Class: Designed proteins

Experimental structures of proteins with essentially non-natural sequences. Not a true class

Lineage:

1. Root: scop
2. Class: Designed proteins [58788]
   Experimental structures of proteins with essentially non-natural sequences. Not a true class

Folds:

1. New fold designs [103774] (1)
   1. New fold designs [103775] (1)
      uperfamily
      1. alpha+beta folds [103776] (2)
         1. Top7 [103777]
            beta(2)-alpha-beta-alpha-beta(2); 2 layers: a/b; antiparallel beta-sheet: order 21354
            1. Synthetic, computationally designed sequence [103778] (1)
               1. 1qys
                  1. chain a [96603]
            2. unidentified [TaxId: 32644] [161312] (1)
               1. 2jvf
                  automatically matched to d1qysa_
                  1. region a:2-89 [148223]
2. In vitro evolution products [103779] (1)
   1. In vitro evolution products [103780] (1)
      uperfamily
      1. Function-directed selections [103781] (1)
         1. Artificial nucleotide binding protein (ANBP) [103782]
            binds ADP; contains zinc-binding site similar to that of the transcription factor GATA-1
            1. Synthetic [103783] (1)
               1. 1uw1
                  1. chain a [100069]
3. Hybrid and chimeric proteins [58789] (1)
   1. Hybrid and chimeric proteins [58790] (1)
      uperfamily
      1. Hybrid and chimeric proteins [58791] (3)
         1. Hybrid protein between chymotrypsin inhibitor CI-2 and helix E from subtilisin Carlsberg [58792]
            1. Barley (Hordeum vulgare), hiproly strain [TaxId: 4513] [58793] (1)
               1. 1cis
                  1. chain a [46375]
         2. Tmzip: a chimeric peptide model of the n-terminus of alpha tropomyosin [58794]
            dimeric coiled coil
            1. Synthetic, based on Rattus rattus sequence [58795] (1)
               1. 1tmz
                  1. chain a [46376]
                  2. chain b [46377]
         3. Genetically engineered molecular motor [58796]
            myosin II heavy chain fused to alpha-actinin spectrin-like repeats 1 and 2
            1. Dictyostelium discoideum [TaxId: 44689] [58797] (1)
               1. 1g8x
                  1. chain a [46378]
                  2. chain b [46379]
4. Amphiphilic (amphipathic) alpha helix [58798] (1)
   1. Amphiphilic (amphipathic) alpha helix [58799] (1)
      uperfamily
      1. Amphiphilic (amphipathic) alpha helix [58800] (3)
         1. Designed sequence 'Alpha 1' [58801]
            1. Synthetic [58802] (3)
               1. 3al1
                  racemic p1bar form
                  1. chain a [46380]
                  2. chain b [46381]
               2. 1byz
                  p1 form
                  1. chain a [46382]
                  2. chain b [46383]
                  3. chain c [46384]
                  4. chain d [46385]
               3. 1al1
                  1. chain a [46386]
         2. Model helical basic peptides [58803]
            1. Synthetic, based on human platelet factor 4 [58804] (3)
               1. 1dn3
                  1. chain a [46388]
               2. 1djf
                  1. chain a [46387]
               3. 1dng
                  1. chain a [46389]
         3. Octameric de novo designed peptide [83012]
            packing of helices in octamer is similar to that of the Uteroglobin-like dimer (see 2utg)
            1. Synthetic [83013] (1)
               1. 1l4x
                  1. chain a [77695]
                  2. chain b [77696]
                  3. chain c [77697]
                  4. chain d [77698]
                  5. chain e [77699]
                  6. chain f [77700]
                  7. chain g [77701]
                  8. chain h [77702]
5. Collagen-like peptides [58805] (1)
   1. Collagen-like peptides [58806] (1)
      uperfamily
      1. Collagen-like peptides [58807] (8)
         1. Collagen-like peptides [58808]
            1. Synthetic, (pro-pro-gly)9 [83014] (1)
               1. 1itt
                  high resolution structure
                  1. chain a [76788]
                  2. chain b [76789]
                  3. chain c [76790]
            2. Synthetic (pro-pro-gly)n [58809] (4)
               1. 1g9w
                  1. chain a [60403]
                  2. chain b [60404]
                  3. chain c [60405]
               2. 1a3j
                  1. chain a [46390]
                  2. chain b [46391]
                  3. chain c [46392]
               3. 1cag
                  1. chain a [46393]
                  2. chain b [46394]
                  3. chain c [46395]
               4. 1a3i
                  1. chain a [46396]
                  2. chain b [46397]
                  3. chain c [46398]
            3. Synthetic [(pro-hyp-gly)4-glu-lys-gly(pro-hyp-gly)5] [58810] (1)
               1. 1qsu
                  1. chain a [46399]
                  2. chain b [46400]
                  3. chain c [46401]
            4. Synthetic [(pro-hyp-gly)4-pg-(pro-hyp-gly)5] [103784] (1)
               contains a discontinuity in the repeating tripeptide sequence
               1. 1ei8
                  1. chain a [90447]
                  2. chain b [90448]
                  3. chain c [90449]
                  4. chain d [90450]
                  5. chain e [90451]
                  6. chain f [90452]
            5. Synthetic (contains biological sequence) [100902] (1)
               1. 1bkv
                  1. chain a [46402]
                  2. chain b [46403]
                  3. chain c [46404]
            6. Synthetic (contains integrin-binding sequence) [64663] (2)
               1. 1q7d
                  1. chain a [96032]
                  2. chain b [96033]
                  3. chain c [96034]
               2. 1dzi
                  complexed with co, nh2
                  1. chain b [59143]
                  2. chain c [59144]
                  3. chain d [59145]
            7. Synthetic, [(pro-pro-gly)10]3 triple helix model [70052] (2)
               1. 1k6f
                  1. chain a [68217]
                  2. chain b [68218]
                  3. chain c [68219]
                  4. chain d [68220]
                  5. chain e [68221]
                  6. chain f [68222]
               2. 1nay
                  foldon is a trimerisation domain of T4 fibritin
                  1. chain a [85502]
                  2. chain b [85503]
                  3. chain c [85504]
            8. Synthetic, (pro-hyp-gly)n [111543] (3)
               1. 1v6q
                  1. chain a [108398]
                  2. chain b [108399]
                  3. chain c [108400]
               2. 1v4f
                  1. chain a [108352]
                  2. chain b [108353]
                  3. chain c [108354]
               3. 1v7h
                  1. chain a [108403]
                  2. chain b [108404]
                  3. chain c [108405]
6. Coiled serine [58812] (1)
   1. Coiled serine [58813] (1)
      uperfamily
      1. Coiled serine [58814] (2)
         1. Coiled serine [58815]
            1. Synthetic [58816] (1)
               1. 1cos
                  1. chain a [46405]
                  2. chain b [46406]
                  3. chain c [46407]
            2. synthetic construct [161313] (1)
               1. 2jgo
                  automatically matched to d1cosa_
                  1. region a:1-29 [148051]
7. Designed trimeric coiled-coil [100903] (1)
   1. Designed trimeric coiled-coil [100904] (1)
      uperfamily
      1. Designed trimeric coiled-coil [100905] (4)
         not a true family
         1. Amyloidogenic design-1 [103785]
            1. synthetic [103786] (1)
               1. 1s9z
                  1. chain a [98768]
         2. VaLd trimeric coiled-coil [58820]
            1. Synthetic [58821] (1)
               1. 1coi
                  CASP2
                  1. chain a [46408]
         3. Unnamed design-1 [100906]
            1. Synthetic [64668] (1)
               1. 1hqj
                  1. chain a [61142]
                  2. chain b [61143]
                  3. chain c [61144]
                  4. chain d [61145]
                  5. chain e [61146]
                  6. chain f [61147]
                  7. chain g [61148]
                  8. chain h [61149]
                  9. chain i [61150]
                  10. chain j [61151]
                  11. chain k [61152]
                  12. chain l [61153]
         4. Unnamed design-2 [100907]
            1. Synthetic [75766] (1)
               1. 1kyc
                  1. chain a [73217]
8. Designed heterodimeric coiled-coil [58822] (1)
   1. Designed heterodimeric coiled-coil [58823] (1)
      uperfamily
      1. Designed heterodimeric coiled-coil [58824] (2)
         1. Designed heterodimeric leucine zipper [58825]
            1. Synthetic, GCN4-based [58826] (2)
               1. 1fmh
                  1. chain a [46409]
                  2. chain b [46410]
               2. 1u2u
                  1. chain a [112986]
                  2. chain b [112987]
         2. iaal-e3/k3 heterodimer [118404]
            1. synthetic [118405] (1)
               1. 1u0i
                  1. chain a [112920]
                  2. chain b [112921]
9. Thermostable heterotrimeric coiled coil [58827] (1)
   1. Thermostable heterotrimeric coiled coil [58828] (1)
      uperfamily
      1. Thermostable heterotrimeric coiled coil [58829] (1)
         1. Thermostable heterotrimeric coiled coil [58830]
            1. Synthetic [58831] (1)
               1. 1bb1
                  1. chain a [46411]
                  2. chain b [46412]
                  3. chain c [46413]
10. Designed four-helix bundle protein [58832] (1)
    1. Designed four-helix bundle protein [58833] (1)
       uperfamily
       1. Designed four-helix bundle protein [58834] (5)
          this is not a true family
          1. De novo designed protein s-824 [103787]
             single-chain four-helical protein
             1. Synthetic [103788] (1)
                1. 1p68
                   1. chain a [94158]
             2. unidentified [TaxId: 32644] [161314] (1)
                1. 2jua
                   automatically matched to d1p68a_
                   1. region a:1-102 [148212]
          2. DHP1 [58835]
             1. Synthetic non-biological source [58836] (1)
                1. 4hb1
                   1. chain a [46414]
          3. Artificial diiron protein [58837]
             dimeric alpha-hairpin fold
             1. Synthetic, different variants [58838] (15)
                1. 1jm0
                   1. chain a [66870]
                   2. chain b [66871]
                   3. chain c [66872]
                   4. chain d [66873]
                   5. chain e [66874]
                   6. chain f [66875]
                2. 1lt1
                   1. chain a [84690]
                   2. chain b [84691]
                   3. chain c [84692]
                   4. chain d [84693]
                   5. chain e [84694]
                   6. chain f [84695]
                   7. chain g [84696]
                   8. chain h [84697]
                3. 1mft
                   1. chain a [91262]
                   2. chain b [91263]
                4. 1jmb
                   1. chain a [66882]
                   2. chain b [66883]
                   3. chain c [66884]
                5. 1y47
                   automatically matched to 1U7J A:1-49
                   1. region a:1-46 [122610]
                6. 1y47
                   automatically matched to 1U7J A:1-49
                   1. region b:1-46 [122611]
                7. 1ec5
                   1. chain a [46421]
                   2. chain b [46422]
                   3. chain c [46423]
                8. 1ovr
                   1. chain a [104033]
                   2. chain b [104034]
                   3. chain c [104035]
                   4. chain d [104036]
                9. 1ovv
                   1. chain a [93616]
                   2. chain b [93617]
                   3. chain c [93618]
                   4. chain d [93619]
                   5. chain e [93620]
                   6. chain f [93621]
                10. 1ovu
                    1. chain a [93612]
                    2. chain b [93613]
                    3. chain c [93614]
                    4. chain d [93615]
                11. 1u7j
                    1. region a:1-49 [119617]
                12. 1u7m
                    1. region a:1-53 [119619]
                13. 1u7j
                    automatically matched to 1U7J A:1-49
                    1. region b:1-49 [119618]
                14. 1u7m
                    automatically matched to 1U7M A:1-53
                    1. region b:1-53 [119620]
                15. 1nvo
                    1. chain a [86265]
                    2. chain b [86266]
          4. Molecular maquette scaffold [83015]
             1. Synthetic [83016] (1)
                1. 1m3w
                   1. chain a [78575]
                   2. chain b [78576]
                   3. chain c [78577]
                   4. chain d [78578]
11. Designed single chain three-helix bundle [58839] (1)
    not a true fold: both possible topologies are created
    1. Designed single chain three-helix bundle [58840] (1)
       uperfamily
       1. Designed single chain three-helix bundle [58841] (3)
          1. De novo bundle (a3d) [58842]
             1. Synthetic [58843] (1)
                1. 2a3d
                   1. chain a [46424]
          2. Domain swapped dimer [58844]
             1. Synthetic [58845] (1)
                1. 1g6u
                   1. chain a [46425]
                   2. chain b [46426]
          3. Alpha3W [75767]
             de novo designed protein model of radical enzymes
             1. Synthetic [75768] (1)
                1. 1lq7
                   1. chain a [74183]
12. Peptide f (amphiphilic octadecapeptide) [58846] (1)
    1. Peptide f (amphiphilic octadecapeptide) [58847] (1)
       uperfamily
       1. Peptide f (amphiphilic octadecapeptide) [58848] (1)
          1. Peptide f (amphiphilic octadecapeptide) [58849]
             Designed sequence (EQLLKALEFLLKELLEKL),
             1. Synthetic [58850] (1)
                1. 1pef
                   1. chain a [46427]
13. Retro-GCN4 leucine zipper [58851] (1)
    1. Retro-GCN4 leucine zipper [58852] (1)
       uperfamily
       1. Retro-GCN4 leucine zipper [58853] (1)
          1. Retro-GCN4 leucine zipper [58854]
             1. Synthetic [58855] (1)
                1. 1c94
                   CASP3
                   1. chain a [46428]
                   2. chain b [46429]
14. Glytm1bzip [70053] (1)
    1. Glytm1bzip [70054] (1)
       uperfamily
       1. Glytm1bzip [70055] (1)
          1. Glytm1bzip [70056]
             a chimeric peptide model of tropomyosin and GCN4 coiled coils
             1. Chimeric (Rattus norvegicus) and (saccharomyces cerevisiae) [70057] (1)
                1. 1ihq
                   1. chain a [66144]
                   2. chain b [66145]
15. Zinc finger design [58856] (1)
    1. Zinc finger design [58857] (1)
       uperfamily
       1. Zinc finger design [58858] (11)
          1. Designed zinc finger protein [58859]
             1. Synthetic consensus sequence, non-biological source [58860] (1)
                1. 1mey
                   1. chain c [46430]
                   2. chain f [46431]
                   3. chain g [46432]
             2. Mus musculus [TaxId: 10090] [161315] (1)
                1. 2ee8
                   automatically matched to d1meyf_
                   1. region a:15-96 [146806]
             3. Homo sapiens [TaxId: 9606] [161316] (87)
                1. 2eqw
                   automatically matched to d1meyg_
                   1. region a:407-434 [146987]
                2. 2el5
                   automatically matched to d1meyg_
                   1. region a:6-33 [146886]
                3. 2emm
                   automatically matched to d1meyg_
                   1. region a:8-35 [146923]
                4. 2en0
                   automatically matched to d1meyg_
                   1. region a:6-33 [146938]
                5. 2el4
                   automatically matched to d1meyg_
                   1. region a:8-35 [146885]
                6. 2eok
                   automatically matched to d1meyg_
                   1. region a:6-33 [146955]
                7. 2epu
                   automatically matched to d1meyg_
                   1. region a:100-127 [146975]
                8. 2eq0
                   automatically matched to d1meyg_
                   1. region a:452-479 [146980]
                9. 2eq1
                   automatically matched to d1meyg_
                   1. region a:480-507 [146981]
                10. 2yu8
                    automatically matched to d1meyg_
                    1. region a:8-35 [153778]
                11. 2emf
                    automatically matched to d1meyg_
                    1. region a:8-35 [146916]
                12. 2emg
                    automatically matched to d1meyg_
                    1. region a:8-35 [146917]
                13. 2emv
                    automatically matched to d1meyg_
                    1. region a:8-35 [146934]
                14. 2emw
                    automatically matched to d1meyg_
                    1. region a:6-33 [146935]
                15. 2eoj
                    automatically matched to d1meyg_
                    1. region a:8-35 [146954]
                16. 2eop
                    automatically matched to d1meyg_
                    1. region a:8-35 [146959]
                17. 2eor
                    automatically matched to d1meyg_
                    1. region a:8-35 [146961]
                18. 2eoz
                    automatically matched to d1meyg_
                    1. region a:8-35 [146965]
                19. 2epx
                    automatically matched to d1meyg_
                    1. region a:471-496 [146978]
                20. 2eq4
                    automatically matched to d1meyg_
                    1. region a:451-478 [146984]
                21. 2ely
                    automatically matched to d1meyg_
                    1. region a:8-35 [146905]
                22. 2em9
                    automatically matched to d1meyg_
                    1. region a:8-35 [146912]
                23. 2en1
                    automatically matched to d1meyg_
                    1. region a:8-35 [146939]
                24. 2en6
                    automatically matched to d1meyg_
                    1. region a:8-35 [146943]
                25. 2eol
                    automatically matched to d1meyg_
                    1. region a:6-33 [146956]
                26. 2ep2
                    automatically matched to d1meyg_
                    1. region a:8-35 [146968]
                27. 2yrh
                    automatically matched to d1meyg_
                    1. region a:6-33 [153742]
                28. 2yte
                    automatically matched to d1meyg_
                    1. region a:6-33 [153761]
                29. 2ytp
                    automatically matched to d1meyg_
                    1. region a:8-35 [153771]
                30. 2em1
                    automatically matched to d1meyg_
                    1. region a:6-33 [146907]
                31. 2em2
                    automatically matched to d1meyg_
                    1. region a:8-35 [146908]
                32. 2eme
                    automatically matched to d1meyg_
                    1. region a:8-35 [146915]
                33. 2emh
                    automatically matched to d1meyg_
                    1. region a:8-35 [146918]
                34. 2emj
                    automatically matched to d1meyg_
                    1. region a:8-35 [146920]
                35. 2enf
                    automatically matched to d1meyg_
                    1. region a:8-35 [146947]
                36. 2eoe
                    automatically matched to d1meyg_
                    1. region a:8-35 [146950]
                37. 2eof
                    automatically matched to d1meyg_
                    1. region a:8-35 [146951]
                38. 2eoh
                    automatically matched to d1meyg_
                    1. region a:8-35 [146953]
                39. 2eov
                    automatically matched to d1meyg_
                    1. region a:8-35 [146962]
                40. 2ep1
                    automatically matched to d1meyg_
                    1. region a:8-35 [146967]
                41. 2epv
                    automatically matched to d1meyg_
                    1. region a:803-830 [146976]
                42. 2epw
                    automatically matched to d1meyg_
                    1. region a:915-942 [146977]
                43. 2epz
                    automatically matched to d1meyg_
                    1. region a:500-527 [146979]
                44. 2eq2
                    automatically matched to d1meyg_
                    1. region a:676-703 [146982]
                45. 2ysv
                    automatically matched to d1meyg_
                    1. region a:753-780 [153754]
                46. 2ytf
                    automatically matched to d1meyg_
                    1. region a:8-35 [153762]
                47. 2ytg
                    automatically matched to d1meyg_
                    1. region a:8-35 [153763]
                48. 2yti
                    automatically matched to d1meyg_
                    1. region a:8-35 [153765]
                49. 2ytj
                    automatically matched to d1meyg_
                    1. region a:8-35 [153766]
                50. 2ytq
                    automatically matched to d1meyg_
                    1. region a:9-35 [153772]
                51. 2yts
                    automatically matched to d1meyg_
                    1. region a:8-35 [153774]
                52. 2ytt
                    automatically matched to d1meyg_
                    1. region a:9-35 [153775]
                53. 2elz
                    automatically matched to d1meyg_
                    1. region a:10-35 [146906]
                54. 2em3
                    automatically matched to d1meyg_
                    1. region a:8-35 [146909]
                55. 2em6
                    automatically matched to d1meyg_
                    1. region a:9-35 [146910]
                56. 2em8
                    automatically matched to d1meyg_
                    1. region a:8-35 [146911]
                57. 2ema
                    automatically matched to d1meyg_
                    1. region a:8-35 [146913]
                58. 2emc
                    automatically matched to d1meyg_
                    1. region a:8-35 [146914]
                59. 2emk
                    automatically matched to d1meyg_
                    1. region a:8-35 [146921]
                60. 2emp
                    automatically matched to d1meyg_
                    1. region a:8-35 [146924]
                61. 2emy
                    automatically matched to d1meyg_
                    1. region a:8-35 [146936]
                62. 2emz
                    automatically matched to d1meyg_
                    1. region a:8-35 [146937]
                63. 2en3
                    automatically matched to d1meyg_
                    1. region a:8-35 [146941]
                64. 2ene
                    automatically matched to d1meyg_
                    1. region a:8-35 [146946]
                65. 2enh
                    automatically matched to d1meyg_
                    1. region a:8-35 [146948]
                66. 2eoo
                    automatically matched to d1meyg_
                    1. region a:8-35 [146958]
                67. 2eow
                    automatically matched to d1meyg_
                    1. region a:8-35 [146963]
                68. 2ep0
                    automatically matched to d1meyg_
                    1. region a:8-35 [146966]
                69. 2yrj
                    automatically matched to d1meyg_
                    1. region a:8-35 [153743]
                70. 2ytd
                    automatically matched to d1meyg_
                    1. region a:8-35 [153760]
                71. 2yth
                    automatically matched to d1meyg_
                    1. region a:8-35 [153764]
                72. 2ytk
                    automatically matched to d1meyg_
                    1. region a:8-35 [153767]
                73. 2ytn
                    automatically matched to d1meyg_
                    1. region a:8-35 [153769]
                74. 2yto
                    automatically matched to d1meyg_
                    1. region a:8-35 [153770]
                75. 2emi
                    automatically matched to d1meyg_
                    1. region a:8-35 [146919]
                76. 2eml
                    automatically matched to d1meyg_
                    1. region a:8-35 [146922]
                77. 2eog
                    automatically matched to d1meyg_
                    1. region a:6-33 [146952]
                78. 2eox
                    automatically matched to d1meyg_
                    1. region a:8-35 [146964]
                79. 2yta
                    automatically matched to d1meyg_
                    1. region a:134-161 [153758]
                80. 2ytm
                    automatically matched to d1meyg_
                    1. region a:8-35 [153768]
                81. 2en4
                    automatically matched to d1meyg_
                    1. region a:8-35 [146942]
                82. 2eoq
                    automatically matched to d1meyg_
                    1. region a:8-35 [146960]
                83. 2ytr
                    automatically matched to d1meyg_
                    1. region a:8-35 [153773]
                84. 2en2
                    automatically matched to d1meyg_
                    1. region a:8-34 [146940]
                85. 2en7
                    automatically matched to d1meyg_
                    1. region a:8-35 [146944]
                86. 2eon
                    automatically matched to d1meyg_
                    1. region a:8-35 [146957]
                87. 2ytb
                    automatically matched to d1meyg_
                    1. region a:192-218 [153759]
          2. Zinc finger with an artificial beta-turn [58861]
             original sequence taken from the third zinc finger domain of the human transcriptional repressor protein yy1
             1. Synthetic, based on Homo sapiens sequence [58862] (1)
                1. 1znm
                   1. chain a [46433]
             2. Homo sapiens [TaxId: 9606] [161317] (4)
                1. 2ent
                   automatically matched to d1znma_
                   1. region a:351-377 [146949]
                2. 2ep3
                   automatically matched to d1znma_
                   1. region a:18-37 [146969]
                3. 2eq3
                   automatically matched to d1znma_
                   1. region a:714-733 [146983]
                4. 2ysp
                   automatically matched to d1znma_
                   1. region a:18-37 [153752]
          3. FSD-EY [64669]
             1. Synthetic [64670] (1)
                1. 1fme
                   1. chain a [59878]
          4. TATA box-binding zinc finger, TATAZF [64671]
             1. Mouse (Mus musculus), Zif268 based [TaxId: 10090] [64672] (2)
                1. 1g2f
                   clone 6
                   1. chain c [60222]
                   2. chain f [60223]
                2. 1g2d
                   clone 2
                   1. chain c [60220]
                   2. chain f [60221]
          5. E6-binding zinc finger, different constructs [111544]
             1. Synthetic [111545] (2)
                1. 1rik
                   1. chain a [104952]
                2. 1rim
                   1. chain a [104953]
             2. Homo sapiens [TaxId: 9606] [161318] (1)
                1. 2en9
                   automatically matched to d1rika_
                   1. region a:13-39 [146945]
          6. AART, designed six-finger protein [144340]
             1. synthetic [144341] (2)
                1. 2i13
                   1. region a:31-184 [136964]
                2. 2i13
                   automatically matched to 2I13 A:31-184
                   1. region b:31-178 [136965]
          7. HIV REV-targetting Znf29 [161319]
             1. synthetic [161320] (2)
                1. 2ab3
                   1. region a:1-29 [146045]
                2. 2ab7
                   automatically matched to 2AB3 A:1-29
                   1. region a:1-28 [146046]
16. Protein A Ig(Fc)-binding domain mimics [58863] (1)
    1. Protein A Ig(Fc)-binding domain mimics [58864] (1)
       uperfamily
       1. Protein A Ig(Fc)-binding domain mimics [58865] (1)
          1. Protein A Ig(Fc)-binding domain mimics [58866]
             1. Synthetic [58867] (7)
                1. 1l6x
                   bound to Fc fragment of rituximab IgG1
                   complexed with fuc, gal, man, nag
                   1. chain b [73644]
                2. 1oqo
                   minimized version of protein A called mini-Z (Z34c)
                   complexed with fuc, man, nag
                   1. chain c [87317]
                   2. chain d [87318]
                3. 1oqx
                   minimized version of protein A called mini-Z (Z34c)
                   complexed with fuc, man, nag
                   1. chain c [87329]
                   2. chain d [87330]
                4. 1zdd
                   disulfide-stabilized minidomain
                   1. chain a [46435]
                5. 1zdb
                   phage-selected minidomain
                   1. chain a [46436]
                6. 1zdc
                   disulfide-stabilized minidomain
                   1. chain a [46434]
                7. 1zda
                   phage-selected minidomain
                   1. chain a [46437]
17. Zinc finger based beta-beta-alpha motif [58868] (1)
    1. Zinc finger based beta-beta-alpha motif [58869] (1)
       uperfamily
       1. Zinc finger based beta-beta-alpha motif [58870] (5)
          1. Full sequence design 1 (fsd-1) [58871]
             1. Synthetic [58872] (2)
                1. 1fsv
                   1. chain a [46438]
                2. 1fsd
                   1. chain a [46439]
          2. Computationally designed peptide with a beta-beta-alpha fold selection [58873]
             1. Synthetic [58874] (1)
                1. 1psv
                   1. chain a [46440]
          3. 23-residue designed metal-free peptide based on the zinc finger domains [58875]
             1. Synthetic [58876] (1)
                1. 1hcw
                   1. chain a [46441]
          4. BBA5 [111546]
             1. Synthetic [111547] (1)
                1. 1t8j
                   1. chain a [106665]
          5. Segment-swapped tetrameric beta-beta-alpha mini-protein [111548]
             1. Synthetic [111549] (3)
                1. 1sn9
                   1. chain a [105809]
                   2. chain b [105810]
                   3. chain c [105811]
                   4. chain d [105812]
                2. 1sna
                   1. chain a [105813]
                   2. chain b [105814]
                   3. chain c [105815]
                   4. chain d [105816]
                3. 1sne
                   1. chain a [105817]
                   2. chain b [105818]
18. helix-turn-helix motif [58877] (1)
    1. helix-turn-helix motif [58878] (1)
       uperfamily
       1. helix-turn-helix motif [58879] (2)
          1. Alpha-t-alpha, a de novo designed peptide [58880]
             1. Synthetic non-biological sequence [58881] (1)
                1. 1abz
                   1. chain a [46442]
          2. De novo designed 21 residue peptide [111550]
             1. synthetic [111551] (1)
                1. 1vrz
                   1. region a:2-22 [145789]
19. alpha2d [58882] (1)
    1. alpha2d [58883] (1)
       uperfamily
       1. alpha2d [58884] (1)
          1. alpha2d [58885]
             1. Synthetic [58886] (1)
                1. 1qp6
                   1. chain a [46443]
                   2. chain b [46444]
20. Right-handed coiled coil [58887] (1)
    1. Right-handed coiled coil [58888] (1)
       uperfamily
       1. Right-handed coiled coil [58889] (3)
          1. RH4 designed right-handed coiled coil tetramer [58890]
             1. Synthetic non-biological sequence [58891] (1)
                1. 1rh4
                   1. chain a [46445]
          2. RH3 designed right-handed coiled coil trimer [118406]
             1. synthetic [118407] (1)
                1. 1tgg
                   1. chain a [112423]
                   2. chain b [112424]
                   3. chain c [112425]
             2. synthetic construct [161321] (1)
                1. 2o6n
                   automatically matched to d1tgga_
                   1. region a:1-33 [148634]
21. TPR domain-based design [90307] (1)
    1. TPR domain-based design [90308] (1)
       uperfamily
       1. TPR domain-based design [90309] (6)
          alpha-helical arrays from an idealized TPR motif
          1. Designed protein cTPR3 [90310]
             1. Synthetic [90311] (1)
                1. 1na0
                   1. chain a [85479]
                   2. chain b [85480]
             2. Homo sapiens [TaxId: 9606] [161322] (1)
                1. 2vyi
                   automatically matched to d1na0a_
                   1. region a:91-205 [153706]
          2. Designed protein cTPR2 [90312]
             1. Synthetic [90313] (1)
                1. 1na3
                   1. chain a [85481]
                   2. chain b [85482]
          3. An 8 repeat consensus TPR superhelix [144342]
             1. synthetic [144343] (2)
                1. 2avp
                   1. region a:1-68 [127382]
                2. 2fo7
                   1. region a:1-136 [133872]
             2. Bacillus subtilis [TaxId: 1423] [161323] (1)
                1. 2q7f
                   automatically matched to d2avpa1
                   1. region a:127-191 [150085]
             3. Yersinia enterocolitica [TaxId: 630] [161324] (1)
                1. 2vgx
                   automatically matched to d2avpa1
                   1. region a:37-100 [153046]
22. Erythropoietin (EPO) mimetic peptides [58892] (1)
    1. Erythropoietin (EPO) mimetic peptides [58893] (1)
       uperfamily
       1. Erythropoietin (EPO) mimetic peptides [58894] (1)
          1. Erythropoietin (EPO) mimetic peptides [58895]
             1. Synthetic [58896] (3)
                1. 1ebp
                   1. chain c [46446]
                   2. chain d [46447]
                2. 1kvg
                   1. chain a [73059]
                3. 1kvf
                   1. chain a [73058]
23. IL-1 receptor type 1 antagonist peptide AF10847 [58897] (1)
    1. IL-1 receptor type 1 antagonist peptide AF10847 [58898] (1)
       uperfamily
       1. IL-1 receptor type 1 antagonist peptide AF10847 [58899] (1)
          1. IL-1 receptor type 1 antagonist peptide AF10847 [58900]
             1. Synthetic [58901] (1)
                1. 1g0y
                   bound to the receptor extracellular domains
                   1. chain i [46448]
24. Octreotide (Sandostatine), a somatostatine analogue [58902] (1)
    1. Octreotide (Sandostatine), a somatostatine analogue [58903] (1)
       uperfamily
       1. Octreotide (Sandostatine), a somatostatine analogue [58904] (1)
          1. Octreotide (Sandostatine), a somatostatine analogue [58905]
             1. Synthetic [58906] (2)
                1. 2soc
                   1. chain a [46449]
                2. 1soc
                   1. chain a [46450]
25. Calmodulin [58907] (1)
    1. Calmodulin [58908] (1)
       uperfamily
       1. Calmodulin [58909] (1)
          1. Calmodulin [58910]
             1. Synthetic [58911] (3)
                consensus sequence from a number of sources
                1. 1qtx
                   complex with RS20 peptide, chain B
                   1. chain a [88375]
                2. 1vrk
                   complex with RS20 peptide
                   1. chain a [46451]
                3. 1qs7
                   complex with RS20 peptide, chains B and D
                   1. chain a [88373]
                   2. chain c [88374]
26. WW domain-based designs [58912] (1)
    1. WW domain-based designs [58913] (1)
       uperfamily
       1. WW domain-based designs [58914] (4)
          1. Prototype WW domain [58915]
             1. Synthetic [58916] (1)
                1. 1e0m
                   1. chain a [46452]
             2. Homo sapiens [TaxId: 9606] [161325] (1)
                1. 2op7
                   automatically matched to d1e0ma_
                   1. region a:5-35 [148960]
             3. Mus musculus [TaxId: 10090] [161326] (6)
                1. 2ysf
                   automatically matched to d1e0ma_
                   1. region a:5-38 [153748]
                2. 2ysg
                   automatically matched to d1e0ma_
                   1. region a:5-40 [153749]
                3. 2ysb
                   automatically matched to d1e0ma_
                   1. region a:12-41 [153745]
                4. 2ysd
                   automatically matched to d1e0ma_
                   1. region a:15-45 [153747]
                5. 2ysh
                   automatically matched to d1e0ma_
                   1. region a:5-40 [153750]
                6. 2ysi
                   automatically matched to d1e0ma_
                   1. region a:5-37 [153751]
          2. CC45 [161327]
             An artificial WW domain designed using Statistical Coupling Analysis
             1. Synthetic [161328] (1)
                1. 1ymz
                   1. region a:1-38 [145919]
27. Artificial ankyrin repeat proteins [83017] (1)
    1. Artificial ankyrin repeat proteins [83018] (1)
       uperfamily
       1. Artificial ankyrin repeat proteins [83019] (9)
          1. Sank e3_5 [83020]
             1. Synthetic [83021] (1)
                1. 1mj0
                   1. chain a [79174]
             2. synthetic construct [161329] (1)
                1. 2qyj
                   automatically matched to d1mj0a_
                   1. region a:13-166 [151473]
          2. 3ank [83022]
             1. Synthetic [83023] (1)
                1. 1n0q
                   1. chain a [79754]
                   2. chain b [79755]
             2. synthetic construct [161330] (1)
                1. 2zgg
                   automatically matched to d1n0qb_
                   1. region a:31-109 [154420]
             3. Homo sapiens [TaxId: 9606] [161331] (2)
                1. 3c5r
                   automatically matched to d1n0qb_
                   1. region a:428-518 [155949]
                2. 3b7b
                   automatically matched to d1n0qb_
                   1. region a:879-954 [154927]
             4. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [161332] (2)
                1. 3deo
                   automatically matched to d1n0qb_
                   complexed with mg
                   1. region a:130-218 [157593]
                2. 3dep
                   automatically matched to d1n0qb_
                   complexed with cl
                   1. region a:130-218 [157595]
          3. 4ank [83024]
             1. Synthetic [83025] (1)
                1. 1n0r
                   1. chain a [79756]
             2. unidentified [TaxId: 32644] [161333] (1)
                1. 2v5q
                   automatically matched to d1n0ra_
                   1. region c:21-137 [152580]
          4. Off7 [111552]
             1. synthetic [111553] (1)
                1. 1svx
                   1. chain a [106058]
28. Carboxypeptidase A prodomain-based design [103789] (1)
    1. Carboxypeptidase A prodomain-based design [103790] (1)
       uperfamily
       1. Carboxypeptidase A prodomain-based design [103791] (1)
          1. Carboxypeptidase A prodomain-based design [103792]
             1. Synthetic, sequence chosen for maximal predicted stability [103793] (1)
                1. 1vjq
                   1. chain a [100830]
                   2. chain b [100831]
29. Ubiquitin [144344] (1)
    1. Ubiquitin [144345] (1)
       uperfamily
       1. Ubiquitin [144346] (4)
          1. Ubiquitin [144347]
             1. synthetic [144348] (14)
                1. 1yj1
                   1. region a:1-71 [123377]
                2. 1yj1
                   automatically matched to 1YJ1 A:1-71
                   1. region b:1-71 [123378]
                3. 1yj1
                   automatically matched to 1YJ1 A:1-71
                   1. region c:1-71 [123379]
                4. 1yiw
                   1. region a:1-71 [123368]
                5. 1yiw
                   automatically matched to 1YIW A:1-71
                   1. region b:1-71 [123369]
                6. 1yiw
                   automatically matched to 1YIW A:1-71
                   1. region c:1-71 [123370]
                7. 2fcs
                   automatically matched to 1YJ1 A:1-71
                   1. region a:1-71 [133280]
                8. 2fcs
                   automatically matched to 1YJ1 A:1-71
                   1. region b:1-71 [133281]
                9. 2fcn
                   1. region a:1-73 [133276]
                10. 2fcn
                    automatically matched to 2FCN A:1-73
                    1. region b:1-73 [133277]
                11. 2fcm
                    automatically matched to 1YJ1 A:1-71
                    1. region a:1-71 [133274]
                12. 2fcm
                    automatically matched to 1YJ1 A:1-71
                    1. region b:1-71 [133275]
                13. 2fcq
                    automatically matched to 1YIW A:1-71
                    1. region a:1-71 [133278]
                14. 2fcq
                    automatically matched to 1YIW A:1-71
                    1. region b:1-71 [133279]
             2. Paramecium tetraurelia strain d4-2 [TaxId: 412030] [161334] (1)
                1. 2jvc
                   automatically matched to d1yiwa1
                   1. region a:6-76 [148222]
             3. Saccharomyces cerevisiae [TaxId: 4932] [161335] (1)
                1. 2jwz
                   automatically matched to d1yiwa1
                   1. region a:1-71 [148232]
             4. Homo sapiens [TaxId: 9606] [161336] (4)
                1. 2zcb
                   automatically matched to d1yiwa1
                   1. region a:1-71 [154336]
                2. 3dbh
                   automatically matched to d2fcna1
                   complexed with zn; mutant
                   1. region i:103-173 [157472]
                3. 3dbl
                   automatically matched to d1yiwa1
                   complexed with zn; mutant
                   1. region i:103-171 [157481]
                4. 3dqv
                   automatically matched to d1yiwa1
                   complexed with zn; mutant
                   1. region a:103-171 [157827]
30. Cro lambda fold design [144349] (1)
    1. Cro lambda fold design [144350] (1)
       uperfamily
       1. Cro lambda fold design [144351] (1)
          1. Sn4m [144352]
             1. synthetic [144353] (1)
                1. 2cw1
                   1. region a:1-65 [130918]
31. Scorpion toxin-based designs [58917] (1)
    1. Scorpion toxin-based designs [58918] (2)
       uperfamily
       1. Potassium channel toxin hstx1 [58919] (1)
          1. Potassium channel toxin hstx1 [58920]
             1. Synthetic [58921] (1)
                1. 1quz
                   1. chain a [46453]
       2. Mini-protein reproducing the core of the CD4 surface [58922] (1)
          1. Mini-protein reproducing the core of the CD4 surface [58923]
             interacting with the hiv-1 envelope glycoprotein
             1. Synthetic [58924] (9)
                1. 1yym
                   complexed with edo, ipa, mpt, nag, ndg, vlm; mutant
                   1. region m:2-27 [144723]
                2. 2i5y
                   complexed with bif, mpt, nag, ndg, vlm
                   1. region s:2-27 [145505]
                3. 2i5y
                   complexed with bif, mpt, nag, ndg, vlm
                   1. region m:2-27 [145504]
                4. 1yym
                   automatically matched to 1YYM M:2-27
                   complexed with edo, ipa, mpt, nag, ndg, vlm; mutant
                   1. region s:1002-1027 [144724]
                5. 2i60
                   complexed with ipa, mpt, nag, ndg, vlm
                   1. region s:2-27 [145507]
                6. 2i60
                   complexed with ipa, mpt, nag, ndg, vlm
                   1. region m:2-27 [145506]
                7. 1yyl
                   complexed with bif, mpt, nag, ndg, vlm; mutant
                   1. region m:2-27 [144721]
                8. 1yyl
                   automatically matched to 1YYL M:2-27
                   complexed with bif, mpt, nag, ndg, vlm; mutant
                   1. region s:1002-1027 [144722]
                9. 1d5q
                   1. chain a [46454]
32. TH (toxin hand)-motif beta-sheet mini-protein designs [64673] (1)
    1. TH (toxin hand)-motif beta-sheet mini-protein designs [64674] (1)
       uperfamily
       1. TH (toxin hand)-motif beta-sheet mini-protein designs [64675] (3)
          1. TH 10A-ox [64676]
             1. Synthetic [64677] (1)
                1. 1ic9
                   1. chain a [62261]
          2. TH 1-ox [64678]
             1. Synthetic [64679] (1)
                1. 1icl
                   1. chain a [62268]
          3. TH10B-ox [64680]
             1. Synthetic [64681] (1)
                1. 1ico
                   1. chain a [62269]
33. Inhibitor of mammalian ribonucleotide reductase [58925] (1)
    1. Inhibitor of mammalian ribonucleotide reductase [58926] (1)
       uperfamily
       1. Inhibitor of mammalian ribonucleotide reductase [58927] (1)
          1. Inhibitor of mammalian ribonucleotide reductase [58928]
             1. Synthetic [58929] (1)
                1. 1foz
                   1. chain a [46455]
34. Integrin-binding RGD peptide [64682] (1)
    1. Integrin-binding RGD peptide [64683] (1)
       uperfamily
       1. Integrin-binding RGD peptide [64684] (1)
          1. Integrin-binding RGD peptide [64685]
             1. Synthetic [64686] (2)
                1. 1fuv
                   isomer-a
                   1. chain a [60032]
                2. 1ful
                   isomer-b
                   1. chain a [60031]
35. Peptide antagonists of IGF-1 [64687] (1)
    1. Peptide antagonists of IGF-1 [64688] (1)
       uperfamily
       1. Peptide antagonists of IGF-1 [64689] (1)
          1. Peptide antagonists of IGF-1 [64690]
             1. Synthetic [64691] (7)
                1. 1gjg
                   1. chain a [60574]
                2. 1in2
                   1. chain a [62595]
                3. 1gjf
                   1. chain a [60573]
                4. 1lb7
                   1. chain a [73799]
                5. 1in3
                   1. chain a [62596]
                6. 1imw
                   1. chain a [62592]
                7. 1gje
                   1. chain a [60572]
36. beta-hairpin design [64692] (1)
    1. beta-hairpin design [64693] (1)
       uperfamily
       1. beta-hairpin design [64694] (9)
          1. Tryptophan zipper 1 [64695]
             1. Synthetic [64696] (1)
                1. 1le0
                   1. chain a [73859]
          2. Tryptophan zipper 2 [64697]
             1. Synthetic [64698] (1)
                1. 1le1
                   1. chain a [73860]
          3. Tryptophan zipper 4 [64699]
             1. Synthetic [64700] (1)
                1. 1le3
                   1. chain a [73861]
          4. DP-TT2 [64701]
             1. Synthetic [64702] (1)
                1. 1jy9
                   1. chain a [63318]
          5. Peptide MBH12 (rg-kwty-ng-itye-gr) [70058]
             1. Synthetic [70059] (2)
                1. 1k43
                   1. chain a [68124]
                2. 1j4m
                   1. chain a [66385]
          6. A minimal peptide scaffold for beta-turn display [83026]
             1. Synthetic [83027] (2)
                1. 1n0d
                   1. chain a [79733]
                2. 1n09
                   1. chain a [79732]
          7. Bhpw_pdg, beta-hairpin peptide [103794]
             1. Synthetic [103795] (1)
                1. 1n0a
                   1. chain a [91506]
          8. Bhp_hwlv, disulfide cyclized beta-hairpin [103796]
             1. Synthetic [103797] (1)
                1. 1n0c
                   1. chain a [91507]
          9. Chignolin [103798]
             1. Synthetic [103799] (1)
                1. 1uao
                   1. chain a [99137]
37. Trp-cage miniprotein [75769] (1)
    1. Trp-cage miniprotein [75770] (1)
       uperfamily
       1. Trp-cage miniprotein [75771] (1)
          1. Trp-cage miniprotein, different constructs [75772]
             1. Synthetic [75773] (2)
                1. 1l2y
                   1. chain a [73530]
                2. 1rij
                   1. chain a [104951]
38. Synthetic high affinity IgE receptor antagonists [64703] (1)
    1. Synthetic high affinity IgE receptor antagonists [64704] (2)
       not a true superfamily
       uperfamily
       1. Hairpin peptide [64705] (1)
          1. Hairpin peptide [64706]
             1. Synthetic [64707] (1)
                1. 1jbf
                   1. chain a [62846]
       2. Zeta peptides [75774] (2)
          1. E109 [75775]
             1. Synthetic [75776] (1)
                1. 1kcn
                   1. chain a [72301]
          2. E131 [75777]
             1. Synthetic [75778] (1)
                1. 1kco
                   1. chain a [72302]
39. IFN mimetic syr6 [75779] (1)
    1. IFN mimetic syr6 [75780] (1)
       uperfamily
       1. IFN mimetic syr6 [75781] (1)
          1. IFN mimetic syr6 [75782]
             1. Synthetic [75783] (2)
                1. 1id6
                   1. chain a [71193]
                2. 1id7
                   1. chain a [71194]
40. TAZ (CH) Zn-binding domain based design [75784] (1)
    1. TAZ (CH) Zn-binding domain based design [75785] (1)
       uperfamily
       1. TAZ (CH) Zn-binding domain based design [75786] (1)
          1. Fragment of the CH1 domain of cbp [75787]
             1. Synthetic [75788] (1)
                1. 1liq
                   Non-native conformation
                   1. chain a [73925]
41. Beta-sheet designs [75789] (1)
    1. Beta-sheet designs [75790] (1)
       uperfamily
       1. Beta-sheet designs [75791] (2)
          1. B4dimer [75792]
             de novo designed eight-stranded beta-sheet assembled using a disulfide bond
             1. Synthetic [75793] (2)
                1. 1jy4
                   1. chain a [71938]
                   2. chain b [71939]
                2. 1jy6
                   B4dimer A variant
                   1. chain a [71942]
                   2. chain b [71943]
          2. Betacore [75794]
             designed water soluble four-stranded antiparallel beta-sheet protein
             1. Synthetic [75795] (1)
                1. 1k09
                   1. chain a [71972]
                   2. chain b [71973]
42. PW2, a tryptophan-rich anticocidial peptide [75796] (1)
    1. PW2, a tryptophan-rich anticocidial peptide [75797] (1)
       uperfamily
       1. PW2, a tryptophan-rich anticocidial peptide [75798] (1)
          1. PW2, a tryptophan-rich anticocidial peptide [75799]
             1. Synthetic [75800] (1)
                1. 1m02
                   1. chain a [74353]
43. Designed EF-hand type cation-binding loop [111554] (1)
    1. Designed EF-hand type cation-binding loop [111555] (1)
       uperfamily
       1. Designed EF-hand type cation-binding loop [111556] (1)
          1. Lanthanide-binding peptide [111557]
             1. Synthetic [111558] (1)
                1. 1tjb
                   1. chain a [107024]
                   2. chain b [107025]
44. Metalloporphyrin-binding designed peptides [90314] (1)
    1. Metalloporphyrin-binding designed peptides [90315] (1)
       uperfamily
       1. Metalloporphyrin-binding designed peptides [90316] (2)
          1. Mimochrome, heme-binding design [90317]
             1. Synthetic [90318] (2)
                1. 1pyz
                   1. chain a [111646]
                   2. chain b [111647]
                2. 1vl3
                   1. chain a [108716]
                   2. chain b [108717]
          2. De novo designed cyclic peptide [103800]
             1. Synthetic [103801] (1)
                1. 1pbz
                   1. chain a [94424]
                   2. chain b [94425]

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk