Structural Classification of Proteins
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Superfamily: cAMP-binding domain-like

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Double-stranded beta-helix [51181]
    one turn of helix is made by two pairs of antiparallel strands linked with short turns
    has appearance of a sandwich of distinct architecture and jelly-roll topology
  4. Superfamily: cAMP-binding domain-like [51206]
    link to SUPERFAMILY database - Superfamily

Families:

  1. CO-sensing protein CooA, N-terminal domain [51207] (1)
    heme-binding domain
    1. CO-sensing protein CooA, N-terminal domain [51208]
      1. Rhodospirillum rubrum [TaxId: 1085] [51209] (1)
        1. 1ft9 picpicxref
          complexed with hem
          1. region a:2-133 [28131] picpiclink
          2. region b:2-133 [28132] picpiclink
  2. Listeriolysin regulatory protein PrfA, N-terminal domain [89419] (1)
    1. Listeriolysin regulatory protein PrfA, N-terminal domain [89420]
      1. Bacteria (Listeria monocytogenes) [TaxId: 1639] [89421] (11)
        1. 2bgc picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1omia1
          complexed with dtt, dtu; mutant
          1. region a:7-137 [128459] picpiclink
        2. 2bgc picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1omia1
          complexed with dtt, dtu; mutant
          1. region b:7-137 [128461] picpiclink
        3. 2bgc picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1omia1
          complexed with dtt, dtu; mutant
          1. region d:7-137 [128463] picpiclink
        4. 2bgc picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1omia1
          complexed with dtt, dtu; mutant
          1. region e:7-137 [128465] picpiclink
        5. 2bgc picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1omia1
          complexed with dtt, dtu; mutant
          1. region f:7-137 [128467] picpiclink
        6. 2bgc picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1omia1
          complexed with dtt, dtu; mutant
          1. region g:7-137 [128469] picpiclink
        7. 2bgc picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1omia1
          complexed with dtt, dtu; mutant
          1. region h:7-137 [128471] picpiclink
        8. 2bgc picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1omia1
          complexed with dtt, dtu; mutant
          1. region i:7-137 [128473] picpiclink
        9. 2beo picpicxrefxref
          automatically matched to d1omia1
          complexed with acm, cl, gln, pg4
          1. region a:7-137 [128382] picpiclink
        10. 2beo picpicxrefxref
          automatically matched to d1omia1
          complexed with acm, cl, gln, pg4
          1. region b:7-137 [128384] picpiclink
        11. 1omi picpicxref
          complexed with gol
          1. region a:1005-1137 [87079] picpiclink
          2. region b:2005-2137 [87081] picpiclink
  3. cAMP-binding domain [51210] (14)
    Pfam 00027
    1. Catabolite gene activator protein, N-terminal domain [51211]
      1. Escherichia coli [TaxId: 562] [51212] (26)
        1. 1i5z picpicxref
          complexed with cmp, trs
          1. region a:6-137 [83670] picpiclink
          2. region b:1-137 [83672] picpiclink
        2. 1zrf picpicxrefxref
          automatically matched to d1i5zb2
          complexed with cmp, dio
          1. region a:8-137 [125544] picpiclink
        3. 1zrf picpicxrefxref
          automatically matched to d1i5zb2
          complexed with cmp, dio
          1. region b:8-137 [125546] picpiclink
        4. 1g6n picpicxref
          complexed with cmp
          1. region a:7-137 [28139] picpiclink
          2. region b:307-437 [28140] picpiclink
        5. 1hw5 picpicxref
          complexed with cmp; mutant
          1. region a:1-137 [28137] picpiclink
          2. region b:1-137 [28138] picpiclink
        6. 1i6x picpicxref
          complexed with cmp, trs; mutant
          1. region a:6-137 [83674] picpiclink
          2. region b:8-137 [83676] picpiclink
        7. 2cgp picpicxref
          protein/DNA complex; complexed with cmp
          1. region a:8-137 [28141] picpiclink
        8. 2gzw picpicxrefxrefxrefxref
          automatically matched to d1i5zb2
          complexed with cmp
          1. region a:8-137 [135918] picpiclink
        9. 2gzw picpicxrefxrefxrefxref
          automatically matched to d1i5zb2
          complexed with cmp
          1. region b:8-137 [135920] picpiclink
        10. 2gzw picpicxrefxrefxrefxref
          automatically matched to d1i5zb2
          complexed with cmp
          1. region c:8-137 [135922] picpiclink
        11. 2gzw picpicxrefxrefxrefxref
          automatically matched to d1i5zb2
          complexed with cmp
          1. region d:8-137 [135924] picpiclink
        12. 1j59 picpicxref
          complexed with cmp
          1. region a:9-137 [71533] picpiclink
          2. region b:9-137 [71535] picpiclink
        13. 1zre picpicxrefxref
          automatically matched to d1i5zb2
          complexed with cmp
          1. region a:8-137 [125540] picpiclink
        14. 1zre picpicxrefxref
          automatically matched to d1i5zb2
          complexed with cmp
          1. region b:8-137 [125542] picpiclink
        15. 1zrc picpicxrefxref
          automatically matched to d1i5zb2
          complexed with cmp
          1. region a:8-137 [125532] picpiclink
        16. 1zrc picpicxrefxref
          automatically matched to d1i5zb2
          complexed with cmp
          1. region b:8-137 [125534] picpiclink
        17. 1zrd picpicxrefxref
          automatically matched to d1i5zb2
          complexed with cmp
          1. region a:8-137 [125536] picpiclink
        18. 1zrd picpicxrefxref
          automatically matched to d1i5zb2
          complexed with cmp
          1. region b:8-137 [125538] picpiclink
        19. 1o3r picpicxref
          complexed with cmp
          1. region a:8-137 [86608] picpiclink
        20. 1run picpicxref
          protein/DNA complex; complexed with cmp
          1. region a:9-137 [28142] picpiclink
          2. region b:9-137 [28143] picpiclink
        21. 1lb2 picpicxrefxref
          complexed with cmp
          1. region a:9-137 [77870] picpiclink
        22. 1o3q picpicxref
          complexed with cmp
          1. region a:8-137 [86606] picpiclink
        23. 1o3s picpicxref
          complexed with cmp; mutant
          1. region a:8-137 [86610] picpiclink
        24. 1ruo picpicxref
          protein/DNA complex; complexed with cmp; mutant
          1. region a:9-137 [28144] picpiclink
          2. region b:9-137 [28145] picpiclink
        25. 1cgp picpicxref
          protein/DNA complex; complexed with cmp
          1. region a:9-137 [28135] picpiclink
          2. region b:9-137 [28136] picpiclink
        26. 1o3t picpicxref
          complexed with cmp
          1. region a:9-137 [86612] picpiclink
          2. region b:9-137 [86614] picpiclink
    2. CRP-like transcriptional regulator TM1171, N-terminal domain [101991]
      1. Thermotoga maritima [TaxId: 2336] [101992] (1)
        1. 1o5l picpic
          structural genomics
          DNA-binding domain (res. 130-213) is disordered in this structure
          1. region a:1-129 [92506] picpiclink
    3. Regulatory subunit of Protein kinase A [51213]
      duplication: consists of two similar domains
      1. Cow (Bos taurus) [TaxId: 9913] [51214] (4)
        SQ P00514 109-376
        1. 1ne6 picpic
          complexed with sp1; mutant
          1. region a:109-244 [91831] picpiclink
          2. region a:245-376 [91832] picpiclink
        2. 1ne4 picpic
          complexed with rp1; mutant
          1. region a:109-244 [91829] picpiclink
          2. region a:245-376 [91830] picpiclink
        3. 1rl3 picpic
          complexed with gol, pcg
          1. region a:109-244 [104975] picpiclink
          2. region a:245-376 [104976] picpiclink
          3. region b:509-644 [104977] picpiclink
          4. region b:645-767 [104978] picpiclink
        4. 1rgs picpic
          complexed with cmp; mutant
          1. region a:113-244 [28146] picpiclink
          2. region a:245-376 [28147] picpiclink
      2. Rat (Rattus norvegicus) [TaxId: 10116] [63861] (1)
        1. 1cx4 picpic
          complexed with cmp; mutant
          1. region a:130-265 [59099] picpiclink
          2. region a:266-412 [59100] picpiclink
    4. Regulatory domain of Epac2, domains 1 and 3 [82197]
      duplication: two homologous domains of this fold are separated in the sequence by a DEP domain
      1. Mouse (Mus musculus) [TaxId: 10090] [82198] (1)
        1. 1o7f picpicxref
          1. region a:13-167 [81132] picpiclink
          2. region a:322-445 [81133] picpiclink
    5. HCN pacemaker channel [101993]
      potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel
      1. Mouse (Mus musculus) [TaxId: 10090] [101994] (5)
        1. 1q3e picpic
          complexed with pcg
          1. chain a [95669] picpiclink
          2. chain b [95670] picpiclink
        2. 1q43 picpic
          complexed with cmp
          1. chain a [95777] picpiclink
          2. chain b [95778] picpiclink
        3. 1q5o picpic
          complexed with cmp
          1. chain a [95902] picpiclink
        4. 2q0a picpic
          automatically matched to d1q5oa_
          complexed with pcg; mutant
          1. region a:443-635 [139781] picpiclink
        5. 2q0a picpic
          automatically matched to d1q5oa_
          complexed with pcg; mutant
          1. region b:443-635 [139782] picpiclink
    6. Putative ion channel CnbD [110321]
      1. Mesorhizobium loti [TaxId: 381] [110322] (4)
        SQ Q98GN8 218-350 # mll3241
        1. 1vp6 picpic
          complexed with br, cmp
          1. chain a [113939] picpiclink
          2. chain c [113940] picpiclink
        2. 3cl1 picpic
          automatically matched to d1vp6a_
          complexed with cl, k, pcg, pol
          1. region a:220-349 [156750] picpiclink
        3. 3cl1 picpic
          automatically matched to d1vp6a_
          complexed with cl, k, pcg, pol
          1. region b:220-349 [156751] picpiclink
        4. 1u12 picpic
          complexed with iod, k, so4; mutant
          1. chain a [112946] picpiclink
          2. chain b [112947] picpiclink
    7. Probable cyclic nucleotide-gated ion channel 6 [117323]
      1. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [117324] (1)
        SQ O82226 509-632
        1. 1wgp picpic
          Structural genomics target
          1. chain a [114619] picpiclink
    8. Probable transcription regulator BT4300, N-terminal domain [141639]
      1. Bacteroides thetaiotaomicron [TaxId: 818] [141640] (1)
        SQ Q89ZS6 1-147
        1. 1zyb picpicxref
          complexed with gol
          1. region a:1-147 [125816] picpiclink
    9. Transcriptional regulator TTHA1359, N-terminal domain [141641]
      1. Thermus thermophilus [TaxId: 274] [141642] (1)
        SQ Q5SIL0 6-117
        1. 2coh picpicxref
          complexed with mpd
          1. region a:6-117 [130678] picpiclink
    10. Transcriptional regulator PG0396, N-terminal domain [141643]
      1. Porphyromonas gingivalis [TaxId: 837] [141644] (1)
        SQ Q7MAW7 10-151
        1. 2gau picpicxref
          1. region a:10-151 [134895] picpiclink
    11. Cyclic AMP receptor-like protein Vfr [159312]
      1. Pseudomonas aeruginosa [TaxId: 287] [159313] (1)
        SQ P55222 9-142
        1. 2oz6 picpicxref
          complexed with cmp
          1. region a:9-142 [149104] picpiclink
    12. Chlorophenol reduction protein CprK [159314]
      1. Desulfitobacterium hafniense [TaxId: 49338] [159315] (7)
        SQ Q18R04 3-147! SQ Q18R04 9-147
        1. 3e5u picpicxrefxrefxrefxref
          complexed with 3c4, na, po4; mutant
          1. region a:9-147 [158023] picpiclink
        2. 3e5u picpicxrefxrefxrefxref
          automatically matched to 3E5U A:9-147
          complexed with 3c4, na, po4; mutant
          1. region b:9-147 [158025] picpiclink
        3. 3e5u picpicxrefxrefxrefxref
          automatically matched to 3E5U A:9-147
          complexed with 3c4, na, po4; mutant
          1. region c:9-147 [158027] picpiclink
        4. 3e5u picpicxrefxrefxrefxref
          automatically matched to 3E5U A:9-147
          complexed with 3c4, na, po4; mutant
          1. region d:9-147 [158029] picpiclink
        5. 3e6c picpicxref
          automatically matched to 3E5U A:9-147
          complexed with 3c4; mutant
          1. region c:9-147 [158039] picpiclink
        6. 2h6b picpicxrefxref
          complexed with 3c4, so4
          1. region a:3-147 [147229] picpiclink
        7. 2h6b picpicxrefxref
          automatically matched to 2H6B A:3-147
          complexed with 3c4, so4
          1. region b:9-147 [147231] picpiclink
      2. Desulfitobacterium dehalogenans [TaxId: 36854] [159316] (2)
        SQ Q9LAS2 19-147
        1. 2h6c picpicxrefxref
          1. region a:19-147 [147233] picpiclink
        2. 2h6c picpicxrefxref
          automatically matched to 2H6C A:19-147
          1. region b:19-147 [147235] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk