Structural Classification of Proteins
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Superfamily: Pectin lyase-like

superhelix turns are made of 3 strands each
link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Single-stranded right-handed beta-helix [51125]
    superhelix turns are made of parallel beta-strands and (short) turns
  4. Superfamily: Pectin lyase-like [51126]
    superhelix turns are made of 3 strands each
    link to SUPERFAMILY database - Superfamily

Families:

  1. Pectate lyase-like [51127] (6)
    1. Pectate lyase [51128]
      1. Erwinia chrysanthemi, type C [TaxId: 556] [51129] (14) picpic
      2. Erwinia chrysanthemi, type A [TaxId: 556] [75024] (4) picpic
      3. Erwinia chrysanthemi, type E [TaxId: 556] [51130] (1) picpic
      4. Bacillus subtilis [TaxId: 1423] [51131] (2) picpic
      5. Bacillus sp., strain ksmp15 [TaxId: 1409] [51132] (1) picpic
        Low-molecular weight high-alkaline enzyme
    2. Major pollen allergen Jun a 1 [117306]
      1. Ozark white cedar (Juniperus ashei) [TaxId: 13101] [117307] (1) picpic
        SQ P81294 22-367
  2. Pectin lyase [51133] (2)
    1. Pectin lyase [51134]
      1. Aspergillus niger, type A [TaxId: 5061] [51135] (2) picpic
      2. Aspergillus niger, type B [TaxId: 5061] [51136] (1) picpic
  3. Galacturonase [51137] (7)
    1. Rhamnogalacturonase A [51138]
      1. Aspergillus aculeatus [TaxId: 5053] [51139] (1) picpic
    2. Polygalacturonase [51140]
      1. Erwinia carotovora, subsp. carotovora [TaxId: 554] [51141] (1) picpic
      2. Fungus (Aspergillus aculeatus) [TaxId: 5053] [63847] (2) picpic
      3. Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369] [75025] (3) picpic
      4. Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061] [101950] (1) picpic
      5. Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061] [63382] (1) picpic
      6. Fusarium moniliforme [TaxId: 117187] [69332] (1) picpic
  4. Chondroitinase B [51144] (1)
    1. Chondroitinase B [51145]
      1. Pedobacter heparinus [TaxId: 984] [51146] (4) picpic
        SQ Q46079 27-506
        synonym: Flavobacterium heparinum
  5. iota-carrageenase [69333] (1)
    1. iota-carrageenase [69334]
      1. Alteromonas sp., atcc 43554 [TaxId: 232] [69335] (2) picpic
  6. Pectate transeliminase [101951] (1)
    1. Pectate transeliminase [101952]
      type L pectate lyase, pel9a
      1. Erwinia chrysanthemi [TaxId: 556] [101953] (1) picpic
  7. Dextranase, catalytic domain [101954] (1)
    1. Dextranase, catalytic domain [101955]
      1. Penicillium minioluteum [TaxId: 28574] [101956] (2) picpic
  8. Pectin methylesterase [51147] (2)
    1. Pectin methylesterase PemA [51148]
      1. Erwinia chrysanthemi [TaxId: 556] [51149] (1) picpic
      2. Carrot (Daucus carota) [TaxId: 4039] [75026] (1) picpic
  9. P22 tailspike protein [51150] (1)
    1. P22 tailspike protein [51151]
      1. Salmonella phage P22 [TaxId: 10754] [51152] (12) picpic
  10. Virulence factor P.69 pertactin [51153] (1)
    1. Virulence factor P.69 pertactin [51154]
      1. Bordetella pertussis [TaxId: 520] [51155] (1) picpic
  11. Filamentous hemagglutinin FhaB, secretion domain [101957] (1)
    1. Filamentous hemagglutinin FhaB, secretion domain [101958]
      1. Bordetella pertussis [TaxId: 520] [101959] (1) picpic
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk