Structural Classification of Proteins
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Protein: Immunoglobulin light chain kappa variable domain, VL-kappa from Human (Homo sapiens), cluster 1 [TaxId: 9606]

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Immunoglobulin-like beta-sandwich [48725]
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. Superfamily: Immunoglobulin [48726]
    link to SUPERFAMILY database - Superfamily
  5. Family: V set domains (antibody variable domain-like) [48727]
  6. Protein: Immunoglobulin light chain kappa variable domain, VL-kappa [88519]
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. Species: Human (Homo sapiens), cluster 1 [TaxId: 9606] [88520]

PDB Entry Domains:

  1. 1bww picpic
    VL dimer of Bence-Jones protein REI
    mutant
    1. chain a [20518] picpiclink
    2. chain b [20519] picpiclink
  2. 1rz7 picpicxrefxrefxref
    part of anti HIV-1 gp120-reactive Fab 48D
    complexed with gol
    1. region l:2-107 [98135] picpiclink
  3. 1rzg picpicxrefxrefxref
    part of anti HIV-1 gp120-reactive Fab 412D
    complexed with suc
    1. region b:1-107 [98156] picpiclink
    2. region d:1-107 [98160] picpiclink
  4. 1b0w picpic
    VL dimer of Bence-Jones protein BRE
    1. chain a [20532] picpiclink
    2. chain b [20533] picpiclink
    3. chain c [20534] picpiclink
  5. 1wtl picpic
    VL dimer of Bence-Jones protein WAT
    1. chain a [20530] picpiclink
    2. chain b [20531] picpiclink
  6. 1vge picpicxrefxrefxref
    part of humanized Fab TR1.9
    1. region l:1-107 [20094] picpiclink
  7. 1qp1 picpic
    VL dimer of Bence-Jones protein BRE
    1. chain a [20535] picpiclink
    2. chain b [20536] picpiclink
    3. chain c [20537] picpiclink
  8. 1dql picpicxref
    part of IgM Fv MEZ
    1. chain l [19828] picpiclink
  9. 1bre picpic
    VL dimer of Bence-Jones protein BRE
    1. chain a [20538] picpiclink
    2. chain b [20539] picpiclink
    3. chain c [20540] picpiclink
    4. chain d [20541] picpiclink
    5. chain e [20542] picpiclink
    6. chain f [20543] picpiclink
  10. 1rei picpic
    VL dimer of Bence-Jones protein REI
    1. chain a [20520] picpiclink
    2. chain b [20521] picpiclink
  11. 1f6l picpic
    VL of anti-ferritin antibody
    1. chain l [76159] picpiclink
  12. 1dee picpicxrefxrefxrefxref
    part of IgM RF 2A2
    1. region a:1-107 [20442] picpiclink
    2. region c:1001-1107 [20444] picpiclink
    3. region e:2001-2107 [20446] picpiclink
  13. 1igm picpicxref
    part of IgM Fv POT
    1. chain l [19826] picpiclink
  14. 1hez picpicxrefxrefxrefxref
    part of IgM RF 2A2
    complexed with imd
    1. region a:1-107 [60983] picpiclink
    2. region c:1-107 [60987] picpiclink
  15. 1b6d picpicxref
    part of Bence-Jones protein DEL
    1. region a:1-107 [20603] picpiclink
    2. region b:1-107 [20604] picpiclink
  16. 1dfb picpicxrefxrefxref
    part of Fab 3D6
    1. region l:1-106 [19810] picpiclink
  17. 1rzi picpicxrefxrefxref
    part of anti HIV-1 gp120-reactive Fab 47E
    1. region a:2-107 [98166] picpiclink
    2. region c:1-107 [98170] picpiclink
    3. region e:2-107 [98174] picpiclink
    4. region g:2-107 [98178] picpiclink
    5. region i:2-107 [98182] picpiclink
    6. region k:2-107 [98186] picpiclink
    7. region m:2-107 [98190] picpiclink
    8. region o:2-107 [98194] picpiclink
  18. 1ar2 picpic
    VL of Bence-Jones protein REI; disulfide-free mutant
    1. chain a [20522] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk