Structural Classification of Proteins
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Family: Transmembrane helical fragments

the member of this family may be not related

Lineage:

  1. Root: scop
  2. Class: Peptides [58231]
    Peptides and fragments. Not a true class
  3. Fold: Transmembrane helical fragments [58517]
  4. Superfamily: Transmembrane helical fragments [58518]
    link to SUPERFAMILY database - Superfamily
  5. Family: Transmembrane helical fragments [58519]
    the member of this family may be not related

Protein Domains:

  1. Bacteriorhodopsin fragments [58520]
    1. Archaeon Halobacterium halobium [TaxId: 2242] [58521] (3) picpic
  2. Rhodopsin fragments [58522]
    1. Synthetic, based on Bos taurus sequence [58523] (6) picpic
  3. Band 3 [58524]
    1. Synthetic peptides based on human band 3 sequence [58525] (9) picpic
  4. Pulmonary surfactant-associated polypeptide C (SP-C) [58526]
    1. Pig (Sus scrofa) [TaxId: 9823] [58527] (1) picpic
  5. Surfactant Protein B (SP-B) miniprotein constructs [58528]
    1. Synthetic, based on Homo sapiens sequence [58529] (7) picpic
      SQ P07988 208-225,263-278
  6. beta-Adrenoreceptor [58530]
    1. Turkey (Meleagris gallopavo) [TaxId: 9103] [58531] (1) picpic
  7. Dimeric transmembrane domain of glycophorin A [58532]
    right-hand twisted coiled coil
    1. Human (Homo sapiens) [TaxId: 9606] [58533] (1) picpic
  8. F1F0 ATP synthase subunit C fragments [58534]
    1. Escherichia coli [TaxId: 562] [58535] (1) picpic
  9. Membrane domain of the subunit b of ATP synthase [58536]
    1. Escherichia coli [TaxId: 562] [58537] (1) picpic
  10. alpha-subunit of nicotinic acetylcholine receptor [58538]
    M3 transmembrane segment
    1. Synthetic, based on Torpedo californica sequence [58539] (1) picpic
  11. Membrane spanning segment 2 (M2) of the acetylcholine receptor [58540]
    1. Rat (Rattus norvegicus) [TaxId: 10116] [58541] (2) picpic
    2. Pacific electric ray (Torpedo californica) [TaxId: 7787] [58542] (2) picpic
  12. Transmembrane segment 2 of NMDA receptor NR1 [58543]
    1. Human (Homo sapiens) [TaxId: 9606] [58544] (1) picpic
  13. Cystic fibrosis transmembrane conductance regulator [58545]
    1. Synthetic [58546] (4) picpic
  14. Second repeat (is2mic) from voltage-gated sodium channel [58547]
    1. Synthetic, based on Rattus norvegicus sequence [58548] (1) picpic
  15. Cytoplasmic domain of p23 [58549]
    1. Synthetic, based on Oryctolagus cuniculus sequence [58550] (2) picpic
  16. Active domain of protein icp47 [58551]
    1. Herpes simplex virus type 1, strain 17 [TaxId: 10298] [58552] (1) picpic
  17. fragment of hepatitis C envelope glycoprotein E (residues 350-370) [58553]
    1. Synthetic [58554] (1) picpic
  18. Neu/erbb-2 membrane spanning segment [64627]
    1. Synthetic, based on Rattus norvegicus sequence [64628] (1) picpic
  19. Membrane binding peptide of semliki forest virus mRNA capping enzyme nsp1 [64629]
    1. Synthetic [64630] (1) picpic
  20. Sarcolipin [70008]
    1. Synthetic [70009] (1) picpic
  21. Potassium channel fragment L45 [75743]
    1. Fruit fly (Drosophila melanogaster) [TaxId: 7227] [75744] (2) picpic
  22. Amphipathic domain of YopD [75745]
    1. Synthetic, Yersinia pestis-based [75746] (1) picpic
  23. Matrix protein M2 transmembrane peptide [82976]
    1. Synthetic, Inluenza A virus-based [82977] (2) picpic
    2. Influenza A virus [TaxId: 11320] [161299] (1) picpic
    3. synthetic construct [161300] (8) picpic
  24. N-terminal membrane anchor of the glucose-specific IIa component [90284]
    1. Escherichia coli [TaxId: 562] [90285] (1) picpic
      amphipathic helix; this region is partly disordered in the crystal structure of the whole protein (d1gl)a CH F
  25. Pheromone alpha factor receptor [103731]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [103732] (1) picpic
  26. Glycine receptor alpha-1 chain [103733]
    1. Human (Homo sapiens) [TaxId: 9606] [103734] (2) picpic
      SQ P23415 281-337
  27. Vpu protein [103735]
    1. Human immunodeficiency virus type 1, HIV-1 [TaxId: 11676] [103736] (3) picpic
  28. Membrane anchor domain of the nonstructural protein 5a (NS5a) [111509]
    1. Hepatitis C virus, HCV [TaxId: 11103] [111510] (5) picpic
      SQ P27958 1972-2003
  29. ASLV fusion peptide [118400]
    1. Rous sarcoma virus [TaxId: 11886] [118401] (1) picpic
      SQ P03397 418-445
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk