Class: Peptides

Peptides and fragments. Not a true class

Lineage:

1. Root: scop
2. Class: Peptides [58231]
   Peptides and fragments. Not a true class

Folds:

1. Membrane ion channel-forming peptide antibiotics containing D-aminoacids [58232] (1)
   1. Membrane ion channel-forming peptide antibiotics containing D-aminoacids [58233] (2)
      uperfamily
      1. Gramicidin [58234] (1)
      2. Peptaibol [58237] (8)
2. Lantibiotic peptides [58243] (1)
   peptide antibiotic
   1. Lantibiotic peptides [58244] (3)
      uperfamily
      1. Actagardine [58245] (1)
      2. Mersacidin [58248] (1)
      3. Nisin [111494] (1)
3. Leucocin-like bacteriocin [100898] (1)
   consists of a conserved, disulfide-containing N-terminal region (forming a beta-sheet) and a C-terminal helix
   1. Leucocin-like bacteriocin [100899] (1)
      uperfamily
      1. Leucocin-like bacteriocin [100900] (3)
4. Antimicrobial beta-hairpin [58251] (1)
   contains beta-hairpin crosslinked by disulfide bridge(s)
   1. Antimicrobial beta-hairpin [58252] (8)
      not a true superfamily
      uperfamily
      1. Insect defense peptide thanatin [58256] (1)
      2. Androctonin [58259] (1)
      3. Gomesin [75725] (1)
      4. Tachyplesin I [82958] (2)
      5. theta defensin-like [58262] (2)
      6. Lactoferricin B (lfcinb) [58265] (1)
      7. Hepcidin [82961] (2)
      8. Cyclic trypsin inhibitor STFI-1 [90265] (1)
5. Antimicrobial helix [58268] (1)
   antibiotic peptide
   1. Antimicrobial helix [58269] (5)
      not a true superfamily
      uperfamily
      1. Magainin [58270] (2)
      2. Moricin [75728] (2)
      3. Tachykinin peptides [82964] (3)
      4. Cytotoxic linear peptide IsCT [118386] (1)
      5. Distinctin [144312] (2)
6. Macrocyclic bacteriocins [58278] (1)
   macrocyclic antimicrobial peptide; bacteriocin
   1. Macrocyclic bacteriocins [58279] (2)
      uperfamily
      1. Microcin J25 [58280] (1)
      2. Subtilosin A [111498] (1)
         unusual posttranslational modifications linking cysteine sulfurs to alpha-carbons
7. Peptide hormones [58283] (1)
   contains one alpha-helix
   1. Peptide hormones [58284] (1)
      this is not a true superfamily
      uperfamily
      1. Peptide hormones [58285] (27)
8. Angiotensin [90269] (1)
   1. Angiotensin [90270] (1)
      uperfamily
      1. Angiotensin [90271] (2)
9. delta toxin-like [58307] (3)
   single alpha helix
   1. delta-Toxin [58308] (1)
      uperfamily
      1. delta-Toxin [58309] (1)
   2. Antimicrobial peptide HP(2-20) [90276] (1)
      uperfamily
      1. Antimicrobial peptide HP(2-20) [90277] (1)
   3. Anticancer peptides [118391] (1)
      uperfamily
      1. Anticancer peptides [118392] (1)
10. PSP1-like [58312] (1)
    1. PSP1-like [58313] (1)
       uperfamily
       1. PSP1-like [58314] (8)
11. Arg-rich RNA binding peptides [58321] (7)
    1. 30S ribosomal protein THX [58322] (1)
       uperfamily
       1. 30S ribosomal protein THX [58323] (1)
    2. HIV-1 REV fragments [58326] (1)
       uperfamily
       1. HIV-1 REV fragments [58327] (1)
    3. RSG-1.2 peptide [58330] (1)
       uperfamily
       1. RSG-1.2 peptide [58331] (1)
    4. TAT peptides [58334] (1)
       uperfamily
       1. TAT peptides [58335] (2)
    5. Box B RNA-binding N peptide [58339] (1)
       uperfamily
       1. Box B RNA-binding N peptide [58340] (4)
    6. HTLV-1 peptide [58344] (1)
       uperfamily
       1. HTLV-1 peptide [58345] (1)
    7. Ilarvirus coat protein N-terminal fragment [118396] (1)
       uperfamily
       1. Ilarvirus coat protein N-terminal fragment [118397] (1)
          N-terminal part of Pfam 01787; RNA-binding helix
12. DNA-binding domains of HMG-I(Y) [58348] (1)
    1. DNA-binding domains of HMG-I(Y) [58349] (1)
       uperfamily
       1. DNA-binding domains of HMG-I(Y) [58350] (1)
13. VPR protein fragments [58353] (1)
    1. VPR protein fragments [58354] (1)
       uperfamily
       1. VPR protein fragments [58355] (1)
14. Inactivation gate of potassium and sodium channels [58358] (1)
    1. Inactivation gate of potassium and sodium channels [58359] (1)
       uperfamily
       1. Inactivation gate of potassium and sodium channels [58360] (5)
          it is not a true family
15. Coagulation factor VIII, membrane-binding peptide [58368] (1)
    1. Coagulation factor VIII, membrane-binding peptide [58369] (1)
       uperfamily
       1. Coagulation factor VIII, membrane-binding peptide [58370] (1)
16. Phosphocholine cytidylyltransferase membrane-binding peptides [58373] (1)
    1. Phosphocholine cytidylyltransferase membrane-binding peptides [58374] (1)
       uperfamily
       1. Phosphocholine cytidylyltransferase membrane-binding peptides [58375] (1)
17. Parathyroid hormone fragments (residues between 1 and 39) [58378] (1)
    1. Parathyroid hormone fragments (residues between 1 and 39) [58379] (1)
       uperfamily
       1. Parathyroid hormone fragments (residues between 1 and 39) [58380] (3)
18. Corticotropin releasing hormone [58384] (1)
    1. Corticotropin releasing hormone [58385] (1)
       uperfamily
       1. Corticotropin releasing hormone [58386] (3)
19. Liposaccharide-binding protein CAP18 (residues 106-137) [58389] (1)
    1. Liposaccharide-binding protein CAP18 (residues 106-137) [58390] (1)
       uperfamily
       1. Liposaccharide-binding protein CAP18 (residues 106-137) [58391] (1)
20. Polymorphic antigen SPAM-H1 (residues 90-127) [58394] (1)
    1. Polymorphic antigen SPAM-H1 (residues 90-127) [58395] (1)
       uperfamily
       1. Polymorphic antigen SPAM-H1 (residues 90-127) [58396] (1)
21. Insect toxins [58399] (1)
    1. Insect toxins [58400] (2)
       uperfamily
       1. Mellitin-like toxins [58401] (2)
       2. Poneratoxin (Pac-Tx) [103712] (1)
22. Tertiapin [58404] (1)
    small disulfide-rich peptide
    1. Tertiapin [58405] (1)
       uperfamily
       1. Tertiapin [58406] (1)
23. Antifreeze polypeptide HPLC-6 [58409] (1)
    1. Antifreeze polypeptide HPLC-6 [58410] (1)
       uperfamily
       1. Antifreeze polypeptide HPLC-6 [58411] (1)
24. Troponin I fragments [58414] (1)
    1. Troponin I fragments [58415] (1)
       uperfamily
       1. Troponin I fragments [58416] (3)
25. Pilin fragments [58420] (1)
    1. Pilin fragments [58421] (1)
       uperfamily
       1. Pilin fragments [58422] (3)
26. RP71935 [58427] (1)
    1. RP71935 [58428] (1)
       uperfamily
       1. RP71935 [58429] (1)
27. Atrial natriuretic peptide [58432] (1)
    1. Atrial natriuretic peptide [58433] (1)
       uperfamily
       1. Atrial natriuretic peptide [58434] (1)
28. Compstatin [58437] (1)
    1. Compstatin [58438] (1)
       uperfamily
       1. Compstatin [58439] (1)
29. Membrane-bound antimicrobial peptides [58442] (1)
    1. Membrane-bound antimicrobial peptides [58443] (1)
       uperfamily
       1. Membrane-bound antimicrobial peptides [58444] (2)
          no or little secondary structure
30. Endothelin-like [58449] (1)
    small disulfide-rich
    1. Endothelin-like [58450] (1)
       uperfamily
       1. Endothelin-like [58451] (3)
31. Heat-stable enterotoxin (HSE) [58457] (1)
    1. Heat-stable enterotoxin (HSE) [58458] (1)
       uperfamily
       1. Heat-stable enterotoxin (HSE) [58459] (2)
          short disulfide-bound peptide
32. Conotoxins [58464] (1)
    disulfide-rich fold
    1. Conotoxins [58465] (7)
       all apart omega class; it is not a true superfamily
       uperfamily
       1. mu-conotoxin [58466] (4)
       2. alpha-conotoxin [58471] (11)
          13-16 residue peptide with 2 disulfides
       3. Alpha-a-conotoxin [58488] (2)
       4. psi-conotoxin [58491] (2)
       5. Conotoxin tiA [75733] (1)
       6. Conotoxin mrIB [75736] (1)
       7. Delta-conotoxin [103723] (1)
33. Conantokin [58494] (1)
    1. Conantokin [58495] (2)
       gamma-carboxyglutamic acid (GLA)-rich peptide; active conformation may be stabilized by metal ions
       uperfamily
       1. Conantokin G (conatoxin G) [58496] (1)
       2. Conantokin-T [58499] (1)
34. Contryphan-R [58502] (1)
    1. Contryphan-R [58503] (1)
       uperfamily
       1. Contryphan-R [58504] (1)
35. Kappa-hefutoxin-like [58507] (2)
    hairpin of two short helices crosslinked with two disulfides
    1. Immunodominant region of protein G of BRSV [58508] (1)
       uperfamily
       1. Immunodominant region of protein G of BRSV [58509] (2)
    2. Potassium channel toxins [75739] (1)
       uperfamily
       1. Potassium channel toxins [75740] (1)
36. Penaeidin-3a [103726] (1)
    1. Penaeidin-3a [103727] (1)
       uperfamily
       1. Penaeidin-3a [103728] (1)
37. Bradykinin [58512] (1)
    1. Bradykinin [58513] (1)
       uperfamily
       1. Bradykinin [58514] (2)
38. Transmembrane helical fragments [58517] (1)
    1. Transmembrane helical fragments [58518] (1)
       uperfamily
       1. Transmembrane helical fragments [58519] (32)
          the member of this family may be not related
39. Topogenic peptides [58555] (4)
    1. Ferredoxin chloroplastic transit peptide [58556] (1)
       uperfamily
       1. Ferredoxin chloroplastic transit peptide [58557] (1)
    2. Vacuolar targeting peptide from NA-PROPI (residues 29-54) [58560] (1)
       uperfamily
       1. Vacuolar targeting peptide from NA-PROPI (residues 29-54) [58561] (1)
    3. Microcin leader peptide [58564] (1)
       uperfamily
       1. Microcin leader peptide [58565] (1)
    4. ATP synthase beta chain, mitochondrial prepeptide [103737] (1)
       uperfamily
       1. ATP synthase beta chain, mitochondrial prepeptide [103738] (1)
40. Phospholamban fragments [58568] (1)
    1. Phospholamban fragments [58569] (1)
       uperfamily
       1. Phospholamban fragments [58570] (3)
41. Influenza hemagglutinin fragments [64631] (1)
    1. Influenza hemagglutinin fragments [64632] (1)
       uperfamily
       1. Influenza hemagglutinin fragments [64633] (2)
42. Fragments of bowman-birk inhibitor [58574] (1)
    1. Fragments of bowman-birk inhibitor [58575] (1)
       uperfamily
       1. Fragments of bowman-birk inhibitor [58576] (1)
43. Fragments of apolipoproteins [58579] (1)
    1. Fragments of apolipoproteins [58580] (1)
       uperfamily
       1. Fragments of apolipoproteins [58581] (10)
44. Transactivation protein TAT [58593] (1)
    1. Transactivation protein TAT [58594] (1)
       uperfamily
       1. Transactivation protein TAT [58595] (2)
45. Proline pipe [58599] (1)
    1. Proline pipe [58600] (1)
       uperfamily
       1. Proline pipe [58601] (1)
46. Amyloid peptides [58604] (1)
    1. Amyloid peptides [58605] (1)
       uperfamily
       1. Amyloid peptides [58606] (5)
47. Gelsolin fragment (residues 150-169) [58609] (1)
    1. Gelsolin fragment (residues 150-169) [58610] (1)
       uperfamily
       1. Gelsolin fragment (residues 150-169) [58611] (1)
48. Acetylcholine receptor fragment (residues alpha 67-76) [58614] (1)
    1. Acetylcholine receptor fragment (residues alpha 67-76) [58615] (1)
       uperfamily
       1. Acetylcholine receptor fragment (residues alpha 67-76) [58616] (1)
49. Thrombomodulin EGF domain fragment (residues 409-426) [58619] (1)
    1. Thrombomodulin EGF domain fragment (residues 409-426) [58620] (1)
       uperfamily
       1. Thrombomodulin EGF domain fragment (residues 409-426) [58621] (1)
50. C-terminal fragment of thermolysin [63387] (1)
    1. C-terminal fragment of thermolysin [63388] (1)
       uperfamily
       1. C-terminal fragment of thermolysin [63389] (1)
51. Capsid protein major homology region peptide analog [58629] (1)
    1. Capsid protein major homology region peptide analog [58630] (1)
       uperfamily
       1. Capsid protein major homology region peptide analog [58631] (2)
52. CD4 and CD8 receptor regions [58635] (1)
    1. CD4 and CD8 receptor regions [58636] (1)
       uperfamily
       1. CD4 and CD8 receptor regions [58637] (2)
          interact with proto-oncogene tyrosine-protein kinase lck
53. Proto-oncogene tyrosine-protein kinase lck CD4/CD8 interacting region [103748] (1)
    1. Proto-oncogene tyrosine-protein kinase lck CD4/CD8 interacting region [103749] (1)
       uperfamily
       1. Proto-oncogene tyrosine-protein kinase lck CD4/CD8 interacting region [103750] (1)
54. Heparin binding site of non collagenous domain I (nc1) of collagen facit xiv [58640] (1)
    1. Heparin binding site of non collagenous domain I (nc1) of collagen facit xiv [58641] (1)
       uperfamily
       1. Heparin binding site of non collagenous domain I (nc1) of collagen facit xiv [58642] (1)
55. GroES fragments [58645] (1)
    1. GroES fragments [58646] (1)
       uperfamily
       1. GroES fragments [58647] (2)
56. cAMP and cGMP phosphodiesterase (PDE) fragments [58650] (1)
    1. cAMP and cGMP phosphodiesterase (PDE) fragments [58651] (1)
       uperfamily
       1. cAMP and cGMP phosphodiesterase (PDE) fragments [58652] (2)
          not a true family
57. HIV-1 Nef protein fragments [58657] (1)
    1. HIV-1 Nef protein fragments [58658] (1)
       uperfamily
       1. HIV-1 Nef protein fragments [58659] (1)
58. HIV-1 envelope gp120 protein fragments [58662] (1)
    1. HIV-1 envelope gp120 protein fragments [58663] (1)
       uperfamily
       1. HIV-1 envelope gp120 protein fragments [58664] (2)
59. HIV-1 gp41 fragments [70010] (1)
    1. HIV-1 gp41 fragments [70011] (1)
       uperfamily
       1. HIV-1 gp41 fragments [70012] (4)
60. Hepatitis C virus N-terminal capsid protein fragment 2-45 [58667] (1)
    1. Hepatitis C virus N-terminal capsid protein fragment 2-45 [58668] (1)
       uperfamily
       1. Hepatitis C virus N-terminal capsid protein fragment 2-45 [58669] (1)
61. P27(KIP1) fragment 22-106 [58672] (1)
    1. P27(KIP1) fragment 22-106 [58673] (1)
       uperfamily
       1. P27(KIP1) fragment 22-106 [58674] (1)
62. Transducin alpha-1 subunit rhodopsin binding domain (res. 340-350) [58677] (1)
    1. Transducin alpha-1 subunit rhodopsin binding domain (res. 340-350) [58678] (1)
       uperfamily
       1. Transducin alpha-1 subunit rhodopsin binding domain (res. 340-350) [58679] (1)
63. Transducin gamma-t1 subunit rhodopsin bound fragment (res. 60-71) [90290] (1)
    1. Transducin gamma-t1 subunit rhodopsin bound fragment (res. 60-71) [90291] (1)
       uperfamily
       1. Transducin gamma-t1 subunit rhodopsin bound fragment (res. 60-71) [90292] (1)
64. alpha-lactalbumin peptide model [58682] (1)
    1. alpha-lactalbumin peptide model [58683] (1)
       uperfamily
       1. alpha-lactalbumin peptide model [58684] (1)
65. Coat protein-binding domain of bacteriophage P22 scaffolding protein [58687] (1)
    1. Coat protein-binding domain of bacteriophage P22 scaffolding protein [58688] (1)
       uperfamily
       1. Coat protein-binding domain of bacteriophage P22 scaffolding protein [58689] (1)
66. Immunoreceptor tyrosine kinase activation motif, ITAM [58692] (1)
    1. Immunoreceptor tyrosine kinase activation motif, ITAM [58693] (1)
       uperfamily
       1. Immunoreceptor tyrosine kinase activation motif, ITAM [58694] (1)
67. Integrin fragments [58697] (1)
    1. Integrin fragments [58698] (1)
       uperfamily
       1. Integrin fragments [58699] (3)
68. Human glutathione reductase (HGR) inhibitor [58702] (1)
    1. Human glutathione reductase (HGR) inhibitor [58703] (1)
       uperfamily
       1. Human glutathione reductase (HGR) inhibitor [58704] (1)
69. Small subunit C-terminal inhibitory peptide of ribonucleotide reductase [58707] (1)
    1. Small subunit C-terminal inhibitory peptide of ribonucleotide reductase [58708] (1)
       uperfamily
       1. Small subunit C-terminal inhibitory peptide of ribonucleotide reductase [58709] (1)
70. Histone H3 C-terminal fragment 130-135 [58712] (1)
    1. Histone H3 C-terminal fragment 130-135 [58713] (1)
       uperfamily
       1. Histone H3 C-terminal fragment 130-135 [58714] (1)
71. Smad-binding domain of Sara [58717] (1)
    1. Smad-binding domain of Sara [58718] (1)
       uperfamily
       1. Smad-binding domain of Sara [58719] (1)
72. Transactivation domain [81275] (1)
    1. Transactivation domain [74800] (1)
       uperfamily
       1. Transactivation domain [74801] (2)
73. Nuclear receptor coactivator Src-1 [100901] (1)
    1. Nuclear receptor coactivator Src-1 [48682] (1)
       uperfamily
       1. Nuclear receptor coactivator Src-1 [48683] (1)
74. TBP-binding domain of the transcription factor IIIb Brf1 subunit [90297] (1)
    1. TBP-binding domain of the transcription factor IIIb Brf1 subunit [90298] (1)
       uperfamily
       1. TBP-binding domain of the transcription factor IIIb Brf1 subunit [90299] (1)
75. BRCA2 BRC4 repeat [82985] (1)
    1. BRCA2 BRC4 repeat [82986] (1)
       uperfamily
       1. BRCA2 BRC4 repeat [82987] (1)
76. Peptide derived from p-21 activated kinase [58722] (1)
    1. Peptide derived from p-21 activated kinase [58723] (1)
       uperfamily
       1. Peptide derived from p-21 activated kinase [58724] (2)
77. pak1 autoregulatory domain [58728] (1)
    1. pak1 autoregulatory domain [58729] (1)
       uperfamily
       1. pak1 autoregulatory domain [58730] (1)
78. Translocated intimin receptor (tir) intimin-binding domain [58733] (1)
    1. Translocated intimin receptor (tir) intimin-binding domain [58734] (1)
       uperfamily
       1. Translocated intimin receptor (tir) intimin-binding domain [58735] (1)
79. Fragments of the L-type calcium channel alpha subunit Cav.1 (dihydropyridine receptor) [58738] (1)
    1. Fragments of the L-type calcium channel alpha subunit Cav.1 (dihydropyridine receptor) [58739] (1)
       uperfamily
       1. Fragments of the L-type calcium channel alpha subunit Cav.1 (dihydropyridine receptor) [58740] (4)
80. Tumor suppressor p53 fragments [58743] (1)
    1. Tumor suppressor p53 fragments [58744] (1)
       uperfamily
       1. Tumor suppressor p53 fragments [58745] (2)
81. FxFG nucleoporin repeats [58748] (1)
    1. FxFG nucleoporin repeats [58749] (1)
       uperfamily
       1. FxFG nucleoporin repeats [58750] (1)
82. beta-Catenine bound non-globular protein regions [58753] (1)
    1. beta-Catenine bound non-globular protein regions [58754] (1)
       uperfamily
       1. beta-Catenine bound non-globular protein regions [58755] (3)
83. Synaptobrevin-II fragments [58758] (1)
    1. Synaptobrevin-II fragments [58759] (1)
       uperfamily
       1. Synaptobrevin-II fragments [58760] (1)
84. VMIP-II fragment [58763] (1)
    1. VMIP-II fragment [58764] (1)
       uperfamily
       1. VMIP-II fragment [58765] (1)
85. Papillomavirus e6-interacting peptide of e6ap [58768] (1)
    1. Papillomavirus e6-interacting peptide of e6ap [58769] (1)
       uperfamily
       1. Papillomavirus e6-interacting peptide of e6ap [58770] (1)
86. Isolated insulin B-chain [58773] (1)
    1. Isolated insulin B-chain [58774] (1)
       uperfamily
       1. Isolated insulin B-chain [58775] (3)
87. N-terminal hairpin of ubiquitin (residues 1-17) [58778] (1)
    1. N-terminal hairpin of ubiquitin (residues 1-17) [58779] (1)
       uperfamily
       1. N-terminal hairpin of ubiquitin (residues 1-17) [58780] (1)
88. alpha-helical hairpin of p8mtcp1 [58783] (1)
    1. alpha-helical hairpin of p8mtcp1 [58784] (1)
       uperfamily
       1. alpha-helical hairpin of p8mtcp1 [58785] (1)
89. Syndecan-4 cytoplasmic domain [64638] (1)
    1. Syndecan-4 cytoplasmic domain [64639] (1)
       uperfamily
       1. Syndecan-4 cytoplasmic domain [64640] (1)
90. Actin-binding peptides [70017] (1)
    1. Actin-binding peptides [70018] (1)
       uperfamily
       1. Actin-binding peptides [70019] (2)
91. Pituitary adenylate cyclase activating polypeptide, pacap21 [64643] (1)
    1. Pituitary adenylate cyclase activating polypeptide, pacap21 [64644] (1)
       uperfamily
       1. Pituitary adenylate cyclase activating polypeptide, pacap21 [64645] (1)
92. Rack1 interaction site of the CAMP-specific phosphodiesterase pde4d5. [70022] (1)
    1. Rack1 interaction site of the CAMP-specific phosphodiesterase pde4d5. [70023] (1)
       uperfamily
       1. Rack1 interaction site of the CAMP-specific phosphodiesterase pde4d5. [70024] (1)
93. Prepeptide of 5-ALAS [70027] (1)
    1. Prepeptide of 5-ALAS [70028] (1)
       uperfamily
       1. Prepeptide of 5-ALAS [70029] (1)
94. Cholecystokinin receptor fragments [64648] (1)
    1. Cholecystokinin receptor fragments [64649] (1)
       uperfamily
       1. Cholecystokinin receptor fragments [64650] (2)
95. the cytoplasmic N-terminus of the bk beta-subunit kcnmb2 [70032] (1)
    1. the cytoplasmic N-terminus of the bk beta-subunit kcnmb2 [70033] (1)
       uperfamily
       1. the cytoplasmic N-terminus of the bk beta-subunit kcnmb2 [70034] (1)
96. Trypsin inhibitor SFTIf-1 [64653] (1)
    1. Trypsin inhibitor SFTIf-1 [64654] (1)
       uperfamily
       1. Trypsin inhibitor SFTIf-1 [64655] (1)
97. Prion protein fragments [70037] (1)
    1. Prion protein fragments [70038] (1)
       uperfamily
       1. Prion protein fragments [70039] (3)
98. Tumor suppressor protein p19-ARF fragment [70042] (1)
    1. Tumor suppressor protein p19-ARF fragment [70043] (1)
       uperfamily
       1. Tumor suppressor protein p19-ARF fragment [70044] (1)
99. Antennapedia homeodomain fragments [70047] (1)
    1. Antennapedia homeodomain fragments [70048] (1)
       uperfamily
       1. Antennapedia homeodomain fragments [70049] (1)
100. Sheep myeloid antimicrobial peptide SMAP29 based peptides [75751] (1)
     1. Sheep myeloid antimicrobial peptide SMAP29 based peptides [75752] (1)
        uperfamily
        1. Sheep myeloid antimicrobial peptide SMAP29 based peptides [75753] (1)
101. alpha-2a adrenergic receptor pepride t3-i2 [75756] (1)
     1. alpha-2a adrenergic receptor pepride t3-i2 [75757] (1)
        uperfamily
        1. alpha-2a adrenergic receptor pepride t3-i2 [75758] (1)
102. Catestatin fragment from chromogranin A [75761] (1)
     1. Catestatin fragment from chromogranin A [75762] (1)
        uperfamily
        1. Catestatin fragment from chromogranin A [75763] (1)
103. Bhpbr3, the Baff-binding loop of br3 embedded in a beta-hairpin peptide [82992] (1)
     1. Bhpbr3, the Baff-binding loop of br3 embedded in a beta-hairpin peptide [82993] (1)
        uperfamily
        1. Bhpbr3, the Baff-binding loop of br3 embedded in a beta-hairpin peptide [82994] (1)
104. N-terminal fragment of gastric H/K-ATPase [82997] (1)
     1. N-terminal fragment of gastric H/K-ATPase [82998] (1)
        uperfamily
        1. N-terminal fragment of gastric H/K-ATPase [82999] (1)
105. Barstar fragment [83002] (1)
     1. Barstar fragment [83003] (1)
        uperfamily
        1. Barstar fragment [83004] (1)
106. Cannabinoid receptor 1 (CB1) fragment [83007] (1)
     1. Cannabinoid receptor 1 (CB1) fragment [83008] (1)
        uperfamily
        1. Cannabinoid receptor 1 (CB1) fragment [83009] (1)
107. Ribosomal protein L10 [64658] (1)
     1. Ribosomal protein L10 [64659] (1)
        uperfamily
        1. Ribosomal protein L10 [64660] (1)
108. Ubiquitin interacting motif (UIM) [90302] (1)
     1. Ubiquitin interacting motif (UIM) [90303] (1)
        uperfamily
        1. Ubiquitin interacting motif (UIM) [90304] (2)
           amphipathic helix
109. Metal-binding peptide from MerP [103758] (1)
     1. Metal-binding peptide from MerP [103759] (1)
        uperfamily
        1. Metal-binding peptide from MerP [103760] (1)
110. Marinostatin, MstI [103763] (1)
     1. Marinostatin, MstI [103764] (1)
        uperfamily
        1. Marinostatin, MstI [103765] (1)
111. Cross-reactive peptides from 60S acidic ribosomal protein p2 [103768] (1)
     1. Cross-reactive peptides from 60S acidic ribosomal protein p2 [103769] (1)
        uperfamily
        1. Cross-reactive peptides from 60S acidic ribosomal protein p2 [103770] (2)
112. NTR, cyclotide processing element [111516] (1)
     1. NTR, cyclotide processing element [111517] (1)
        uperfamily
        1. NTR, cyclotide processing element [111518] (2)
113. HMG-box transcription factor 1 fragments [111523] (1)
     1. HMG-box transcription factor 1 fragments [111524] (1)
        uperfamily
        1. HMG-box transcription factor 1 fragments [111525] (1)
114. MAD protein fragments [111528] (1)
     1. MAD protein fragments [111529] (1)
        uperfamily
        1. MAD protein fragments [111530] (1)
115. Fragments of TNF receptors [111533] (1)
     1. Fragments of TNF receptors [111534] (1)
        uperfamily
        1. Fragments of TNF receptors [111535] (1)
116. Ezrin-radixin-moesin binding phosphoprotein 50 (ebp50) fragments [111538] (1)
     1. Ezrin-radixin-moesin binding phosphoprotein 50 (ebp50) fragments [111539] (1)
        uperfamily
        1. Ezrin-radixin-moesin binding phosphoprotein 50 (ebp50) fragments [111540] (1)
117. Ribosomal protein L34p [144320] (1)
     non-globular, mainly alpha-helical
     1. Ribosomal protein L34p [144321] (1)
        uperfamily
        1. Ribosomal protein L34p [144322] (3)
           Pfam 00468
118. Ribosomal protein S21p [161307] (1)
     non-globular, mainly alpha-helical
     1. Ribosomal protein S21p [161308] (1)
        1. Ribosomal protein S21p [161309] (1)
           Pfam 01165
119. Retinoblastoma-associated protein RB1 fragments [144325] (1)
     1. Retinoblastoma-associated protein RB1 fragments [144326] (1)
        uperfamily
        1. Retinoblastoma-associated protein RB1 fragments [144327] (1)
120. Genome linked protein vpg [144330] (1)
     1. Genome linked protein vpg [144331] (1)
        uperfamily
        1. Genome linked protein vpg [144332] (1)
           PfamB 000297
121. Programmed cell death protein 5 fragments [144335] (1)
     1. Programmed cell death protein 5 fragments [144336] (1)
        uperfamily
        1. Programmed cell death protein 5 fragments [144337] (1)

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk