Structural Classification of Proteins
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Superfamily: Pectin lyase-like

superhelix turns are made of 3 strands each
link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Single-stranded right-handed beta-helix [51125]
    superhelix turns are made of parallel beta-strands and (short) turns
  4. Superfamily: Pectin lyase-like [51126]
    superhelix turns are made of 3 strands each
    link to SUPERFAMILY database - Superfamily

Families:

  1. Pectate lyase-like [51127] (6)
    1. Pectate lyase [51128]
      1. Erwinia chrysanthemi, type C [TaxId: 556] [51129] (14)
        1. 1o88 picpic
          complexed with ca
          1. chain a [81178] picpiclink
        2. 1o8m picpic
          1. chain a [81193] picpiclink
        3. 1o8i picpic
          1. chain a [81189] picpiclink
        4. 1o8d picpic
          complexed with ca
          1. chain a [81184] picpiclink
        5. 1o8g picpic
          complexed with ca
          1. chain a [81187] picpiclink
        6. 1o8k picpic
          complexed with ca
          1. chain a [81191] picpiclink
        7. 1o8l picpic
          complexed with ca
          1. chain a [81192] picpiclink
        8. 1o8j picpic
          complexed with ca
          1. chain a [81190] picpiclink
        9. 1air picpic
          complexed with so4
          1. chain a [28018] picpiclink
        10. 2pec picpic
          1. chain a [28019] picpiclink
        11. 1o8f picpic
          complexed with ca
          1. chain a [81186] picpiclink
        12. 1o8h picpic
          complexed with ca
          1. chain a [81188] picpiclink
        13. 1plu picpic
          complexed with lu
          1. chain a [28020] picpiclink
        14. 1o8e picpic
          complexed with ca
          1. chain a [81185] picpiclink
      2. Erwinia chrysanthemi, type A [TaxId: 556] [75024] (4)
        1. 1pe9 picpic
          mutant
          1. chain a [94595] picpiclink
          2. chain b [94596] picpiclink
        2. 1jta picpic
          complexed with so4
          1. chain a [71859] picpiclink
        3. 1jrg picpic
          complexed with so4
          1. chain a [71825] picpiclink
          2. chain b [71826] picpiclink
        4. 1ooc picpic
          mutant
          1. chain a [93377] picpiclink
          2. chain b [93378] picpiclink
      3. Erwinia chrysanthemi, type E [TaxId: 556] [51130] (1)
        1. 1pcl picpic
          CA-atoms only
          1. chain a [28021] picpiclink
      4. Bacillus subtilis [TaxId: 1423] [51131] (2)
        1. 1bn8 picpic
          complexed with ium
          1. chain a [28022] picpiclink
        2. 2bsp picpic
          complexed with ium; mutant
          1. chain a [28023] picpiclink
      5. Bacillus sp., strain ksmp15 [TaxId: 1409] [51132] (1)
        Low-molecular weight high-alkaline enzyme
        1. 1ee6 picpic
          complexed with ca
          1. chain a [28024] picpiclink
    2. Major pollen allergen Jun a 1 [117306]
      1. Ozark white cedar (Juniperus ashei) [TaxId: 13101] [117307] (1)
        SQ P81294 22-367
        1. 1pxz picpic
          1. chain a [111643] picpiclink
          2. chain b [111644] picpiclink
  2. Pectin lyase [51133] (2)
    1. Pectin lyase [51134]
      1. Aspergillus niger, type A [TaxId: 5061] [51135] (2)
        1. 1idk picpic
          CASP2
          1. chain a [28025] picpiclink
        2. 1idj picpic
          1. chain a [28026] picpiclink
          2. chain b [28027] picpiclink
      2. Aspergillus niger, type B [TaxId: 5061] [51136] (1)
        1. 1qcx picpic
          1. chain a [28028] picpiclink
  3. Galacturonase [51137] (7)
    1. Rhamnogalacturonase A [51138]
      1. Aspergillus aculeatus [TaxId: 5053] [51139] (1)
        1. 1rmg picpic
          complexed with man, nag
          1. chain a [28029] picpiclink
    2. Polygalacturonase [51140]
      1. Erwinia carotovora, subsp. carotovora [TaxId: 554] [51141] (1)
        1. 1bhe picpic
          CASP3
          1. chain a [28030] picpiclink
      2. Fungus (Aspergillus aculeatus) [TaxId: 5053] [63847] (2)
        1. 1ia5 picpic
          complexed with man, nag
          1. chain a [62111] picpiclink
        2. 1ib4 picpic
          complexed with cd, man, nag
          1. chain a [62143] picpiclink
          2. chain b [62144] picpiclink
      3. Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369] [75025] (3)
        1. 1k5c picpic
          complexed with cl, gol, nag
          1. chain a [72076] picpiclink
        2. 1kcc picpic
          complexed with cl, gtr, na, nag
          1. chain a [72298] picpiclink
        3. 1kcd picpic
          complexed with cl, gtr, nag
          1. chain a [72299] picpiclink
      4. Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061] [101950] (1)
        1. 1nhc picpic
          complexed with gol, man, nag, so4
          1. chain a [91879] picpiclink
          2. chain b [91880] picpiclink
          3. chain c [91881] picpiclink
          4. chain d [91882] picpiclink
          5. chain e [91883] picpiclink
          6. chain f [91884] picpiclink
      5. Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061] [63382] (1)
        1. 1czf picpic
          1. chain a [28031] picpiclink
          2. chain b [28032] picpiclink
      6. Fusarium moniliforme [TaxId: 117187] [69332] (1)
        1. 1hg8 picpic
          complexed with nag
          1. chain a [65830] picpiclink
  4. Chondroitinase B [51144] (1)
    1. Chondroitinase B [51145]
      1. Pedobacter heparinus [TaxId: 984] [51146] (4)
        SQ Q46079 27-506
        synonym: Flavobacterium heparinum
        1. 1ofl picpic
          complexed with bgc, ca, dgc, gcu, gla, man, mxz, ngk, ngl, ram, xyp
          1. chain a [103934] picpiclink
        2. 1dbg picpic
          1. chain a [28033] picpiclink
        3. 1dbo picpic
          1. chain a [28034] picpiclink
        4. 1ofm picpic
          complexed with bdp, bgc, dgc, gcu, gla, man, mxz, ngl, ram, xyp
          1. chain a [92829] picpiclink
  5. iota-carrageenase [69333] (1)
    1. iota-carrageenase [69334]
      1. Alteromonas sp., atcc 43554 [TaxId: 232] [69335] (2)
        1. 1h80 picpic
          complexed with ca, cl, gol, na
          1. chain a [65714] picpiclink
          2. chain b [65715] picpiclink
        2. 1ktw picpic
          complexed with ca, cl, dgs, g4s, na
          1. chain a [84468] picpiclink
          2. chain b [84469] picpiclink
  6. Pectate transeliminase [101951] (1)
    1. Pectate transeliminase [101952]
      type L pectate lyase, pel9a
      1. Erwinia chrysanthemi [TaxId: 556] [101953] (1)
        1. 1ru4 picpic
          complexed with ca
          1. chain a [97836] picpiclink
  7. Dextranase, catalytic domain [101954] (1)
    1. Dextranase, catalytic domain [101955]
      1. Penicillium minioluteum [TaxId: 28574] [101956] (2)
        1. 1ogm picpicxref
          mutant
          1. region x:202-574 [92924] picpiclink
        2. 1ogo picpicxref
          complexed with bgc, glc; mutant
          1. region x:202-574 [92926] picpiclink
  8. Pectin methylesterase [51147] (2)
    1. Pectin methylesterase PemA [51148]
      1. Erwinia chrysanthemi [TaxId: 556] [51149] (1)
        1. 1qjv picpic
          CASP4
          complexed with cl
          1. chain a [28035] picpiclink
          2. chain b [28036] picpiclink
      2. Carrot (Daucus carota) [TaxId: 4039] [75026] (1)
        1. 1gq8 picpic
          complexed with cac, pca
          1. chain a [70350] picpiclink
  9. P22 tailspike protein [51150] (1)
    1. P22 tailspike protein [51151]
      1. Salmonella phage P22 [TaxId: 10754] [51152] (12)
        1. 1tyx picpic
          complexed with abe, gal, man, ram
          1. chain a [28040] picpiclink
        2. 1tyw picpic
          complexed with gal, glc, man, ram, tyv
          1. chain a [28039] picpiclink
        3. 1tyv picpic
          1. chain a [28038] picpiclink
        4. 1tyu picpic
          complexed with gal, man, ram, tyv
          1. chain a [28037] picpiclink
        5. 1qq1 picpic
          mutant
          1. chain a [28041] picpiclink
        6. 1qrb picpic
          mutant
          1. chain a [28042] picpiclink
        7. 1clw picpic
          1. chain a [28043] picpiclink
        8. 1tsp picpic
          1. chain a [28044] picpiclink
        9. 1qa3 picpic
          1. chain a [28046] picpiclink
        10. 1qa1 picpic
          1. chain a [28047] picpiclink
        11. 1qa2 picpic
          1. chain a [28048] picpiclink
        12. 1qrc picpic
          mutant
          1. chain a [28045] picpiclink
  10. Virulence factor P.69 pertactin [51153] (1)
    1. Virulence factor P.69 pertactin [51154]
      1. Bordetella pertussis [TaxId: 520] [51155] (1)
        1. 1dab picpic
          1. chain a [28049] picpiclink
  11. Filamentous hemagglutinin FhaB, secretion domain [101957] (1)
    1. Filamentous hemagglutinin FhaB, secretion domain [101958]
      1. Bordetella pertussis [TaxId: 520] [101959] (1)
        1. 1rwr picpic
          1. chain a [97990] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk