zn
chain u
[62079]
1n36
complexed with zn
chain v
[79957]
1i95
complexed with ede, mg, wo2, zn
chain u
[62034]
2qnh
automatically matched to 1YL4 X:2-25
complexed with 2mg, 5mc, 7mg, m2g, ma6, psu
region v:2-25
[150945]
2hgp
automatically matched to 1YL4 X:2-25
region x:2-25
[145328]
2hgi
automatically matched to 1YL4 X:2-25
region x:2-25
[145296]
2hgr
automatically matched to 1YL4 X:2-25
region x:2-25
[145360]
2ow8
automatically matched to 1YL4 X:2-25
complexed with 2mg, 4oc, 4su, 5mc, 5mu, 7mg, h2u, m2g, ma6, mia, psu, ur3
region v:2-25
[145737]
1yl4
region x:2-25
[144699]
2b64
automatically matched to 1YL4 X:2-25
complexed with psu, yyg
region u:2-25
[144954]
2b9o
automatically matched to 1YL4 X:2-25
complexed with psu, yyg
region u:2-25
[144976]
2b9m
automatically matched to 1YL4 X:2-25
complexed with psu, yyg
region u:2-25
[144967]
HIV-1 REV fragments
[58326] (1)
uperfamily
HIV-1 REV fragments
[58327] (1)
HIV-1 REV fragments [58328]
Human immunodeficiency virus type 1
[TaxId: 11676]
[58329] (6)
1etg
residues 33-55
chain b
[46123]
1etf
residues 33-55
chain b
[46124]
484d
residues 34-50; bound to RNA
chain a
[46122]
1rpv
residues 34-50
chain a
[46121]
1ull
residues 34-50; bound to RNA
chain b
[46125]
1i9f
bound to RNA
chain b
[62089]
RSG-1.2 peptide
[58330] (1)
uperfamily
RSG-1.2 peptide
[58331] (1)
RSG-1.2 peptide [58332]
Human immunodeficiency virus type 1
[TaxId: 11676]
[58333] (1)
1g70
chain b
[90353]
TAT peptides
[58334] (1)
uperfamily
TAT peptides
[58335] (2)
TAT peptides [58336]
Human immunodeficiency virus type 1
[TaxId: 11676]
[58337] (1)
1jfw
chain a
[62942]
Bovine immunodeficiency virus
[TaxId: 11657]
[58338] (2)
1mnb
residues 68-81; bound to TAR RNA
chain a
[46128]
1biv
residues 65-81; bound to TAR RNA
chain b
[46129]
Box B RNA-binding N peptide
[58339] (1)
uperfamily
Box B RNA-binding N peptide
[58340] (4)
Box B RNA-binding N peptide [58341]
Salmonella bacteriophage P22
[TaxId: 10754]
[58342] (1)
1a4t
chain b
[46130]
Bacteriophage lambda
[TaxId: 10710]
[58343] (1)
1qfq
chain b
[46131]
Bacteriophage HK022
[TaxId: 10742]
[70007] (1)
1hji
chain b
[65847]
Bacteriophage phi-21
[TaxId: 10737]
[90280] (1)
1nyb
chain a
[86402]
HTLV-1 peptide
[58344] (1)
uperfamily
HTLV-1 peptide
[58345] (1)
HTLV-1 peptide [58346]
bound to its RNA aptamer target
Synthetic
[58347] (1)
1exy
chain b
[46132]
Ilarvirus coat protein N-terminal fragment
[118396] (1)
uperfamily
Ilarvirus coat protein N-terminal fragment
[118397] (1)
N-terminal part of
Pfam 01787
; RNA-binding helix
Ilarvirus coat protein N-terminal fragment [118398]
Alfalfa mosaic virus (strain YSMV)
[TaxId: 12325]
[118399] (1)
SQ
P24264
1-26
1xok
chain c
[115702]
chain d
[115703]
DNA-binding domains of HMG-I(Y)
[58348] (1)
DNA-binding domains of HMG-I(Y)
[58349] (1)
uperfamily
DNA-binding domains of HMG-I(Y)
[58350] (1)
DNA-binding domains of HMG-I(Y) [58351]
Human (Homo sapiens)
[TaxId: 9606]
[58352] (4)
2ezg
third domain
chain a
[46134]
2eze
second domain
chain a
[46133]
2ezf
third domain
chain a
[46136]
2ezd
second domain
chain a
[46135]
VPR protein fragments
[58353] (1)
VPR protein fragments
[58354] (1)
uperfamily
VPR protein fragments
[58355] (1)
VPR protein fragments [58356]
Human immunodeficiency virus type 1
[TaxId: 11676]
[58357] (13)
1kzt
residues 34-51
chain a
[73379]
1kzv
residues 34-51
chain a
[73380]
1kzs
residues 34-51
chain a
[73378]
1fi0
residues 13-33; in micelles
chain a
[46140]
1m8l
residues 1-96; globular structure: an open 3-helical bundle
chain a
[84879]
1esx
residues 1-96; non-globular structure
chain a
[59501]
1vpc
residues 52-96
chain a
[46138]
1ceu
residues 1-51
chain a
[46137]
1dsk
residues 59-86
chain a
[46141]
1bde
residues 50-82
chain a
[46142]
1dsj
residues 50-75
chain a
[46139]
1x9v
region a:52-96
[121827]
1x9v
automatically matched to 1X9V A:52-96
region b:52-96
[121828]
Inactivation gate of potassium and sodium channels
[58358] (1)
Inactivation gate of potassium and sodium channels
[58359] (1)
uperfamily
Inactivation gate of potassium and sodium channels
[58360] (5)
it is not a true family
Potassium channel RAW3 [58361]
Synthetic, based on mammalian sequence
[58362] (1)
1ztn
chain a
[46143]
Synthetic, expressed in Escherichia coli
[58363] (2)
1b4g
chain a
[46144]
1b4i
chain a
[46145]
Potassium channel RCK4 [58364]
Synthetic, based on mammalian sequence
[58365] (2)
1zto
chain a
[46146]
1kn7
tandem inactivation domain (residues 1-75)
chain a
[84413]
Sodium channel IIA [58366]
Rat (Rattus norvegicus)
[TaxId: 10116]
[58367] (1)
1byy
chain a
[46147]
Potassium voltage-gated channel subfamily H (HERG) extracellular linker [103710]
Synthetic, based on human sequence
[103711] (1)
1ujl
chain a
[99459]
Coagulation factor VIII, membrane-binding peptide
[58368] (1)
Coagulation factor VIII, membrane-binding peptide
[58369] (1)
uperfamily
Coagulation factor VIII, membrane-binding peptide
[58370] (1)
Coagulation factor VIII, membrane-binding peptide [58371]
Human (Homo sapiens)
[TaxId: 9606]
[58372] (2)
1cfg
CASP1
chain a
[46149]
1fac
chain a
[46148]
Phosphocholine cytidylyltransferase membrane-binding peptides
[58373] (1)
Phosphocholine cytidylyltransferase membrane-binding peptides
[58374] (1)
uperfamily
Phosphocholine cytidylyltransferase membrane-binding peptides
[58375] (1)
Phosphocholine cytidylyltransferase membrane-binding peptides [58376]
alpha-helix
Rat (Rattus norvegicus)
[TaxId: 10116]
[58377] (2)
1peh
residues 236-268
chain a
[46151]
1pei
residues 267-288
chain a
[46150]
Parathyroid hormone fragments (residues between 1 and 39)
[58378] (1)
Parathyroid hormone fragments (residues between 1 and 39)
[58379] (1)
uperfamily
Parathyroid hormone fragments (residues between 1 and 39)
[58380] (3)
Parathyroid hormone fragments (residues between 1 and 39) [58381]
Human (Homo sapiens)
[TaxId: 9606]
[58382] (14)
1et1
chain a
[46152]
chain b
[46153]
1bl1
chain a
[46154]
1fvy
chain a
[46157]
1hpy
chain a
[46161]
1bwx
chain a
[46155]
1hph
chain a
[46159]
1zwg
chain a
[46158]
1zwb
chain a
[46165]
1zwa
chain a
[46162]
1zwe
chain a
[46160]
1zwf
chain a
[46156]
1zwd
chain a
[46164]
1hth
chain a
[46163]
1bzg
chain a
[46166]
Cow (Bos taurus)
[TaxId: 9913]
[58383] (1)
1zwc
chain a
[46167]
synthetic construct
[161296] (2)
3c4m
automatically matched to d1bwxa_
region c:15-34
[155932]
3c4m
automatically matched to d1bwxa_
region d:15-34
[155933]
Corticotropin releasing hormone
[58384] (1)
Corticotropin releasing hormone
[58385] (1)
uperfamily
Corticotropin releasing hormone
[58386] (3)
Corticotropin releasing hormone [58387]
Human (Homo sapiens)
[TaxId: 9606]
[58388] (2)
1go9
chain a
[65411]
1goe
chain a
[65412]
synthetic construct
[161297] (2)
2rme
automatically matched to d1go9a_
region a:1-38
[152163]
2rmd
automatically matched to d1go9a_
region a:1-33
[152162]
Ovis aries
[TaxId: 9940]
[161298] (2)
2rmi
automatically matched to d1go9a_
region a:12-41
[152165]
2rmf
automatically matched to d1go9a_
region a:2-41
[152164]
Liposaccharide-binding protein CAP18 (residues 106-137)
[58389] (1)
Liposaccharide-binding protein CAP18 (residues 106-137)
[58390] (1)
uperfamily
Liposaccharide-binding protein CAP18 (residues 106-137)
[58391] (1)
Liposaccharide-binding protein CAP18 (residues 106-137) [58392]
Synthetic, based on rabbit sequence
[58393] (1)
1lyp
chain a
[46169]
Polymorphic antigen SPAM-H1 (residues 90-127)
[58394] (1)
Polymorphic antigen SPAM-H1 (residues 90-127)
[58395] (1)
uperfamily
Polymorphic antigen SPAM-H1 (residues 90-127)
[58396] (1)
Polymorphic antigen SPAM-H1 (residues 90-127) [58397]
Malaria parasite (Plasmodium falciparum)
[TaxId: 5833]
[58398] (1)
1psm
chain a
[46170]
Insect toxins
[58399] (1)
Insect toxins
[58400] (2)
uperfamily
Mellitin-like toxins
[58401] (2)
Mellitin [58402]
Honeybee (Apis mellifera)
[TaxId: 7460]
[58403] (2)
2mlt
chain a
[46171]
chain b
[46172]
1bh1
D-Pro14 synthetic variant
chain a
[46173]
Mastoparan [64623]
Wasp (Vespula lewisii)
[TaxId: 7452]
[64624] (1)
1d7n
chain a
[59110]
Poneratoxin (Pac-Tx)
[103712] (1)
Poneratoxin (Pac-Tx) [103713]
Ant (Paraponera clavata)
[TaxId: 55425]
[103714] (1)
1g92
chain a
[90508]
Tertiapin
[58404] (1)
small disulfide-rich peptide
Tertiapin
[58405] (1)
uperfamily
Tertiapin
[58406] (1)
Tertiapin [58407]
Honeybee venom (Apis mellifera)
[TaxId: 7460]
[58408] (1)
1ter
chain a
[46174]
Antifreeze polypeptide HPLC-6
[58409] (1)
Antifreeze polypeptide HPLC-6
[58410] (1)
uperfamily
Antifreeze polypeptide HPLC-6
[58411] (1)
Antifreeze polypeptide HPLC-6 [58412]
Winter flounder (Pseudopleuronectes americanus)
[TaxId: 8265]
[58413] (3)
1wfb
chain a
[46175]
chain b
[46176]
1wfa
Synthetic hydrophobic analogue
chain a
[46177]
chain b
[46178]
1j5b
Synthetic hydrophobic analogue
chain a
[71540]
Troponin I fragments
[58414] (1)
Troponin I fragments
[58415] (1)
uperfamily
Troponin I fragments
[58416] (3)
Troponin I fragments [58417]
Rabbit (Oryctolagus cuniculus)
[TaxId: 9986]
[58418] (1)
1a2x
residues 1-47
complexed with ca
chain b
[46179]
Human (Homo sapiens), cardiac isoform
[TaxId: 9606]
[58419] (2)
1mxl
residues 147-163
complexed with ca
chain i
[46180]
1lxf
residues 147-163
complexed with bep, ca
chain i
[78293]
Chicken (Gallus gallus)
[TaxId: 9031]
[144319] (2)
SQ
P68246
132-183
1vdi
region a:131-182
[119992]
1vdj
automatically matched to 1VDI A:131-182
region a:131-182
[119993]
Pilin fragments
[58420] (1)
Pilin fragments
[58421] (1)
uperfamily
Pilin fragments
[58422] (3)
Pilin, fragment 128-144 [58423]
Pseudomonas aeruginosa, strain k pak pilin
[TaxId: 287]
[58424] (4)
1nim
chain a
[46181]
1paj
chain a
[46183]
1pak
chain a
[46182]
1nil
chain a
[46184]
Pseudomonas aeruginosa, strain o pao pilin
[TaxId: 287]
[58425] (2)
1pao
chain a
[46185]
1pan
chain a
[46186]
Pseudomonas aeruginosa, strain kb7
[TaxId: 287]
[58426] (2)
1kb8
chain a
[46188]
1kb7
chain a
[46187]
RP71935
[58427] (1)
RP71935
[58428] (1)
uperfamily
RP71935
[58429] (1)
RP71935 [58430]
21-residue disulfide-bound peptide
Actinomycete, strain sp9440
[TaxId: 100235]
[58431] (2)
1rpc
chain a
[46189]
1rpb
chain a
[46190]
Atrial natriuretic peptide
[58432] (1)
Atrial natriuretic peptide
[58433] (1)
uperfamily
Atrial natriuretic peptide
[58434] (1)
Atrial natriuretic peptide [58435]
A-type receptor specific hypotensive hormone
Human (Homo sapiens)
[TaxId: 9606]
[58436] (1)
1anp
CA-atoms only, mutant protein sequence
chain a
[46191]
Compstatin
[58437] (1)
Compstatin
[58438] (1)
uperfamily
Compstatin
[58439] (1)
Compstatin [58440]
Synthetic chemical synthesis
[58441] (1)
1a1p
chain a
[46192]
Membrane-bound antimicrobial peptides
[58442] (1)
Membrane-bound antimicrobial peptides
[58443] (1)
uperfamily
Membrane-bound antimicrobial peptides
[58444] (2)
no or little secondary structure
Tritrpticin [58445]
Synthetic, based on Sus scrofa sequence
[58446] (1)
1d6x
chain a
[46193]
Indolicidin [58447]
Synthetic, based on Bos taurus sequence
[58448] (5)
1hr1
chain a
[46195]
1g89
chain a
[46196]
1qx9
chain a
[96517]
1qxq
chain a
[96551]
1g8c
chain a
[46194]
Endothelin-like
[58449] (1)
small disulfide-rich
Endothelin-like
[58450] (1)
uperfamily
Endothelin-like
[58451] (3)
Endothelin-1 [58452]
Human (Homo sapiens)
[TaxId: 9606]
[58453] (4)
SQ
P05305
51-68
1t7h
chain a
[112298]
chain b
[112299]
1edn
chain a
[46197]
1edp
chain a
[46198]
1v6r
chain a
[100423]
Synthetic
[58454] (2)
6cmh
linear modified endothelin-1 agonist
chain a
[46200]
3cmh
linear truncated endothelin-1 agonist
chain a
[46199]
Sarafotoxin S6B [58455]
Synthetic, based on sequence from asp Atractaspis engaddensis venom
[58456] (1)
1srb
chain a
[46201]
Heat-stable enterotoxin (HSE)
[58457] (1)
Heat-stable enterotoxin (HSE)
[58458] (1)
uperfamily
Heat-stable enterotoxin (HSE)
[58459] (2)
short disulfide-bound peptide
Heat-stable enterotoxin [58460]
Escherichia coli
[TaxId: 562]
[58461] (3)
1etm
chain a
[46204]
1etl
chain a
[46203]
1etn
chain a
[46202]
Guanylin [58462]
endogenous ligand to the HSE receptor
Human (Homo sapiens)
[TaxId: 9606]
[58463] (4)
1gna
chain a
[46205]
1gnb
chain a
[46206]
1uya
uroguanylin-16
chain a
[46207]
1uyb
uroguanylin-16
chain a
[46208]
Conotoxins
[58464] (1)
disulfide-rich fold
Conotoxins
[58465] (7)
all apart omega class; it is not a true superfamily
uperfamily
mu-conotoxin
[58466] (4)
mu-Conotoxin GIIIa [58467]
Conus geographus
[TaxId: 6491]
[58468] (4)
1tck
chain a
[46209]
1tch
chain a
[46210]
1tcj
chain a
[46212]
1tcg
chain a
[46211]
mu-Conotoxin GIIIb [58469]
Conus geographus
[TaxId: 6491]
[58470] (1)
1gib
chain a
[46213]
Mu-conotoxin pIIIa [103715]
Conus purpurascens
[TaxId: 41690]
[103716] (1)
1r9i
chain a
[97261]
Mu-conotoxin smIIIa [103717]
Conus stercusmuscarum
[TaxId: 89452]
[103718] (1)
1q2j
chain a
[95629]
alpha-conotoxin
[58471] (11)
13-16 residue peptide with 2 disulfides
alpha-conotoxin PNI1 [58472]
Conus pennaceus
[TaxId: 37335]
[58473] (1)
1pen
chain a
[46214]
alpha-conotoxin PNIB [58474]
Conus pennaceus
[TaxId: 37335]
[58475] (1)
1akg
chain a
[46215]
alpha-conotoxin IM1 [58476]
Conus imperialis
[TaxId: 35631]
[58477] (5)
1g2g
chain a
[46216]
1cnl
chain a
[46219]
1e76
chain a
[46217]
1e74
chain a
[46218]
1e75
chain a
[46220]
alpha-conotoxin MII [58478]
Synthetic
[58479] (1)
1mii
chain a
[46221]
G1 alpha-conotoxin [58480]
Conus geographus
[TaxId: 6491]
[58481] (5)
1not
chain a
[46222]
1qs3
Synthetic antitoxic analog
chain a
[46223]
1xgc
chain a
[74643]
1xgb
chain a
[74642]
1xga
chain a
[74641]
alpha-conotoxin GID [82974]
Conus geographus
[TaxId: 6491]
[82975] (1)
1mtq
chain a
[79466]
alpha-conotoxin CNIA [58482]
Conus consors
[TaxId: 101297]
[58483] (1)
1b45
chain a
[46224]
alpha-conotoxin auIB [58484]
Conus aulicus
[TaxId: 89437]
[58485] (3)
1mxp
disulfide bond isomer
chain a
[79669]
1dg2
chain a
[46225]
1mxn
chain a
[79668]
alpha-conotoxin SI [58486]
Conus striatus
[TaxId: 6493]
[58487] (2)
1hje
chain a
[83486]
1qmw
chain a
[46226]
Alpha-conotoxin EI [103719]
Conus ermineus
[TaxId: 55423]
[103720] (1)
1k64
chain a
[90940]
Alpha-conotoxin GIC [111507]
Conus geographus
[TaxId: 6491]
[111508] (1)
SQ
Q86RB2
21-36
1ul2
chain a
[107920]
Alpha-a-conotoxin
[58488] (2)
AA-conotoxin pIVa [58489]
Conus purpurascens
[TaxId: 41690]
[58490] (1)
1p1p
chain a
[46227]
Alpha-a-conotoxin eIVa [103721]
Conus ermineus
[TaxId: 55423]
[103722] (1)
1pqr
chain a
[95027]
psi-conotoxin
[58491] (2)
psi-conotoxin pIIIe [58492]
Conus purpurascens
[TaxId: 41690]
[58493] (2)
1jlo
chain a
[84175]
1as5
chain a
[46228]
psi-conotoxin pIIIf [90281]
Conus purpurascens
[TaxId: 41690]
[90282] (1)
1jlp
chain a
[84176]
Conotoxin tiA
[75733] (1)
Conotoxin tiA [75734]
Conus tulipa
[TaxId: 6495]
[75735] (1)
1ien
chain a
[71201]
Conotoxin mrIB
[75736] (1)
Conotoxin mrIB [75737]
Conus marmoreus
[TaxId: 42752]
[75738] (1)
1ieo
chain a
[71202]
Delta-conotoxin
[103723] (1)
delta-conotoxin eVIa1 [103724]
Conus ermineus
[TaxId: 55423]
[103725] (1)
1sbu
chain a
[98795]
Conantokin
[58494] (1)
Conantokin
[58495] (2)
gamma-carboxyglutamic acid (GLA)-rich peptide; active conformation may be stabilized by metal ions
uperfamily
Conantokin G (conatoxin G)
[58496] (1)
Conantokin G (conatoxin G) [58497]
Conus geographus
[TaxId: 6491]
[58498] (3)
1ad7
metal-free
chain a
[46229]
1onu
chain a
[46230]
1awy
chain a
[46231]
Conantokin-T
[58499] (1)
Conantokin-T [58500]
Conus tulipa
[TaxId: 6495]
[58501] (1)
1ont
chain a
[46232]
Contryphan-R
[58502] (1)
Contryphan-R
[58503] (1)
uperfamily
Contryphan-R
[58504] (1)
Contryphan-R [58505]
contains D-tryptophan
Conus radiatus
[TaxId: 61198]
[58506] (6)
1qfb
chain a
[46233]
1dfy
an engineered contryphan cyclic peptide
chain a
[70081]
1dfz
an engineered contryphan cyclic peptide
chain a
[70082]
1dg0
chain a
[90441]
1nxn
contryphan-vn cis conformer
chain a
[86387]
1d7t
an engineered contryphan cyclic peptide (motif cpxxpxc)
chain a
[46234]
Kappa-hefutoxin-like
[58507] (2)
hairpin of two short helices crosslinked with two disulfides
Immunodominant region of protein G of BRSV
[58508] (1)
uperfamily
Immunodominant region of protein G of BRSV
[58509] (2)
Immunodominant region of protein G of BRSV [58510]
Bovine respiratory syncytial virus
[TaxId: 11246]
[58511] (1)
1brv
chain a
[46235]
Human respiratory syncytial virus
[TaxId: 11250]
[90283] (2)
1kwe
chain a
[84474]
1kwd
chain a
[84473]
Potassium channel toxins
[75739] (1)
uperfamily
Potassium channel toxins
[75740] (1)
Kappa-hefutoxin [75741]
Synthetic
[75742] (1)
1hp9
chain a
[70978]
Penaeidin-3a
[103726] (1)
Penaeidin-3a
[103727] (1)
uperfamily
Penaeidin-3a
[103728] (1)
Penaeidin-3a [103729]
antimicrobial peptide; consists of N-terminal proline-rich tail and C-terminal cysteine-rich domain
Pacific white shrimp (Litopenaeus vannamei)
[TaxId: 6689]
[103730] (1)
1ueo
chain a
[99269]
Bradykinin
[58512] (1)
Bradykinin
[58513] (1)
uperfamily
Bradykinin
[58514] (2)
Bradykinin [64625]
SP Human (Homo sapiens)
[TaxId: 9606]
[64626] (1)
1jjq
bradykinin-penta-O-galloyl-D-glucopyranose complex
chain a
[63138]
Bradykinin antagonist B-9340 [58515]
Synthetic
[58516] (1)
1bdk
chain a
[46236]
Transmembrane helical fragments
[58517] (1)
Transmembrane helical fragments
[58518] (1)
uperfamily
Transmembrane helical fragments
[58519] (32)
the member of this family may be not related
Bacteriorhodopsin fragments [58520]
Archaeon Halobacterium halobium
[TaxId: 2242]
[58521] (3)
1bha
chain a
[46238]
1bhb
chain a
[46239]
1bct
chain a
[46237]
Rhodopsin fragments [58522]
Synthetic, based on Bos taurus sequence
[58523] (6)
1nzs
phosphorylated carboxy terminus (19 residues)
chain a
[92387]
1eds
intradiskal loop 1
chain a
[46240]
1edw
third intradiskal loop
chain a
[46241]
1edv
2nd intradiskal loop
chain a
[46242]
1edx
amino terminus (residues 1-40)
chain a
[46243]
1fdf
helix 7
chain a
[46244]
Band 3 [58524]
Synthetic peptides based on human band 3 sequence
[58525] (9)
1bnx
chain a
[46247]
1bts
chain a
[46246]
1btt
chain a
[46245]
1btr
chain a
[46249]
1btq
chain a
[46248]
1bzk
chain a
[46250]
1bh7
chain a
[46252]
2btb
chain a
[46253]
2bta
chain a
[46251]
Pulmonary surfactant-associated polypeptide C (SP-C) [58526]
Pig (Sus scrofa)
[TaxId: 9823]
[58527] (1)
1spf
chain a
[46254]
Surfactant Protein B (SP-B) miniprotein constructs [58528]
Synthetic, based on Homo sapiens sequence
[58529] (7)
SQ
P07988
208-225,263-278
1kmr
chain a
[72755]
1rg4
chain a
[104925]
2dwf
automatically matched to 2JOU A:1-34
region a:1-34
[146598]
1rg3
chain a
[104924]
2jou
region a:1-34
[148161]
1dfw
chain a
[46255]
1ssz
mini-B: an N-terminal/C-terminal construct
chain a
[105999]
beta-Adrenoreceptor [58530]
Turkey (Meleagris gallopavo)
[TaxId: 9103]
[58531] (1)
1dep
chain a
[46256]
Dimeric transmembrane domain of glycophorin A [58532]
right-hand twisted coiled coil
Human (Homo sapiens)
[TaxId: 9606]
[58533] (1)
1afo
chain a
[46257]
chain b
[46258]
F1F0 ATP synthase subunit C fragments [58534]
Escherichia coli
[TaxId: 562]
[58535] (1)
1aty
residues 9-26, 52-79
chain a
[46259]
Membrane domain of the subunit b of ATP synthase [58536]
Escherichia coli
[TaxId: 562]
[58537] (1)
1b9u
chain a
[46260]
alpha-subunit of nicotinic acetylcholine receptor [58538]
M3 transmembrane segment
Synthetic, based on Torpedo californica sequence
[58539] (1)
3mra
chain a
[46261]
Membrane spanning segment 2 (M2) of the acetylcholine receptor [58540]
Rat (Rattus norvegicus)
[TaxId: 10116]
[58541] (2)
1cek
chain a
[46263]
1a11
chain a
[46262]
Pacific electric ray (Torpedo californica)
[TaxId: 7787]
[58542] (2)
1dxz
chain a
[46269]
1eq8
chain a
[46264]
chain b
[46265]
chain c
[46266]
chain d
[46267]
chain e
[46268]
Transmembrane segment 2 of NMDA receptor NR1 [58543]
Human (Homo sapiens)
[TaxId: 9606]
[58544] (1)
2nr1
chain a
[46270]
Cystic fibrosis transmembrane conductance regulator [58545]
Synthetic
[58546] (4)
1ckx
chain a
[46272]
1ckw
chain a
[46271]
1ckz
chain a
[46274]
1cky
chain a
[46273]
Second repeat (is2mic) from voltage-gated sodium channel [58547]
Synthetic, based on Rattus norvegicus sequence
[58548] (1)
1qg9
chain a
[46275]
Cytoplasmic domain of p23 [58549]
Synthetic, based on Oryctolagus cuniculus sequence
[58550] (2)
1p23
chain a
[46276]
chain b
[46277]
chain c
[46278]
chain d
[46279]
1m23
chain a
[46280]
Active domain of protein icp47 [58551]
Herpes simplex virus type 1, strain 17
[TaxId: 10298]
[58552] (1)
1qlo
chain a
[46281]
fragment of hepatitis C envelope glycoprotein E (residues 350-370) [58553]
Synthetic
[58554] (1)
1emz
chain a
[46282]
Neu/erbb-2 membrane spanning segment [64627]
Synthetic, based on Rattus norvegicus sequence
[64628] (1)
1iij
chain a
[62432]
Membrane binding peptide of semliki forest virus mRNA capping enzyme nsp1 [64629]
Synthetic
[64630] (1)
1fw5
chain a
[60057]
Sarcolipin [70008]
Synthetic
[70009] (1)
1jdm
chain a
[66558]
Potassium channel fragment L45 [75743]
Fruit fly (Drosophila melanogaster)
[TaxId: 7227]
[75744] (2)
1ho2
chain a
[70967]
1ho7
chain a
[70972]
Amphipathic domain of YopD [75745]
Synthetic, Yersinia pestis-based
[75746] (1)
1kdl
chain a
[72352]
Matrix protein M2 transmembrane peptide [82976]
Synthetic, Inluenza A virus-based
[82977] (2)
1nyj
the closed state structure by solid state NMR spectroscopy
chain a
[86404]
chain b
[86405]
chain c
[86406]
chain d
[86407]
1mp6
chain a
[79382]
Influenza A virus
[TaxId: 11320]
[161299] (1)
2rlf
automatically matched to d1mp6a_
region a:23-46
[152155]
synthetic construct
[161300] (8)
3bkd
automatically matched to d1mp6a_
region a:22-46
[155345]
3bkd
automatically matched to d1mp6a_
region b:22-46
[155346]
3bkd
automatically matched to d1mp6a_
region c:22-46
[155347]
3bkd
automatically matched to d1mp6a_
region d:22-46
[155348]
3bkd
automatically matched to d1mp6a_
region e:22-46
[155349]
3bkd
automatically matched to d1mp6a_
region f:22-46
[155350]
3bkd
automatically matched to d1mp6a_
region g:22-46
[155351]
3bkd
automatically matched to d1mp6a_
region h:22-46
[155352]
N-terminal membrane anchor of the glucose-specific IIa component [90284]
Escherichia coli
[TaxId: 562]
[90285] (1)
amphipathic helix; this region is partly disordered in the crystal structure of the whole protein
(
d1gl
)
a CH F
1o53
chain a
[92481]
Pheromone alpha factor receptor [103731]
Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]
[103732] (1)
1pjd
6th transmembrane helix
chain a
[94759]
Glycine receptor alpha-1 chain [103733]
Human (Homo sapiens)
[TaxId: 9606]
[103734] (2)
SQ
P23415
281-337
1vry
region a:1-57
[120488]
1mot
2nd transmembrane helix
chain a
[91371]
Vpu protein [103735]
Human immunodeficiency virus type 1, HIV-1
[TaxId: 11676]
[103736] (3)
1pi7
chain a
[94704]
1pi8
chain a
[94705]
1pje
chain a
[94760]
Membrane anchor domain of the nonstructural protein 5a (NS5a) [111509]
Hepatitis C virus, HCV
[TaxId: 11103]
[111510] (5)
SQ
P27958
1972-2003
1r7g
chain a
[104835]
1r7c
chain a
[104831]
1r7d
chain a
[104832]
1r7e
chain a
[104833]
1r7f
chain a
[104834]
ASLV fusion peptide [118400]
Rous sarcoma virus
[TaxId: 11886]
[118401] (1)
SQ
P03397
418-445
1xnl
chain a
[115602]
Topogenic peptides
[58555] (4)
Ferredoxin chloroplastic transit peptide
[58556] (1)
uperfamily
Ferredoxin chloroplastic transit peptide
[58557] (1)
Ferredoxin chloroplastic transit peptide [58558]
Unicellular eukaryote green alga (Chlamydomonas reinhardtii)
[TaxId: 3055]
[58559] (1)
1fct
chain a
[46283]
Vacuolar targeting peptide from NA-PROPI (residues 29-54)
[58560] (1)
uperfamily
Vacuolar targeting peptide from NA-PROPI (residues 29-54)
[58561] (1)
Vacuolar targeting peptide from NA-PROPI (residues 29-54) [58562]
Winged tobacco (Nicotiana alata)
[TaxId: 4087]
[58563] (1)
1vtp
chain a
[46284]
Microcin leader peptide
[58564] (1)
uperfamily
Microcin leader peptide
[58565] (1)
Microcin leader peptide [58566]
Escherichia coli
[TaxId: 562]
[58567] (1)
2mlp
chain a
[46285]
ATP synthase beta chain, mitochondrial prepeptide
[103737] (1)
uperfamily
ATP synthase beta chain, mitochondrial prepeptide
[103738] (1)
ATP synthase beta chain, mitochondrial prepeptide [103739]
Leadwort-leaved tobacco (Nicotiana plumbaginifolia)
[TaxId: 4092]
[103740] (1)
1pyv
chain a
[95376]
Phospholamban fragments
[58568] (1)
Phospholamban fragments
[58569] (1)
uperfamily
Phospholamban fragments
[58570] (3)
Phospholamban fragments [58571]
Human (Homo sapiens)
[TaxId: 9606]
[58572] (1)
1plp
cytoplasmic domain residues 1-25
chain a
[46286]
Pig (Sus scrofa)
[TaxId: 9823]
[58573] (2)
1fjp
chain a
[46287]
1fjk
chain a
[46288]
Rabbit (Oryctolagus cuniculus)
[TaxId: 9986]
[103741] (1)
1n7l
chain a
[91698]
Influenza hemagglutinin fragments
[64631] (1)
Influenza hemagglutinin fragments
[64632] (1)
uperfamily
Influenza hemagglutinin fragments
[64633] (2)
Influenza hemagglutinin fragments [64634]
Synthetic
[64635] (5)
1xop
region a:1-20
[122205]
1ibn
chain a
[62227]
1xoo
region a:1-20
[122204]
1ibo
chain a
[62228]
2dci
region a:1-20
[131373]
Influenza B virus
[TaxId: 11520]
[161301] (1)
2rft
automatically matched to d1xooa1
region b:3-20
[152001]
Fragments of bowman-birk inhibitor
[58574] (1)
Fragments of bowman-birk inhibitor
[58575] (1)
uperfamily
Fragments of bowman-birk inhibitor
[58576] (1)
Fragments of bowman-birk inhibitor [58577]
Synthetic
[58578] (3)
1smf
peptide based on mimic mung bean trypsin inhibitor
complexed with ca
chain i
[46289]
1gm2
the antitryptic reactive site loop
chain a
[76231]
1hd9
reactive site loop sequence
chain a
[60963]
Fragments of apolipoproteins
[58579] (1)
Fragments of apolipoproteins
[58580] (1)
uperfamily
Fragments of apolipoproteins
[58581] (10)
Fragments of apolipoproteins [58582]
Human (Homo sapiens), synthetic, C-I residues 7-24
[58583] (1)
1ale
chain a
[46290]
Human (Homo sapiens), synthetic, C-I residues 35-53
[58584] (1)
1alf
chain a
[46291]
Human (Homo sapiens), synthetic, C-I residues 1-38
[58585] (1)
1opp
chain a
[46292]
Human (Homo sapiens), synthetic, C-I 57 residues
[58586] (1)
1ioj
chain a
[46293]
Human (Homo sapiens), synthetic, A-I residues 166-185
[58587] (3)
1odp
chain a
[46295]
1odq
chain a
[46294]
1odr
chain a
[46296]
Human (Homo sapiens), synthetic, A-I residues 142-187
[58588] (2)
1gw3
chain a
[46298]
1gw4
chain a
[46297]
Human (Homo sapiens), synthetic, E residues 263-286
[58589] (1)
1oef
chain a
[46299]
Human (Homo sapiens), synthetic, E residues 267-289
[58590] (1)
1oeg
chain a
[46300]
Human (Homo sapiens), synthetic, C-II
[58591] (4)
SQ
P02655
23-101
1o8t
residues 1-79
chain a
[86679]
1i5j
residues 13-79
chain a
[61788]
1soh
structure in dodecyl phosphocholine
chain a
[105845]
1by6
residues 44-79
chain a
[46301]
Baboons (Papio sp.), synthetic, APO-C1
[58592] (1)
1eze
chain a
[46302]
Transactivation protein TAT
[58593] (1)
Transactivation protein TAT
[58594] (1)
uperfamily
Transactivation protein TAT
[58595] (2)
Transactivation protein TAT [58596]
Equine infectious anemia virus, EIAV
[TaxId: 11665]
[58597] (2)
1tvt
chain a
[46304]
1tvs
chain a
[46303]
Human immunodeficiency virus type 1
[TaxId: 11676]
[58598] (4)
1k5k
chain a
[72077]
1tbc
chain a
[46305]
1tac
chain a
[46306]
1tiv
chain a
[46307]
Proline pipe
[58599] (1)
Proline pipe
[58600] (1)
uperfamily
Proline pipe
[58601] (1)
Tus proline repeat domain (residues 223-244) [58602]
Escherichia coli
[TaxId: 562]
[58603] (1)
1sut
chain a
[46308]
Amyloid peptides
[58604] (1)
Amyloid peptides
[58605] (1)
uperfamily
Amyloid peptides
[58606] (5)
Alzheimer's disease amyloid beta-peptide [58607]
Human (Homo sapiens)
[TaxId: 9606]
[58608] (14)
SQ
P05067
696-706 # coverage from PDB
1o6n
residues 1-16
chain a
[81093]
1iyt
residues 1-42
chain a
[76974]
1ba4
residues 1-40
chain a
[46312]
1bjc
residues 1-28
chain a
[46313]
1hz3
residues 10-35
chain a
[46316]
1bjb
residues 1-28
chain a
[46317]
1qcm
residues 25-35
chain a
[46309]
1aml
residues 1-40
chain a
[46314]
1ba6
residues 1-40
chain a
[46315]
1amc
residues 1-28
chain a
[46311]
1amb
residues 1-28
chain a
[46310]
1qyt
chain a
[111662]
1qwp
chain a
[104621]
1qxc
chain a
[104643]
Rat (Rattus norvegicus)
[TaxId: 10116]
[82978] (1)
1nmj
residues 1-28
chain a
[80660]
Islet amyloid polypeptide [103742]
Human (Homo sapiens)
[TaxId: 9606]
[103743] (1)
1kuw
chain a
[91039]
Transthyretin amyloid peptide [103744]
Human (Homo sapiens)
[TaxId: 9606]
[103745] (1)
1rvs
chain a
[97930]
Fibril-forming peptide [118402]
Synthetic
[118403] (1)
2bfi
chain a
[116718]
Gelsolin fragment (residues 150-169)
[58609] (1)
Gelsolin fragment (residues 150-169)
[58610] (1)
uperfamily
Gelsolin fragment (residues 150-169)
[58611] (1)
Gelsolin fragment (residues 150-169) [58612]
Synthetic
[58613] (1)
1sol
chain a
[46318]
Acetylcholine receptor fragment (residues alpha 67-76)
[58614] (1)
Acetylcholine receptor fragment (residues alpha 67-76)
[58615] (1)
uperfamily
Acetylcholine receptor fragment (residues alpha 67-76)
[58616] (1)
Acetylcholine receptor fragment (residues alpha 67-76) [58617]
has different conformations in free and antibody-bound forms
Pacific electric ray (Torpedo californica)
[TaxId: 7787]
[58618] (2)
1tos
chain a
[46319]
1tor
chain a
[46320]
Thrombomodulin EGF domain fragment (residues 409-426)
[58619] (1)
Thrombomodulin EGF domain fragment (residues 409-426)
[58620] (1)
uperfamily
Thrombomodulin EGF domain fragment (residues 409-426)
[58621] (1)
Thrombomodulin EGF domain fragment (residues 409-426) [58622]
Human (Homo sapiens)
[TaxId: 9606]
[58623] (3)
1egt
chain a
[46321]
1fgd
chain a
[46322]
1fge
chain a
[46323]
C-terminal fragment of thermolysin
[63387] (1)
C-terminal fragment of thermolysin
[63388] (1)
uperfamily
C-terminal fragment of thermolysin
[63389] (1)
C-terminal fragment of thermolysin [63390]
Bacillus thermoproteolyticus
[TaxId: 1427]
[63391] (1)
1trl
residues 255-316
chain a
[18263]
chain b
[18264]
Capsid protein major homology region peptide analog
[58629] (1)
Capsid protein major homology region peptide analog
[58630] (1)
uperfamily
Capsid protein major homology region peptide analog
[58631] (2)
Capsid protein major homology region peptide analog [58632]
Moloney murine leukemia virus, MoMLV
[TaxId: 11801]
[58633] (1)
1bm4
chain a
[46325]
Human immunodeficiency virus type 1, HIV-1
[TaxId: 11676]
[58634] (1)
1bmx
chain a
[46326]
CD4 and CD8 receptor regions
[58635] (1)
CD4 and CD8 receptor regions
[58636] (1)
uperfamily
CD4 and CD8 receptor regions
[58637] (2)
interact with proto-oncogene tyrosine-protein kinase lck
T-cell surface glycoprotein CD4 [58638]
Human (Homo sapiens)
[TaxId: 9606]
[58639] (2)
1q68
residues 421-458
chain a
[95962]
1wbr
residues 428-444 (403-419 in old numbering)
chain a
[46327]
T-cell surface glycoprotein CD8 alpha chain [103746]
Human (Homo sapiens)
[TaxId: 9606]
[103747] (1)
1q69
chain a
[95964]
Proto-oncogene tyrosine-protein kinase lck CD4/CD8 interacting region
[103748] (1)
Proto-oncogene tyrosine-protein kinase lck CD4/CD8 interacting region
[103749] (1)
uperfamily
Proto-oncogene tyrosine-protein kinase lck CD4/CD8 interacting region
[103750] (1)
Proto-oncogene tyrosine-protein kinase lck CD4/CD8 interacting region [103751]
zinc ion-mediated interaction
Human (Homo sapiens)
[TaxId: 9606]
[103752] (2)
1q68
chain b
[95963]
1q69
chain b
[95965]
Heparin binding site of non collagenous domain I (nc1) of collagen facit xiv
[58640] (1)
Heparin binding site of non collagenous domain I (nc1) of collagen facit xiv
[58641] (1)
uperfamily
Heparin binding site of non collagenous domain I (nc1) of collagen facit xiv
[58642] (1)
Heparin binding site of non collagenous domain I (nc1) of collagen facit xiv [58643]
Synthetic
[58644] (2)
1b9p
chain a
[46328]
1b9q
chain a
[46329]
GroES fragments
[58645] (1)
GroES fragments
[58646] (1)
uperfamily
GroES fragments
[58647] (2)
GroES, fragment of mobile loop [58648]
Escherichia coli
[TaxId: 562]
[58649] (1)
1egs
chain a
[46330]
cpn10 (GroES) N-terminal fragment [90286]
Mycobacterium tuberculosis
[TaxId: 1773]
[90287] (2)
1p82
chain a
[87848]
1p83
chain a
[87849]
cAMP and cGMP phosphodiesterase (PDE) fragments
[58650] (1)
cAMP and cGMP phosphodiesterase (PDE) fragments
[58651] (1)
uperfamily
cAMP and cGMP phosphodiesterase (PDE) fragments
[58652] (2)
not a true family
N-terminal splice region of cAMP phosphodiesterase [58653]
Rat (Rattus norvegicus)
[TaxId: 10116]
[58654] (1)
1loi
chain a
[46331]
cGMP-PDE gamma [58655]
Cow (Bos taurus)
[TaxId: 9913]
[58656] (1)
1fqj
residues 46-87 bound to Gi1 alpha
complexed with alf, gdp, mg
chain c
[46332]
HIV-1 Nef protein fragments
[58657] (1)
HIV-1 Nef protein fragments
[58658] (1)
uperfamily
HIV-1 Nef protein fragments
[58659] (1)
HIV-1 Nef protein fragments [58660]
Synthetic
[58661] (3)
1zec
residues 1-25
chain a
[46333]
1qa4
anchor domain; res. 2-57
chain a
[46334]
1qa5
anchor domain; res. 2-57
chain a
[46335]
HIV-1 envelope gp120 protein fragments
[58662] (1)
HIV-1 envelope gp120 protein fragments
[58663] (1)
uperfamily
HIV-1 envelope gp120 protein fragments
[58664] (2)
V3 loop fragments [58665]
Synthetic
[58666] (4)
1b03
consensus peptide; antibody-bound
chain a
[46336]
1ce4
chain a
[46337]
1nj0
antibody-bound
chain a
[80544]
1niz
antibody-bound
chain a
[80543]
C5 fragment [82979]
Synthetic
[82980] (1)
1meq
chain a
[79036]
HIV-1 gp41 fragments
[70010] (1)
HIV-1 gp41 fragments
[70011] (1)
uperfamily
HIV-1 gp41 fragments
[70012] (4)
HIV-1 gp41 TRP-rich peptide [70013]
Synthetic
[70014] (2)
1jau
bound to dpc micelles
chain a
[66474]
1jav
bound to dpc micelles
chain a
[66475]
Peptide mimicking the loop 600-612 [82981]
Synthetic
[82982] (8)
1j9v
chain a
[84136]
1jar
chain a
[84142]
1jc8
chain a
[84153]
1j8z
chain a
[84134]
1jaa
chain a
[84137]
1jcp
chain a
[84166]
1im7
cyclic analogue
chain a
[76752]
1j8n
chain a
[84133]
Fragment 659-671 13-mer peptide [82983]
2f5 mab epitope
Synthetic
[82984] (3)
1mzi
chain a
[91498]
1lcx
chain a
[77883]
1lb0
chain a
[77868]
N-Terminal fusion peptide [90288]
Synthetic
[90289] (1)
1p5a
chain a
[87795]
Hepatitis C virus N-terminal capsid protein fragment 2-45
[58667] (1)
Hepatitis C virus N-terminal capsid protein fragment 2-45
[58668] (1)
uperfamily
Hepatitis C virus N-terminal capsid protein fragment 2-45
[58669] (1)
Hepatitis C virus N-terminal capsid protein fragment 2-45 [58670]
Synthetic
[58671] (1)
1cwx
chain a
[46338]
P27(KIP1) fragment 22-106
[58672] (1)
P27(KIP1) fragment 22-106
[58673] (1)
uperfamily
P27(KIP1) fragment 22-106
[58674] (1)
P27(KIP1) fragment 22-106 [58675]
Human (Homo sapiens)
[TaxId: 9606]
[58676] (1)
1jsu
complexed with so4; mutant
chain c
[46339]
Transducin alpha-1 subunit rhodopsin binding domain (res. 340-350)
[58677] (1)
Transducin alpha-1 subunit rhodopsin binding domain (res. 340-350)
[58678] (1)
uperfamily
Transducin alpha-1 subunit rhodopsin binding domain (res. 340-350)
[58679] (1)
Transducin alpha-1 subunit rhodopsin binding domain (res. 340-350) [58680]
Cow (Bos taurus)
[TaxId: 9913]
[58681] (2)
1lvz
chain a
[78247]
1aqg
chain a
[46340]
Transducin gamma-t1 subunit rhodopsin bound fragment (res. 60-71)
[90290] (1)
Transducin gamma-t1 subunit rhodopsin bound fragment (res. 60-71)
[90291] (1)
uperfamily
Transducin gamma-t1 subunit rhodopsin bound fragment (res. 60-71)
[90292] (1)
Transducin gamma-t1 subunit rhodopsin bound fragment (res. 60-71) [90293]
Cow (Bos taurus)
[TaxId: 9913]
[90294] (1)
1mf6
chain a
[84936]
alpha-lactalbumin peptide model
[58682] (1)
alpha-lactalbumin peptide model
[58683] (1)
uperfamily
alpha-lactalbumin peptide model
[58684] (1)
alpha-lactalbumin peptide model [58685]
Synthetic
[58686] (1)
1cb3
chain a
[46341]
Coat protein-binding domain of bacteriophage P22 scaffolding protein
[58687] (1)
Coat protein-binding domain of bacteriophage P22 scaffolding protein
[58688] (1)
uperfamily
Coat protein-binding domain of bacteriophage P22 scaffolding protein
[58689] (1)
Coat protein-binding domain of bacteriophage P22 scaffolding protein [58690]
Salmonella bacteriophage P22
[TaxId: 10754]
[58691] (2)
1gp8
chain a
[46342]
2gp8
chain a
[46343]
Immunoreceptor tyrosine kinase activation motif, ITAM
[58692] (1)
Immunoreceptor tyrosine kinase activation motif, ITAM
[58693] (1)
uperfamily
Immunoreceptor tyrosine kinase activation motif, ITAM
[58694] (1)
Ig-alpha [58695]
Synthetic
[58696] (1)
1cv9
chain a
[46344]
Integrin fragments
[58697] (1)
Integrin fragments
[58698] (1)
uperfamily
Integrin fragments
[58699] (3)
Cytoplasmic domain of the integrin alpha-iib subunit [58700]
Synthetic
[58701] (5)
1m8o
chain a
[78775]
1dpq
chain a
[46345]
1dpk
chain a
[46346]
1s4w
chain a
[98513]
1kup
chain a
[73015]
Cytoplasmic domain of the integrin beta-3 [75747]
Synthetic
[75748] (4)
1m8o
chain b
[78776]
1s4x
chain a
[98514]
1kuz
chain a
[73023]
chain b
[73024]
1kup
chain b
[73016]
Ion-selective ligand for platelet integrin alphaiib-beta3 [75749]
Synthetic
[75750] (4)
1i6y
ligand a1
chain a
[71120]
1i98
ligand d18
chain a
[71135]
1i8e
ligand a22
chain a
[71127]
1i93
ligand d16
chain a
[71134]
Human glutathione reductase (HGR) inhibitor
[58702] (1)
Human glutathione reductase (HGR) inhibitor
[58703] (1)
uperfamily
Human glutathione reductase (HGR) inhibitor
[58704] (1)
Human glutathione reductase (HGR) inhibitor [58705]
protein-dimerization inhibitor based on a fragment from the enzyme sequence
Synthetic
[58706] (1)
1alg
chain a
[46347]
Small subunit C-terminal inhibitory peptide of ribonucleotide reductase
[58707] (1)
Small subunit C-terminal inhibitory peptide of ribonucleotide reductase
[58708] (1)
uperfamily
Small subunit C-terminal inhibitory peptide of ribonucleotide reductase
[58709] (1)
Small subunit C-terminal inhibitory peptide of ribonucleotide reductase [58710]
as bound to the large subunit
Mouse (Mus musculus)
[TaxId: 10090]
[58711] (1)
1aft
chain a
[46348]
Histone H3 C-terminal fragment 130-135
[58712] (1)
Histone H3 C-terminal fragment 130-135
[58713] (1)
uperfamily
Histone H3 C-terminal fragment 130-135
[58714] (1)
Histone H3 C-terminal fragment 130-135 [58715]
as bound to a monoclonal antibody
Synthetic, based on Homo sapiens sequence
[58716] (5)
1ct6
chain a
[46353]
1cs9
chain a
[46352]
1cw8
the retro-inverso analogue
chain a
[46349]
1cwz
the retro-inverso analogue
chain a
[46350]
1cvq
the retro-inverso analogue
chain a
[46351]
Smad-binding domain of Sara
[58717] (1)
Smad-binding domain of Sara
[58718] (1)
uperfamily
Smad-binding domain of Sara
[58719] (1)
Smad-binding domain of Sara [58720]
Human (Homo sapiens)
[TaxId: 9606]
[58721] (2)
1dev
bound to the Smad2 MH2 domain
chain b
[46354]
chain d
[46355]
1mk2
bound to the Smad3 MH2 domain
complexed with acy
chain b
[79218]
Transactivation domain
[81275] (1)
Transactivation domain
[74800] (1)
uperfamily
Transactivation domain
[74801] (2)
C-terminal activation domain (CTAD) of HIF-1alpha [74802]
Human (Homo sapiens)
[TaxId: 9606]
[74803] (4)
1h2k
complexed with FIH1
complexed with fe2, oga, so4
chain s
[76573]
1h2l
complexed with FIH1
complexed with akg, fe2, so4
chain s
[76575]
1l8c
complexed with TAZ1 domain of mouse CBP
complexed with zn
chain b
[73686]
1l3e
complexed with TAZ1 domain of human CBP
complexed with zn
chain a
[73535]
Cbp/p300-interacting transactivator 2, Cited2 [90295]
Human (Homo sapiens)
[TaxId: 9606]
[90296] (2)
1r8u
complexed with TAZ1 domain of mouse CBP
complexed with zn
chain a
[97249]
1p4q
complexed with TAZ1 domain of mouse CBP
complexed with zn
chain a
[87777]
Nuclear receptor coactivator Src-1
[100901] (1)
Nuclear receptor coactivator Src-1
[48682] (1)
uperfamily
Nuclear receptor coactivator Src-1
[48683] (1)
Nuclear receptor coactivator Src-1 [48684]
Human (Homo sapiens)
[TaxId: 9606]
[48685] (3)
SQ
O43792
687-697 ! SQ
O43792
687-700
1pzl
complexed with myr; mutant
chain b
[104394]
2prg
complexed with brl
chain c
[19644]
1tfc
chain c
[106852]
chain d
[106853]
TBP-binding domain of the transcription factor IIIb Brf1 subunit
[90297] (1)
TBP-binding domain of the transcription factor IIIb Brf1 subunit
[90298] (1)
uperfamily
TBP-binding domain of the transcription factor IIIb Brf1 subunit
[90299] (1)
TBP-binding domain of the transcription factor IIIb Brf1 subunit [90300]
Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]
[90301] (1)
1ngm
chain b
[85687]
chain f
[85690]
chain j
[85693]
chain n
[85696]
BRCA2 BRC4 repeat
[82985] (1)
BRCA2 BRC4 repeat
[82986] (1)
uperfamily
BRCA2 BRC4 repeat
[82987] (1)
BRCA2 BRC4 repeat [82988]
Human (Homo sapiens)
[TaxId: 9606]
[82989] (1)
1n0w
bound to Rad51
complexed with cl, edo, mg, mse
chain b
[79773]
Peptide derived from p-21 activated kinase
[58722] (1)
Peptide derived from p-21 activated kinase
[58723] (1)
uperfamily
Peptide derived from p-21 activated kinase
[58724] (2)
Peptide derived from p-21 activated kinase [58725]
Mouse (Mus musculus)
[TaxId: 10090]
[58726] (1)
1ees
bound to CDC42Hs
chain b
[46356]
Norway rat (Rattus norvegicus)
[TaxId: 10116]
[58727] (1)
1e0a
bound to CDC42Hs
complexed with gnp, mg; mutant
chain b
[46357]
pak1 autoregulatory domain
[58728] (1)
pak1 autoregulatory domain
[58729] (1)
uperfamily
pak1 autoregulatory domain
[58730] (1)
pak1 autoregulatory domain [58731]
Human (Homo sapiens)
[TaxId: 9606]
[58732] (1)
1f3m
complexed with iod; mutant
chain a
[46358]
chain b
[46359]
Translocated intimin receptor (tir) intimin-binding domain
[58733] (1)
Translocated intimin receptor (tir) intimin-binding domain
[58734] (1)
uperfamily
Translocated intimin receptor (tir) intimin-binding domain
[58735] (1)
Translocated intimin receptor (tir) intimin-binding domain [58736]
Escherichia coli
[TaxId: 562]
[58737] (1)
1f02
chain t
[46360]
Fragments of the L-type calcium channel alpha subunit Cav.1 (dihydropyridine receptor)
[58738] (1)
Fragments of the L-type calcium channel alpha subunit Cav.1 (dihydropyridine receptor)
[58739] (1)
uperfamily
Fragments of the L-type calcium channel alpha subunit Cav.1 (dihydropyridine receptor)
[58740] (4)
Fragments of the L-type calcium channel alpha subunit Cav.1 (dihydropyridine receptor) [58741]
Synthetic
[58742] (2)
1du1
chain a
[46361]
1jzp
chain a
[71971]
Rabbit (Oryctolagus cuniculus)
[TaxId: 9986]
[111511] (1)
SQ
P07293
358-374
1t3l
complexed with a Cab2 domain
mutant
chain b
[106360]
Human (Homo sapiens)
[TaxId: 9606]
[111512] (1)
SQ
Q13936
428-443
1t0j
complexed with cl
chain c
[106213]
Rat (Rattus norvegicus)
[TaxId: 10116]
[111513] (1)
SQ
P22002
452-476
1vyt
chain e
[108912]
chain f
[108913]
Tumor suppressor p53 fragments
[58743] (1)
Tumor suppressor p53 fragments
[58744] (1)
uperfamily
Tumor suppressor p53 fragments
[58745] (2)
C-terminal negative regulatory domain [58746]
Synthetic
[58747] (1)
1dt7
complexed with ca
chain x
[46362]
chain y
[46363]
N-terminal, MDM-2 binding domain [103753]
selectively cytotoxic to cancer cells
Synthetic
[103754] (2)
1q2f
chain a
[95627]
1q2i
chain a
[95628]
FxFG nucleoporin repeats
[58748] (1)
FxFG nucleoporin repeats
[58749] (1)
uperfamily
FxFG nucleoporin repeats
[58750] (1)
FxFG nucleoporin repeats [58751]
Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]
[58752] (1)
1f59
as bound to importin-beta
chain c
[46364]
chain d
[46365]
beta-Catenine bound non-globular protein regions
[58753] (1)
beta-Catenine bound non-globular protein regions
[58754] (1)
uperfamily
beta-Catenine bound non-globular protein regions
[58755] (3)
TCF3-CBD (catenin-binding domain) [58756]
Frog (Xenopus)
[TaxId: 262014]
[58757] (1)
1g3j
chain b
[46366]
chain d
[46367]
htcf-4 [70015]
Human (Homo sapiens)
[TaxId: 9606]
[70016] (2)
1jdh
chain b
[66550]
1jpw
chain d
[67062]
chain e
[67063]
chain f
[67064]
Phosphorylated E-cadherin [64636]
Mouse (Mus musculus)
[TaxId: 10090]
[64637] (2)
1i7w
complexed with cl, zn
chain b
[61910]
chain d
[61912]
1i7x
chain b
[61914]
chain d
[61916]
Synaptobrevin-II fragments
[58758] (1)
Synaptobrevin-II fragments
[58759] (1)
uperfamily
Synaptobrevin-II fragments
[58760] (1)
Synaptobrevin-II fragments [58761]
Synthetic
[58762] (1)
1f83
as bound to botulinum neurotoxin type b catalytic domain
complexed with zn
chain b
[46368]
chain c
[46369]
VMIP-II fragment
[58763] (1)
VMIP-II fragment
[58764] (1)
uperfamily
VMIP-II fragment
[58765] (1)
VMIP-II fragment [58766]
Kaposi's sarcoma-associated herpesvirus
[TaxId: 37296]
[58767] (1)
1hff
peptide 1-10
chain a
[46370]
Papillomavirus e6-interacting peptide of e6ap
[58768] (1)
Papillomavirus e6-interacting peptide of e6ap
[58769] (1)
uperfamily
Papillomavirus e6-interacting peptide of e6ap
[58770] (1)
Papillomavirus e6-interacting peptide of e6ap [58771]
Human (Homo sapiens)
[TaxId: 9606]
[58772] (1)
1eqx
chain a
[46371]
Isolated insulin B-chain
[58773] (1)
Isolated insulin B-chain
[58774] (1)
uperfamily
Isolated insulin B-chain
[58775] (3)
Isolated insulin B-chain [58776]
Synthetic, based on Bos taurus sequence
[58777] (1)
1ho0
chain a
[46372]
synthetic construct
[161302] (52)
2oly
automatically matched to d1ho0a_
region b:1-28
[148825]
2oly
automatically matched to d1ho0a_
region d:1-28
[148826]
2oly
automatically matched to d1ho0a_
region f:1-29
[148827]
2oly
automatically matched to d1ho0a_
region h:1-29
[148828]
2oly
automatically matched to d1ho0a_
region j:1-28
[148829]
2oly
automatically matched to d1ho0a_
region l:1-28
[148830]
2olz
automatically matched to d1ho0a_
region b:1-29
[148831]
2olz
automatically matched to d1ho0a_
region d:1-29
[148832]
2olz
automatically matched to d1ho0a_
region f:1-28
[148833]
2olz
automatically matched to d1ho0a_
region h:1-29
[148834]
2olz
automatically matched to d1ho0a_
region j:1-29
[148835]
2olz
automatically matched to d1ho0a_
region l:1-28
[148836]
2om1
automatically matched to d1ho0a_
region 2:1-29
[148849]
2om1
automatically matched to d1ho0a_
region 4:1-29
[148850]
2om1
automatically matched to d1ho0a_
region b:1-29
[148851]
2om1
automatically matched to d1ho0a_
region d:1-29
[148852]
2om1
automatically matched to d1ho0a_
region f:1-29
[148853]
2om1
automatically matched to d1ho0a_
region h:1-29
[148854]
2om1
automatically matched to d1ho0a_
region j:1-29
[148855]
2om1
automatically matched to d1ho0a_
region l:1-29
[148856]
2om1
automatically matched to d1ho0a_
region r:1-29
[148857]
2om1
automatically matched to d1ho0a_
region t:1-29
[148858]
2om1
automatically matched to d1ho0a_
region v:1-29
[148859]
2om1
automatically matched to d1ho0a_
region y:1-29
[148860]
2vjz
automatically matched to d1ho0a_
region b:1-29
[153213]
2vjz
automatically matched to d1ho0a_
region d:1-28
[153214]
2om0
automatically matched to d1ho0a_
region 2:1-29
[148837]
2om0
automatically matched to d1ho0a_
region 4:1-29
[148838]
2om0
automatically matched to d1ho0a_
region b:1-29
[148839]
2om0
automatically matched to d1ho0a_
region d:1-29
[148840]
2om0
automatically matched to d1ho0a_
region f:1-29
[148841]
2om0
automatically matched to d1ho0a_
region h:1-29
[148842]
2om0
automatically matched to d1ho0a_
region j:1-29
[148843]
2om0
automatically matched to d1ho0a_
region l:1-29
[148844]
2om0
automatically matched to d1ho0a_
region r:1-29
[148845]
2om0
automatically matched to d1ho0a_
region t:1-29
[148846]
2om0
automatically matched to d1ho0a_
region v:1-29
[148847]
2om0
automatically matched to d1ho0a_
region y:1-29
[148848]
2r34
automatically matched to d1ho0a_
region b:1-29
[151550]
2r34
automatically matched to d1ho0a_
region d:1-29
[151551]
2qiu
automatically matched to d1ho0a_
region b:1-29
[150812]
2qiu
automatically matched to d1ho0a_
region d:1-29
[150813]
2r36
automatically matched to d1ho0a_
region b:1-29
[151554]
2r36
automatically matched to d1ho0a_
region d:1-29
[151555]
2vk0
automatically matched to d1ho0a_
region b:3-29
[153215]
2vk0
automatically matched to d1ho0a_
region d:3-29
[153216]
2zp6
automatically matched to d1ho0a_
region b:1-30
[154750]
2zp6
automatically matched to d1ho0a_
region d:1-30
[154751]
2efa
automatically matched to d1ho0a_
region b:1-30
[146812]
2r35
automatically matched to d1ho0a_
region b:1-28
[151552]
2r35
automatically matched to d1ho0a_
region d:1-29
[151553]
2jv1
automatically matched to d1ho0a_
region b:1-29
[148221]
Homo sapiens
[TaxId: 9606]
[161303] (4)
3bxq
automatically matched to d1ho0a_
region b:1-29
[155719]
2juv
automatically matched to d1ho0a_
region b:1-27
[148216]
2jum
automatically matched to d1ho0a_
region b:1-27
[148213]
2juu
automatically matched to d1ho0a_
region b:1-27
[148215]
N-terminal hairpin of ubiquitin (residues 1-17)
[58778] (1)
N-terminal hairpin of ubiquitin (residues 1-17)
[58779] (1)
uperfamily
N-terminal hairpin of ubiquitin (residues 1-17)
[58780] (1)
N-terminal hairpin of ubiquitin (residues 1-17) [58781]
Synthetic, based on Bos taurus sequence
[58782] (1)
1e0q
chain a
[46373]
alpha-helical hairpin of p8mtcp1
[58783] (1)
alpha-helical hairpin of p8mtcp1
[58784] (1)
uperfamily
alpha-helical hairpin of p8mtcp1
[58785] (1)
alpha-helical hairpin of p8mtcp1 [58786]
Synthetic
[58787] (1)
1ei0
chain a
[46374]
Syndecan-4 cytoplasmic domain
[64638] (1)
Syndecan-4 cytoplasmic domain
[64639] (1)
uperfamily
Syndecan-4 cytoplasmic domain
[64640] (1)
Syndecan-4 cytoplasmic domain [64641]
Synthetic
[64642] (2)
1ejq
Solution structure in the presence of phosphatidylinositol 4,5- bisphosphate
chain a
[59432]
chain b
[59433]
1ejp
chain a
[59430]
chain b
[59431]
Actin-binding peptides
[70017] (1)
Actin-binding peptides
[70018] (1)
uperfamily
Actin-binding peptides
[70019] (2)
Thymosin beta9 [70020]
actin-binding peptide
Cow (Bos taurus)
[TaxId: 9913]
[70021] (1)
1hj0
chain a
[65842]
Ciboulot [111514]
Fruit fly (Drosophila melanogaster)
[TaxId: 7227]
[111515] (1)
SQ
O97428
10-34
1sqk
complexed with adp, lar, mg
chain b
[105924]
Pituitary adenylate cyclase activating polypeptide, pacap21
[64643] (1)
Pituitary adenylate cyclase activating polypeptide, pacap21
[64644] (1)
uperfamily
Pituitary adenylate cyclase activating polypeptide, pacap21
[64645] (1)
Pituitary adenylate cyclase activating polypeptide, pacap21 [64646]
Synthetic
[64647] (1)
1gea
residues 132-152; receptor-bound conformation of p
chain a
[60464]
Rack1 interaction site of the CAMP-specific phosphodiesterase pde4d5.
[70022] (1)
Rack1 interaction site of the CAMP-specific phosphodiesterase pde4d5.
[70023] (1)
uperfamily
Rack1 interaction site of the CAMP-specific phosphodiesterase pde4d5.
[70024] (1)
Rack1 interaction site of the CAMP-specific phosphodiesterase pde4d5. [70025]
Synthetic
[70026] (1)
1e9k
chain a
[64826]
Prepeptide of 5-ALAS
[70027] (1)
Prepeptide of 5-ALAS
[70028] (1)
uperfamily
Prepeptide of 5-ALAS
[70029] (1)
Prepeptide of 5-ALAS [70030]
Synthetic, mouse-based
[70031] (2)
1h7d
49 aa presequence
chain a
[65701]
1h7j
26 aa presequence
chain a
[65702]
Cholecystokinin receptor fragments
[64648] (1)
Cholecystokinin receptor fragments
[64649] (1)
uperfamily
Cholecystokinin receptor fragments
[64650] (2)
Cholecystokinin A (CCK-A) receptor [64651]
Synthetic
[64652] (1)
1hzn
the third extracellular loop; residues 329-357
chain a
[61454]
Gastrin/cholecystokinin B receptor [82990]
Synthetic
[82991] (1)
1l4t
the third extracellular loop; residues 352-379
chain a
[77694]
the cytoplasmic N-terminus of the bk beta-subunit kcnmb2
[70032] (1)
the cytoplasmic N-terminus of the bk beta-subunit kcnmb2
[70033] (1)
uperfamily
the cytoplasmic N-terminus of the bk beta-subunit kcnmb2
[70034] (1)
the cytoplasmic N-terminus of the bk beta-subunit kcnmb2 [70035]
Synthetic
[70036] (1)
1jo6
chain a
[66989]
Trypsin inhibitor SFTIf-1
[64653] (1)
Trypsin inhibitor SFTIf-1
[64654] (1)
uperfamily
Trypsin inhibitor SFTIf-1
[64655] (1)
Trypsin inhibitor SFTIf-1 [64656]
Sunflower (Helianthus annuus)
[TaxId: 4232]
[64657] (2)
1jbl
chain a
[62847]
1jbn
an acyclic permutant
chain a
[62848]
Prion protein fragments
[70037] (1)
Prion protein fragments
[70038] (1)
uperfamily
Prion protein fragments
[70039] (3)
Prion protein fragments [70040]
Synthetic, sheep sequence-based
[70041] (3)
1s4t
21-mer peptide, residues 133-155
chain a
[98510]
1m25
26-mer peptide, residues 145-169
chain a
[74431]
1g04
26-mer peptide, residues 145-169
chain a
[65075]
Human (Homo sapiens)
[TaxId: 9606]
[103755] (2)
1oei
residues 61-84; three 8-aa repeats
chain a
[92797]
1oeh
residues 61-68; one 8-aa repeat
chain a
[92796]
synthetic construct
[161304] (2)
2rmv
automatically matched to d1g04a_
region a:142-167
[152168]
2rmw
automatically matched to d1g04a_
region a:142-167
[152169]
Tumor suppressor protein p19-ARF fragment
[70042] (1)
Tumor suppressor protein p19-ARF fragment
[70043] (1)
uperfamily
Tumor suppressor protein p19-ARF fragment
[70044] (1)
Tumor suppressor protein p19-ARF fragment [70045]
Mouse (Mus musculus)
[TaxId: 10090]
[70046] (1)
1hn3
chain a
[65892]
Antennapedia homeodomain fragments
[70047] (1)
Antennapedia homeodomain fragments
[70048] (1)
uperfamily
Antennapedia homeodomain fragments
[70049] (1)
Antennapedia homeodomain fragments [70050]
Synthetic
[70051] (4)
1kz5
chain a
[68888]
1kz0
chain a
[68886]
1kz2
chain a
[68887]
1omq
chain a
[87085]
Sheep myeloid antimicrobial peptide SMAP29 based peptides
[75751] (1)
Sheep myeloid antimicrobial peptide SMAP29 based peptides
[75752] (1)
uperfamily
Sheep myeloid antimicrobial peptide SMAP29 based peptides
[75753] (1)
Sheep myeloid antimicrobial peptide SMAP29 based peptides [75754]
Synthetic
[75755] (4)
1fry
chain a
[70146]
1hu5
ovispirin-1
chain a
[71086]
1hu7
T7 novispirin
chain a
[71088]
1hu6
G10 novispirin
chain a
[71087]
alpha-2a adrenergic receptor pepride t3-i2
[75756] (1)
alpha-2a adrenergic receptor pepride t3-i2
[75757] (1)
uperfamily
alpha-2a adrenergic receptor pepride t3-i2
[75758] (1)
alpha-2a adrenergic receptor pepride t3-i2 [75759]
Synthetic
[75760] (4)
1hll
chain a
[70966]
1hof
chain a
[70975]
1ho9
chain a
[70973]
1hod
chain a
[70974]
Catestatin fragment from chromogranin A
[75761] (1)
Catestatin fragment from chromogranin A
[75762] (1)
uperfamily
Catestatin fragment from chromogranin A
[75763] (1)
Catestatin fragment from chromogranin A [75764]
Synthetic, human sequence-based
[75765] (2)
1lv4
chain a
[74275]
1n2y
SS-cyclized
chain a
[79864]
Bhpbr3, the Baff-binding loop of br3 embedded in a beta-hairpin peptide
[82992] (1)
Bhpbr3, the Baff-binding loop of br3 embedded in a beta-hairpin peptide
[82993] (1)
uperfamily
Bhpbr3, the Baff-binding loop of br3 embedded in a beta-hairpin peptide
[82994] (1)
Bhpbr3, the Baff-binding loop of br3 embedded in a beta-hairpin peptide [82995]
Synthetic
[82996] (1)
1mpv
SS-cyclized
chain a
[79388]
N-terminal fragment of gastric H/K-ATPase
[82997] (1)
N-terminal fragment of gastric H/K-ATPase
[82998] (1)
uperfamily
N-terminal fragment of gastric H/K-ATPase
[82999] (1)
N-terminal fragment of gastric H/K-ATPase [83000]
Synthetic, based on pig sequence
[83001] (2)
1iwc
TFE-induced structure
chain a
[76872]
1iwf
chain a
[76873]
Barstar fragment
[83002] (1)
Barstar fragment
[83003] (1)
uperfamily
Barstar fragment
[83004] (1)
Barstar fragment [83005]
Bacillus amyloliquefaciens
[TaxId: 1390]
[83006] (1)
1l1k
chain a
[77652]
Cannabinoid receptor 1 (CB1) fragment
[83007] (1)
Cannabinoid receptor 1 (CB1) fragment
[83008] (1)
uperfamily
Cannabinoid receptor 1 (CB1) fragment
[83009] (1)
Cannabinoid receptor 1 (CB1) fragment [83010]
Synthetic, based on human sequence
[83011] (2)
1lvq
bound to g(alpha)i
chain a
[78245]
1lvr
bound to g(alpha)i
chain a
[78246]
Ribosomal protein L10
[64658] (1)
Ribosomal protein L10
[64659] (1)
uperfamily
Ribosomal protein L10
[64660] (1)
Ribosomal protein L10 [64661]
two alpha-helical segments visible in the crystal structure
Archaeon Haloarcula marismortui
[TaxId: 2238]
[64662] (42)
SQ
P15825
1vqo
automatically matched to 1VQ4 G:12-73
complexed with 1ma, cd, cl, k, mg, na, omg, omu, ppu, psu, sr, ur3
region g:12-73
[144430]
1vq8
automatically matched to 1VQ4 G:12-73
complexed with 1ma, aca, cd, cl, k, mg, na, omg, omu, psu, sps, sr, ur3
region g:12-73
[144418]
1vqp
automatically matched to 1VQ4 G:12-73
complexed with 1ma, cd, cl, dcz, hfa, k, mg, na, omg, omu, po2, ppu, psu, sr, ur3
region g:12-73
[144432]
1jj2
complexed with cd, cl, k, mg, na
chain g
[63092]
1s72
complexed with 1ma, cd, cl, k, mg, na, omg, omu, psu, ur3
chain g
[105326]
1vqk
automatically matched to 1VQ4 G:12-73
complexed with 1ma, aca, cd, cl, k, mg, na, omg, omu, psu, sr, ur3
region g:12-73
[144422]
1vql
automatically matched to 1VQ4 G:12-73
complexed with 1ma, cd, cl, k, mg, na, omg, omu, ppu, psu, sr, tse, ur3
region g:12-73
[144424]
1vqm
automatically matched to 1VQ4 G:12-73
complexed with 1ma, cd, cl, k, mg, na, omg, omu, po2, ppu, psu, sr, ur3
region g:12-73
[144426]
1yhq
automatically matched to 1VQ4 G:12-73
complexed with 1ma, cd, cl, k, mg, na, omg, omu, psu, sr, ur3, zit; mutant
region g:12-73
[144637]
1vqn
automatically matched to 1VQ4 G:12-73
complexed with 1ma, aca, btn, cd, cl, hfa, k, mg, na, omg, omu, ppu, psu, sr, ur3
region g:12-73
[144428]
1yi2
automatically matched to 1VQ4 G:12-73
complexed with 1ma, cd, cl, ery, k, mg, na, omg, omu, psu, ur3; mutant
region g:12-73
[144639]
1yij
automatically matched to 1VQ4 G:12-73
complexed with 1ma, cd, cl, k, mg, na, omg, omu, psu, tel, ur3; mutant
region g:12-73
[144643]
1vq7
automatically matched to 1VQ4 G:12-73
complexed with 1ma, 2op, 5aa, cd, cl, k, mg, na, omg, omu, pae, psu, ur3
region g:12-73
[144416]
1vq4
complexed with 1ma, 2op, 5aa, cd, cl, k, mg, na, omg, omu, po2, psu, ur3
region g:12-73
[144410]
1vq5
automatically matched to 1VQ4 G:12-73
complexed with 1ma, 2op, 5aa, cd, cl, dcz, k, mg, na, omg, omu, po2, psu, ur3
region g:12-73
[144412]
1vq9
automatically matched to 1VQ4 G:12-73
complexed with 1ma, aca, cd, cl, k, mg, na, omg, omu, psu, sps, sr, ur3
region g:12-73
[144420]
2otl
automatically matched to 1VQ4 G:12-73
complexed with 1ma, cd, cl, gir, k, mg, na, omg, omu, psu, ur3
region g:12-73
[145730]
1m90
complexed with aca, cd, cl, k, mg, na, pha, sps
chain i
[78847]
1vq6
automatically matched to 1VQ4 G:12-73
complexed with 1ma, 5aa, aca, btn, cd, cl, hfa, k, mg, na, omg, omu, psu, ur3
region g:12-73
[144414]
1yit
automatically matched to 1VQ4 G:12-73
complexed with 1ma, cd, cl, k, mg, na, omg, omu, psu, ur3, vir, vrs
region g:12-73
[144645]
2otj
automatically matched to 1VQ4 G:12-73
complexed with 13t, 1ma, cd, cl, k, mg, na, omg, omu, psu, ur3
region g:12-73
[145728]
1nji
complexed with cd, cl, clm, k, mg, na; mutant
chain i
[85800]
1yjw
automatically matched to 1VQ4 G:12-73
complexed with 1ma, cd, cl, k, mg, na, omg, omu, psu, syb, ur3; mutant
region g:12-73
[144653]
2qex
automatically matched to 1VQ4 G:12-73
complexed with 1ma, cd, cl, k, mg, na, neg, omg, omu, psu, ur3
region g:12-73
[150695]
1kqs
complexed with aca, btn, cd, cl, k, mg, na, pha, ppu
chain g
[68822]
1kc8
complexed with bls, cd, cl, k, mg, na
chain i
[84364]
1yjn
automatically matched to 1VQ4 G:12-73
complexed with 1ma, cd, cl, cly, k, mg, na, omg, omu, psu, ur3; mutant
region g:12-73
[144651]
1n8r
complexed with cd, cl, k, mg, na, vir; mutant
chain i
[85436]
1k73
complexed with anm, cd, cl, k, mg, na
chain i
[84325]
1qvg
complexed with cd, cl, k, mg, na
chain g
[96399]
1q82
complexed with cd, cl, k, mg, na, ppu
chain i
[96136]
1qvf
complexed with cd, cl, k, mg, na
chain g
[96369]
1yj9
automatically matched to 1VQ4 G:12-73
complexed with 1ma, cd, cl, k, mg, na, omg, omu, psu, ur3; mutant
region g:12-73
[144647]
1q81
complexed with cd, cl, k, mg, na, ppu
chain i
[96106]
1k9m
complexed with cd, cl, k, mg, na, tyk
chain i
[72220]
1kd1
complexed with cd, cl, k, mg, na, spr
chain i
[72331]
1k8a
complexed with cai, cd, cl, k, mg, na
chain i
[72153]
1m1k
complexed with cd, cl, k, mg, na, zit
chain i
[74391]
3cme
automatically matched to 1VQ4 G:12-73
complexed with 1ma, 8an, aca, cd, cl, k, mg, na, omg, omu, phe, psu, sr, ur3
region g:12-73
[156814]
1q86
complexed with cd, cl, k, mg, na, pha
chain i
[96174]
2qa4
automatically matched to 1VQ4 G:12-73
complexed with cd, cl, k, mg, na, omg, omu, psu, ur3
region g:12-73
[150180]
1q7y
complexed with cd, cl, k, mg, na, po4, puy
chain i
[96072]
Ubiquitin interacting motif (UIM)
[90302] (1)
Ubiquitin interacting motif (UIM)
[90303] (1)
uperfamily
Ubiquitin interacting motif (UIM)
[90304] (2)
amphipathic helix
Vacuolar protein sorting-associated protein vps27p [90305]
Synthetic, based on yeast sequence
[90306] (3)
1o06
C-terminal UIM
chain a
[86524]
1q0v
tandem repeat of two UIMs
chain a
[95514]
1q0w
N-terminal UIM; complexed with ubiquitin
chain a
[95515]
26s proteasome non-ATPase regulatory subunit 4 (s5a) [103756]
Human (Homo sapiens)
[TaxId: 9606]
[103757] (3)
1uel
chain b
[99266]
1p9d
chain s
[94387]
1p9c
chain a
[94386]
Metal-binding peptide from MerP
[103758] (1)
Metal-binding peptide from MerP
[103759] (1)
uperfamily
Metal-binding peptide from MerP
[103760] (1)
Metal-binding peptide from MerP [103761]
Shigella flexneri
[TaxId: 623]
[103762] (1)
1dvw
chain a
[90442]
Marinostatin, MstI
[103763] (1)
Marinostatin, MstI
[103764] (1)
uperfamily
Marinostatin, MstI
[103765] (1)
Marinostatin, MstI [103766]
a protease inhibitor containing two ester linkages
Alteromonas sp.
[TaxId: 232]
[103767] (1)
1ixu
chain a
[90718]
Cross-reactive peptides from 60S acidic ribosomal protein p2
[103768] (1)
Cross-reactive peptides from 60S acidic ribosomal protein p2
[103769] (1)
uperfamily
Cross-reactive peptides from 60S acidic ribosomal protein p2
[103770] (2)
Cross-reactive peptides from 60S acidic ribosomal protein p2 [103771]
Synthetic, based on L. braziliensis sequence
[103772] (1)
1s4h
chain a
[98499]
Synthetic, based on human sequence
[103773] (1)
1s4j
chain a
[98500]
NTR, cyclotide processing element
[111516] (1)
NTR, cyclotide processing element
[111517] (1)
uperfamily
NTR, cyclotide processing element
[111518] (2)
Cyclotide k1 [111519]
Sweet violet (Viola odorata)
[TaxId: 97441]
[111520] (1)
SQ
Q5USN7
150-177
1wn4
chain a
[109426]
Kalata B3/B6 [111521]
Oldenlandia affinis
[TaxId: 60225]
[111522] (1)
SQ
P58455
1wn8
chain a
[109427]
HMG-box transcription factor 1 fragments
[111523] (1)
HMG-box transcription factor 1 fragments
[111524] (1)
uperfamily
HMG-box transcription factor 1 fragments
[111525] (1)
HMG-box transcription factor 1 fragments [111526]
Human (Homo sapiens)
[TaxId: 9606]
[111527] (1)
SQ
Q8TBM1
358-380
1s5r
chain a
[105280]
MAD protein fragments
[111528] (1)
MAD protein fragments
[111529] (1)
uperfamily
MAD protein fragments
[111530] (1)
MAD protein fragments [111531]
Human (Homo sapiens)
[TaxId: 9606]
[111532] (1)
SQ
Q05195
6-21 # structure of the B-HLH-Z region (57-136) is also known (1nlw chains A and D;
scop_sp: 81753
)
1s5q
chain a
[105278]
Fragments of TNF receptors
[111533] (1)
Fragments of TNF receptors
[111534] (1)
uperfamily
Fragments of TNF receptors
[111535] (1)
Lymphotoxin-beta receptor [111536]
Human (Homo sapiens)
[TaxId: 9606]
[111537] (1)
SQ
P36941
384-408
1rf3
chain b
[104917]
Ezrin-radixin-moesin binding phosphoprotein 50 (ebp50) fragments
[111538] (1)
Ezrin-radixin-moesin binding phosphoprotein 50 (ebp50) fragments
[111539] (1)
uperfamily
Ezrin-radixin-moesin binding phosphoprotein 50 (ebp50) fragments
[111540] (1)
Ezrin-radixin-moesin binding phosphoprotein 50 (ebp50) fragments [111541]
Human (Homo sapiens)
[TaxId: 9606]
[111542] (1)
SQ
O14745
321-358
1sgh
chain b
[105532]
Ribosomal protein L34p
[144320] (1)
non-globular, mainly alpha-helical
Ribosomal protein L34p
[144321] (1)
uperfamily
Ribosomal protein L34p
[144322] (3)
Pfam 00468
Ribosomal protein L34p [144323]
Escherichia coli
[TaxId: 562]
[144324] (8)
SQ
P0A7P5
1-46
2qam
automatically matched to d1vs621
complexed with mg, nmy, zn
region 2:1-46
[150236]
2i2t
automatically matched to 2AW4 2:1-46
complexed with mg, zn
region 2:1-46
[136996]
2i2v
automatically matched to 2AW4 2:1-46
complexed with mg, zn
region 2:1-46
[137009]
1vs6
automatically matched to 2AW4 2:1-46
complexed with mg
region 2:1-46
[120492]
1vs8
automatically matched to 2AW4 2:1-46
complexed with mg
region 2:1-46
[120506]
2aw4
complexed with mg
region 2:1-46
[127397]
2awb
automatically matched to 2AW4 2:1-46
complexed with mg
region 2:1-46
[127419]
2j28
automatically matched to 2AW4 2:1-46
complexed with mg
region 2:1-46
[137961]
Deinococcus radiodurans
[TaxId: 1299]
[161305] (10)
SQ
Q9RSH2
1-46
2zjr
Representative structure
complexed with mg
region 2:1-46
[154550]
1xbp
automatically matched to 2ZJR 2:1-46
complexed with mul
region 2:1-46
[145862]
2zjq
automatically matched to 2ZJR 2:1-46
region 2:1-46
[154518]
3cf5
automatically matched to 2ZJR 2:1-46
complexed with mg, txx
region 2:1-46
[156535]
2zjp
automatically matched to 2ZJR 2:1-46
complexed with mg, nsh, zn
region 2:1-46
[154487]
3dll
automatically matched to 2ZJR 2:1-46
complexed with mg, zld, zn
region 2:1-46
[157776]
1yl3
automatically matched to 2ZJR 2:1-46
region 7:1-46
[144694]
2b66
automatically matched to 2ZJR 2:1-46
region 7:1-46
[144957]
2b9n
automatically matched to 2ZJR 2:1-46
region 7:1-46
[144970]
2b9p
automatically matched to 2ZJR 2:1-46
region 7:1-46
[144979]
Thermus thermophilus
[TaxId: 274]
[161306] (11)
SQ
P80340
1-49
2j01
Representative structure
region 7:1-49
[145562]
2j03
automatically matched to 2J01 7:1-49
complexed with lys
region 7:1-49
[145589]
3d5b
automatically matched to 2J01 7:1-49
complexed with mg
region 7:1-48
[157356]
3d5d
automatically matched to 2J01 7:1-49
complexed with mg
region 7:1-48
[157386]
2v47
automatically matched to 2J01 7:1-49
region 7:1-49
[152508]
2v49
automatically matched to 2J01 7:1-49
region 7:1-49
[152544]
1vsp
automatically matched to 2J01 7:1-49
region z:1-48
[145801]
2hgq
automatically matched to 2J01 7:1-49
region 6:1-49
[145334]
1vsa
automatically matched to 2J01 7:1-49
region z:1-48
[144533]
2hgj
automatically matched to 2J01 7:1-49
region 6:1-49
[145302]
2hgu
automatically matched to 2J01 7:1-49
region 6:1-49
[145366]
Ribosomal protein S21p
[161307] (1)
non-globular, mainly alpha-helical
Ribosomal protein S21p
[161308] (1)
Ribosomal protein S21p
[161309] (1)
Pfam 01165
Ribosomal protein S21, RpsU [161310]
Escherichia coli
[TaxId: 562]
[161311] (24)
SQ
P68679
4-54
2qal
automatically matched to 2AVY U:3-53
complexed with mg, nmy
region u:3-53
[150233]
2qan
automatically matched to 2AVY U:3-53
complexed with mg, nmy
region u:3-53
[150287]
2qbf
automatically matched to 2AVY U:3-53
complexed with mg
region u:3-53
[150507]
2qbd
automatically matched to 2AVY U:3-53
complexed with mg
region u:3-53
[150453]
1vs5
automatically matched to 2AVY U:3-53
complexed with ksg, mg
region u:3-53
[144455]
3df1
automatically matched to 2AVY U:3-53
complexed with hyg, mg
region u:3-53
[157623]
3df3
automatically matched to 2AVY U:3-53
complexed with hyg, mg
region u:3-53
[157677]
1vs7
automatically matched to 2AVY U:3-53
complexed with ksg, mg
region u:3-53
[144496]
2qoy
automatically matched to 2AVY U:3-53
complexed with mg, nmy, scm
region u:3-53
[151110]
2qp0
automatically matched to 2AVY U:3-53
complexed with mg, nmy, scm
region u:3-53
[151163]
2avy
Representative structure
complexed with mg
region u:3-53
[144862]
2aw7
automatically matched to 2AVY U:3-53
complexed with mg
region u:3-53
[144905]
2qb9
automatically matched to 2AVY U:3-53
complexed with lll, mg
region u:3-53
[150347]
2qbb
automatically matched to 2AVY U:3-53
complexed with lll, mg
region u:3-53
[150400]
2i2p
automatically matched to 2AVY U:3-53
complexed with mg
region u:3-53
[145440]
2i2u
automatically matched to 2AVY U:3-53
complexed with mg
region u:3-53
[145482]
2qbh
automatically matched to 2AVY U:3-53
complexed with lll, mg
region u:3-53
[150561]
2qbj
automatically matched to 2AVY U:3-53
complexed with lll, mg
region u:3-53
[150615]
2qou
automatically matched to 2AVY U:3-53
complexed with mg, scm
region u:3-53
[151004]
2qow
automatically matched to 2AVY U:3-53
complexed with mg, scm
region u:3-53
[151057]
2z4m
automatically matched to 2AVY U:3-53
complexed with mg, par
region u:3-53
[154125]
2vho
automatically matched to 2AVY U:3-53
complexed with mg
region u:3-53
[153143]
2z4k
automatically matched to 2AVY U:3-53
complexed with mg, par
region u:3-53
[154071]
2vhp
automatically matched to 2AVY U:3-53
complexed with mg
region u:3-53
[153165]
Retinoblastoma-associated protein RB1 fragments
[144325] (1)
Retinoblastoma-associated protein RB1 fragments
[144326] (1)
uperfamily
Retinoblastoma-associated protein RB1 fragments
[144327] (1)
Retinoblastoma-associated protein RB1 fragments [144328]
Human (Homo sapiens)
[TaxId: 9606]
[144329] (1)
SQ
P06400
829-872
2aze
near C-terminal fragment bound to the E2F1-DP1 heterodimer
region c:829-872
[127607]
Genome linked protein vpg
[144330] (1)
Genome linked protein vpg
[144331] (1)
uperfamily
Genome linked protein vpg
[144332] (1)
PfamB 000297
Genome linked protein vpg [144333]
synthetic
[144334] (2)
2bbl
region a:1-22
[128277]
2bbp
region a:1-22
[128278]
Programmed cell death protein 5 fragments
[144335] (1)
Programmed cell death protein 5 fragments
[144336] (1)
uperfamily
Programmed cell death protein 5 fragments
[144337] (1)
Programmed cell death protein 5 fragments [144338]
Human (Homo sapiens)
[TaxId: 9606]
[144339] (1)
SQ
O14737
1-26
1yyb
N-terminal fragment, stable alpha-helix in isolation; not a part of the globular structure (PDB 2cru)
region a:1-26
[124211]
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Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright
© 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk