Structural Classification of Proteins
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Family: Transmembrane helical fragments

the member of this family may be not related

Lineage:

  1. Root: scop
  2. Class: Peptides [58231]
    Peptides and fragments. Not a true class
  3. Fold: Transmembrane helical fragments [58517]
  4. Superfamily: Transmembrane helical fragments [58518]
    link to SUPERFAMILY database - Superfamily
  5. Family: Transmembrane helical fragments [58519]
    the member of this family may be not related

Protein Domains:

  1. Bacteriorhodopsin fragments [58520]
    1. Archaeon Halobacterium halobium [TaxId: 2242] [58521] (3)
      1. 1bha picpic
        1. chain a [46238] picpiclink
      2. 1bhb picpic
        1. chain a [46239] picpiclink
      3. 1bct picpic
        1. chain a [46237] picpiclink
  2. Rhodopsin fragments [58522]
    1. Synthetic, based on Bos taurus sequence [58523] (6)
      1. 1nzs picpic
        phosphorylated carboxy terminus (19 residues)
        1. chain a [92387] picpiclink
      2. 1eds picpic
        intradiskal loop 1
        1. chain a [46240] picpiclink
      3. 1edw picpic
        third intradiskal loop
        1. chain a [46241] picpiclink
      4. 1edv picpic
        2nd intradiskal loop
        1. chain a [46242] picpiclink
      5. 1edx picpic
        amino terminus (residues 1-40)
        1. chain a [46243] picpiclink
      6. 1fdf picpic
        helix 7
        1. chain a [46244] picpiclink
  3. Band 3 [58524]
    1. Synthetic peptides based on human band 3 sequence [58525] (9)
      1. 1bnx picpic
        1. chain a [46247] picpiclink
      2. 1bts picpic
        1. chain a [46246] picpiclink
      3. 1btt picpic
        1. chain a [46245] picpiclink
      4. 1btr picpic
        1. chain a [46249] picpiclink
      5. 1btq picpic
        1. chain a [46248] picpiclink
      6. 1bzk picpic
        1. chain a [46250] picpiclink
      7. 1bh7 picpic
        1. chain a [46252] picpiclink
      8. 2btb picpic
        1. chain a [46253] picpiclink
      9. 2bta picpic
        1. chain a [46251] picpiclink
  4. Pulmonary surfactant-associated polypeptide C (SP-C) [58526]
    1. Pig (Sus scrofa) [TaxId: 9823] [58527] (1)
      1. 1spf picpic
        1. chain a [46254] picpiclink
  5. Surfactant Protein B (SP-B) miniprotein constructs [58528]
    1. Synthetic, based on Homo sapiens sequence [58529] (7)
      SQ P07988 208-225,263-278
      1. 1kmr picpic
        1. chain a [72755] picpiclink
      2. 1rg4 picpic
        1. chain a [104925] picpiclink
      3. 2dwf picpic
        automatically matched to 2JOU A:1-34
        1. region a:1-34 [146598] picpiclink
      4. 1rg3 picpic
        1. chain a [104924] picpiclink
      5. 2jou picpic
        1. region a:1-34 [148161] picpiclink
      6. 1dfw picpic
        1. chain a [46255] picpiclink
      7. 1ssz picpic
        mini-B: an N-terminal/C-terminal construct
        1. chain a [105999] picpiclink
  6. beta-Adrenoreceptor [58530]
    1. Turkey (Meleagris gallopavo) [TaxId: 9103] [58531] (1)
      1. 1dep picpic
        1. chain a [46256] picpiclink
  7. Dimeric transmembrane domain of glycophorin A [58532]
    right-hand twisted coiled coil
    1. Human (Homo sapiens) [TaxId: 9606] [58533] (1)
      1. 1afo picpic
        1. chain a [46257] picpiclink
        2. chain b [46258] picpiclink
  8. F1F0 ATP synthase subunit C fragments [58534]
    1. Escherichia coli [TaxId: 562] [58535] (1)
      1. 1aty picpic
        residues 9-26, 52-79
        1. chain a [46259] picpiclink
  9. Membrane domain of the subunit b of ATP synthase [58536]
    1. Escherichia coli [TaxId: 562] [58537] (1)
      1. 1b9u picpic
        1. chain a [46260] picpiclink
  10. alpha-subunit of nicotinic acetylcholine receptor [58538]
    M3 transmembrane segment
    1. Synthetic, based on Torpedo californica sequence [58539] (1)
      1. 3mra picpic
        1. chain a [46261] picpiclink
  11. Membrane spanning segment 2 (M2) of the acetylcholine receptor [58540]
    1. Rat (Rattus norvegicus) [TaxId: 10116] [58541] (2)
      1. 1cek picpic
        1. chain a [46263] picpiclink
      2. 1a11 picpic
        1. chain a [46262] picpiclink
    2. Pacific electric ray (Torpedo californica) [TaxId: 7787] [58542] (2)
      1. 1dxz picpic
        1. chain a [46269] picpiclink
      2. 1eq8 picpic
        1. chain a [46264] picpiclink
        2. chain b [46265] picpiclink
        3. chain c [46266] picpiclink
        4. chain d [46267] picpiclink
        5. chain e [46268] picpiclink
  12. Transmembrane segment 2 of NMDA receptor NR1 [58543]
    1. Human (Homo sapiens) [TaxId: 9606] [58544] (1)
      1. 2nr1 picpic
        1. chain a [46270] picpiclink
  13. Cystic fibrosis transmembrane conductance regulator [58545]
    1. Synthetic [58546] (4)
      1. 1ckx picpic
        1. chain a [46272] picpiclink
      2. 1ckw picpic
        1. chain a [46271] picpiclink
      3. 1ckz picpic
        1. chain a [46274] picpiclink
      4. 1cky picpic
        1. chain a [46273] picpiclink
  14. Second repeat (is2mic) from voltage-gated sodium channel [58547]
    1. Synthetic, based on Rattus norvegicus sequence [58548] (1)
      1. 1qg9 picpic
        1. chain a [46275] picpiclink
  15. Cytoplasmic domain of p23 [58549]
    1. Synthetic, based on Oryctolagus cuniculus sequence [58550] (2)
      1. 1p23 picpic
        1. chain a [46276] picpiclink
        2. chain b [46277] picpiclink
        3. chain c [46278] picpiclink
        4. chain d [46279] picpiclink
      2. 1m23 picpic
        1. chain a [46280] picpiclink
  16. Active domain of protein icp47 [58551]
    1. Herpes simplex virus type 1, strain 17 [TaxId: 10298] [58552] (1)
      1. 1qlo picpic
        1. chain a [46281] picpiclink
  17. fragment of hepatitis C envelope glycoprotein E (residues 350-370) [58553]
    1. Synthetic [58554] (1)
      1. 1emz picpic
        1. chain a [46282] picpiclink
  18. Neu/erbb-2 membrane spanning segment [64627]
    1. Synthetic, based on Rattus norvegicus sequence [64628] (1)
      1. 1iij picpic
        1. chain a [62432] picpiclink
  19. Membrane binding peptide of semliki forest virus mRNA capping enzyme nsp1 [64629]
    1. Synthetic [64630] (1)
      1. 1fw5 picpic
        1. chain a [60057] picpiclink
  20. Sarcolipin [70008]
    1. Synthetic [70009] (1)
      1. 1jdm picpic
        1. chain a [66558] picpiclink
  21. Potassium channel fragment L45 [75743]
    1. Fruit fly (Drosophila melanogaster) [TaxId: 7227] [75744] (2)
      1. 1ho2 picpic
        1. chain a [70967] picpiclink
      2. 1ho7 picpic
        1. chain a [70972] picpiclink
  22. Amphipathic domain of YopD [75745]
    1. Synthetic, Yersinia pestis-based [75746] (1)
      1. 1kdl picpic
        1. chain a [72352] picpiclink
  23. Matrix protein M2 transmembrane peptide [82976]
    1. Synthetic, Inluenza A virus-based [82977] (2)
      1. 1nyj picpic
        the closed state structure by solid state NMR spectroscopy
        1. chain a [86404] picpiclink
        2. chain b [86405] picpiclink
        3. chain c [86406] picpiclink
        4. chain d [86407] picpiclink
      2. 1mp6 picpic
        1. chain a [79382] picpiclink
    2. Influenza A virus [TaxId: 11320] [161299] (1)
      1. 2rlf picpic
        automatically matched to d1mp6a_
        1. region a:23-46 [152155] picpiclink
    3. synthetic construct [161300] (8)
      1. 3bkd picpic
        automatically matched to d1mp6a_
        1. region a:22-46 [155345] picpiclink
      2. 3bkd picpic
        automatically matched to d1mp6a_
        1. region b:22-46 [155346] picpiclink
      3. 3bkd picpic
        automatically matched to d1mp6a_
        1. region c:22-46 [155347] picpiclink
      4. 3bkd picpic
        automatically matched to d1mp6a_
        1. region d:22-46 [155348] picpiclink
      5. 3bkd picpic
        automatically matched to d1mp6a_
        1. region e:22-46 [155349] picpiclink
      6. 3bkd picpic
        automatically matched to d1mp6a_
        1. region f:22-46 [155350] picpiclink
      7. 3bkd picpic
        automatically matched to d1mp6a_
        1. region g:22-46 [155351] picpiclink
      8. 3bkd picpic
        automatically matched to d1mp6a_
        1. region h:22-46 [155352] picpiclink
  24. N-terminal membrane anchor of the glucose-specific IIa component [90284]
    1. Escherichia coli [TaxId: 562] [90285] (1)
      amphipathic helix; this region is partly disordered in the crystal structure of the whole protein (d1gl)a CH F
      1. 1o53 picpic
        1. chain a [92481] picpiclink
  25. Pheromone alpha factor receptor [103731]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [103732] (1)
      1. 1pjd picpic
        6th transmembrane helix
        1. chain a [94759] picpiclink
  26. Glycine receptor alpha-1 chain [103733]
    1. Human (Homo sapiens) [TaxId: 9606] [103734] (2)
      SQ P23415 281-337
      1. 1vry picpic
        1. region a:1-57 [120488] picpiclink
      2. 1mot picpic
        2nd transmembrane helix
        1. chain a [91371] picpiclink
  27. Vpu protein [103735]
    1. Human immunodeficiency virus type 1, HIV-1 [TaxId: 11676] [103736] (3)
      1. 1pi7 picpic
        1. chain a [94704] picpiclink
      2. 1pi8 picpic
        1. chain a [94705] picpiclink
      3. 1pje picpic
        1. chain a [94760] picpiclink
  28. Membrane anchor domain of the nonstructural protein 5a (NS5a) [111509]
    1. Hepatitis C virus, HCV [TaxId: 11103] [111510] (5)
      SQ P27958 1972-2003
      1. 1r7g picpic
        1. chain a [104835] picpiclink
      2. 1r7c picpic
        1. chain a [104831] picpiclink
      3. 1r7d picpic
        1. chain a [104832] picpiclink
      4. 1r7e picpic
        1. chain a [104833] picpiclink
      5. 1r7f picpic
        1. chain a [104834] picpiclink
  29. ASLV fusion peptide [118400]
    1. Rous sarcoma virus [TaxId: 11886] [118401] (1)
      SQ P03397 418-445
      1. 1xnl picpic
        1. chain a [115602] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk