Structural Classification of Proteins
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Fold: beta-clip

double-stranded ribbon sharply bent in two places; the ribbon ends form incomplete barrel; jelly-roll

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: beta-clip [51268]
    double-stranded ribbon sharply bent in two places; the ribbon ends form incomplete barrel; jelly-roll

Superfamilies:

  1. AFP III-like domain [51269] (1)
    duplication: consists of two structural repeats related by pseudo dyad
    link to SUPERFAMILY database - Superfamily
    1. AFP III-like domain [51270] (5)
      Pfam 01354
      1. Type III antifreeze protein, AFP III [51271]
        1. Ocean pout (Macrozoarces americanus), different isoforms [TaxId: 8199] [51272] (31)
          1. 1hg7 picpic
            complexed with so4
            1. chain a [28280] picpiclink
          2. 1msi picpic
            mutant
            1. chain a [28281] picpiclink
          3. 3msi picpic
            mutant
            1. chain a [28282] picpiclink
          4. 1b7j picpic
            mutant
            1. chain a [28283] picpiclink
          5. 2jia picpic
            mutant
            1. chain a [28286] picpiclink
          6. 7ame picpic
            mutant
            1. chain a [28287] picpiclink
          7. 1jab picpic
            mutant
            1. chain a [28284] picpiclink
          8. 1ame picpic
            mutant
            1. chain a [28285] picpiclink
          9. 1b7i picpic
            mutant
            1. chain a [28288] picpiclink
          10. 1ekl picpic
            mutant
            1. chain a [28289] picpiclink
          11. 2spg picpic
            mutant
            1. chain a [28291] picpiclink
          12. 7msi picpic
            mutant
            1. chain a [28290] picpiclink
          13. 5msi picpic
            mutant
            1. chain a [28293] picpiclink
          14. 4msi picpic
            mutant
            1. chain a [28292] picpiclink
          15. 9ame picpic
            mutant
            1. chain a [28294] picpiclink
          16. 1gzi picpic
            mutant
            1. chain a [28295] picpiclink
          17. 6msi picpic
            mutant
            1. chain a [28296] picpiclink
          18. 6ame picpic
            mutant
            1. chain a [28299] picpiclink
          19. 4ame picpic
            mutant
            1. chain a [28298] picpiclink
          20. 2msi picpic
            mutant
            1. chain a [28297] picpiclink
          21. 2ame picpic
            mutant
            1. chain a [28300] picpiclink
          22. 8ame picpic
            mutant
            1. chain a [28301] picpiclink
          23. 1ops picpic
            1. chain a [28302] picpiclink
          24. 2msj picpic
            mutant
            1. chain a [28303] picpiclink
          25. 1msj picpic
            mutant
            1. chain a [28305] picpiclink
          26. 1b7k picpic
            mutant
            1. chain a [28306] picpiclink
          27. 3ame picpic
            mutant
            1. chain a [28304] picpiclink
          28. 9msi picpic
            mutant
            1. chain a [28307] picpiclink
          29. 8msi picpic
            mutant
            1. chain a [28308] picpiclink
          30. 1kdf picpic
            mutant
            1. chain a [28309] picpiclink
          31. 1kde picpic
            mutant
            1. chain a [28310] picpiclink
        2. Antarctic eel pout (Lycodichthys dearborni), RD1 isoform [TaxId: 8201] [89424] (1)
          1. 1ucs picpic
            1. chain a [88466] picpiclink
        3. Antarctic eel pout (Austrolycichthys brachycephalus) and (Lycodichthys dearborni), RD3 isoform [TaxId: 36221] [51273] (4)
          duplication: intramolecular dimer
          1. 1c8a picpic
            1. region a:1-68 [28312] picpiclink
            2. region a:69-134 [28313] picpiclink
          2. 1c89 picpic
            1. region a:1-68 [28314] picpiclink
            2. region a:69-134 [28315] picpiclink
          3. 3nla picpic
            N-Terminal domain with a linker portion
            1. chain a [28316] picpiclink
          4. 3rdn picpic
            N-Terminal domain with a linker portion
            1. chain a [28311] picpiclink
      2. Spore coat polysaccharide biosynthesis protein SpsE, C-terminal domain [110328]
        1. Bacillus subtilis [TaxId: 1423] [110329] (1)
          SQ P39625
          1. 1vli picpicxref
            Structural genomics target
            complexed with zn
            1. region a:297-368 [108830] picpiclink
      3. Capsule biosynthesis protein SiaC, C-terminal domain [117330]
        1. Neisseria meningitidis [TaxId: 487] [117331] (4)
          SQ Q57265
          1. 2zdr picpicxref
            automatically matched to d1xuua1
            complexed with mg, mpd
            1. region a:282-349 [154398] picpiclink
          2. 3cm4 picpicxref
            automatically matched to d1xuua1
            complexed with mlt
            1. region a:282-349 [156770] picpiclink
          3. 1xuu picpicxref
            complexed with mlt, mn
            1. region a:282-349 [116067] picpiclink
          4. 1xuz picpicxref
            complexed with mmn, mn, pep
            1. region a:282-349 [116072] picpiclink
  2. SET domain [82199] (3)
    duplication: the core is composed of two structural repeats similar to (circularly permuted) repeats of AFPIII
    also contains a substrate-binding alpha+beta subdomain inserted in the core
    link to SUPERFAMILY database - Superfamily
    1. Histone lysine methyltransferases [82200] (3)
      contains metal-binding preSET and postSET domains
      1. Dim-5 [82201]
        1. Fungus (Neurospora crassa) [TaxId: 5141] [82202] (2)
          1. 1ml9 picpic
            complexed with zn
            1. chain a [79282] picpiclink
          2. 1peg picpic
            complexed with histone H3 peptide
            complexed with sah, zn
            1. chain a [94598] picpiclink
            2. chain b [94599] picpiclink
      2. SET domain of Clr4 [82203]
        ortholog of Dim-5
        1. Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896] [82204] (2)
          1. 1mvh picpic
            complexed with ni, so4, zn
            1. chain a [79500] picpiclink
          2. 1mvx picpic
            complexed with ni, so4, zn
            1. chain a [79546] picpiclink
      3. Histone H3 K4-specific methyltransferase SET7/9 catalytic domain [82205]
        1. Human (Homo sapiens) [TaxId: 9606] [82206] (11)
          SQ Q8WTS6 52-336
          1. 2f69 picpicxref
            automatically matched to d1o9sa2
            complexed with ace, mlz, sah
            1. region a:194-364 [133036] picpiclink
          2. 3cbp picpicxref
            automatically matched to d1o9sa2
            complexed with bme, gol, sfg
            1. region a:194-363 [156166] picpiclink
          3. 3cbo picpicxref
            automatically matched to d1o9sa2
            complexed with bme, gol, mlz, sah
            1. region a:194-364 [156164] picpiclink
          4. 3cbm picpicxref
            automatically matched to d1o9sa2
            complexed with bme, mlz, sah
            1. region a:194-364 [156162] picpiclink
          5. 1h3i picpicxref
            complexed with mg
            1. region a:194-344 [76636] picpiclink
            2. region b:194-344 [76638] picpiclink
          6. 1mt6 picpicxref
            complexed with sah
            1. region a:194-337 [79447] picpiclink
          7. 1n6a picpicxref
            complexed with mse, sam
            1. region a:194-361 [80122] picpiclink
          8. 1xqh picpicxref
            complexed with mlz, sah
            1. region a:194-366 [115847] picpiclink
            2. region e:194-366 [115849] picpiclink
          9. 1o9s picpicxref
            complexed with mlz, sah
            1. region a:194-366 [81250] picpiclink
            2. region b:194-366 [81252] picpiclink
          10. 1n6c picpicxref
            complexed with sam
            1. region a:194-363 [80124] picpiclink
          11. 1muf picpicxref
            complexed with mse
            1. region a:194-337 [79484] picpiclink
    2. Viral histone H3 Lysine 27 Methyltransferase [82207] (1)
      consists of SET domain only; dimeric
      1. Viral histone H3 Lysine 27 Methyltransferase [82208]
        1. Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506] [82209] (3)
          1. 2g46 picpic
            automatically matched to d1n3ja_
            complexed with mlz, sah
            1. region a:1-119 [134580] picpiclink
          2. 2g46 picpic
            automatically matched to d1n3ja_
            complexed with mlz, sah
            1. region b:1-119 [134581] picpiclink
          3. 1n3j picpic
            1. chain a [79963] picpiclink
            2. chain b [79964] picpiclink
    3. RuBisCo LSMT catalytic domain [82210] (1)
      1. RuBisCo LSMT catalytic domain [82211]
        1. Garden pea (Pisum sativum) [TaxId: 3888] [82212] (15)
          1. 2h2j picpicxrefxrefxref
            automatically matched to d1ozvb2
            complexed with mlz, sfg
            1. region a:50-310 [136009] picpiclink
          2. 2h2j picpicxrefxrefxref
            automatically matched to d1ozvb2
            complexed with mlz, sfg
            1. region b:50-310 [136011] picpiclink
          3. 2h2j picpicxrefxrefxref
            automatically matched to d1ozvb2
            complexed with mlz, sfg
            1. region c:50-310 [136013] picpiclink
          4. 1p0y picpicxref
            complexed with mlz, sah
            1. region a:49-310 [87655] picpiclink
            2. region b:48-310 [87657] picpiclink
            3. region c:49-310 [87659] picpiclink
          5. 1mlv picpicxref
            complexed with epe, sah
            1. region a:50-310 [79284] picpiclink
            2. region b:49-310 [79286] picpiclink
            3. region c:50-310 [79288] picpiclink
          6. 1ozv picpicxref
            complexed with lys, sah
            1. region a:50-310 [87633] picpiclink
            2. region b:48-310 [87635] picpiclink
            3. region c:49-310 [87637] picpiclink
          7. 2h23 picpicxrefxrefxref
            automatically matched to d1ozvb2
            complexed with m3l, sah
            1. region a:50-310 [135983] picpiclink
          8. 2h23 picpicxrefxrefxref
            automatically matched to d1ozvb2
            complexed with m3l, sah
            1. region b:50-310 [135985] picpiclink
          9. 2h23 picpicxrefxrefxref
            automatically matched to d1ozvb2
            complexed with m3l, sah
            1. region c:50-310 [135987] picpiclink
          10. 2h21 picpicxrefxrefxref
            automatically matched to d1ozvb2
            complexed with sam
            1. region a:50-310 [135977] picpiclink
          11. 2h21 picpicxrefxrefxref
            automatically matched to d1ozvb2
            complexed with sam
            1. region b:50-310 [135979] picpiclink
          12. 2h21 picpicxrefxrefxref
            automatically matched to d1ozvb2
            complexed with sam
            1. region c:50-310 [135981] picpiclink
          13. 2h2e picpicxrefxrefxref
            automatically matched to d1ozvb2
            complexed with lys, sa8
            1. region a:50-310 [135999] picpiclink
          14. 2h2e picpicxrefxrefxref
            automatically matched to d1ozvb2
            complexed with lys, sa8
            1. region b:50-310 [136001] picpiclink
          15. 2h2e picpicxrefxrefxref
            automatically matched to d1ozvb2
            complexed with lys, sa8
            1. region c:50-310 [136003] picpiclink
  3. Head decoration protein D (gpD, major capsid protein D) [51274] (1)
    link to SUPERFAMILY database - Superfamily
    1. Head decoration protein D (gpD, major capsid protein D) [51275] (2)
      1. Head decoration protein D (gpD, major capsid protein D) [51276]
        1. Bacteriophage lambda [TaxId: 10710] [51277] (3)
          SQ P03712
          1. 1c5e picpic
            complexed with gol
            1. chain a [28317] picpiclink
            2. chain b [28318] picpiclink
            3. chain c [28319] picpiclink
          2. 1tcz picpic
            1. chain a [106759] picpiclink
            2. chain b [106760] picpiclink
            3. chain c [106761] picpiclink
            4. chain d [106762] picpiclink
            5. chain e [106763] picpiclink
            6. chain f [106764] picpiclink
          3. 1vd0 picpic
            automatically matched to d1c5ea_
            1. region a:15-109 [119990] picpiclink
        2. Bacteriophage P21 [TaxId: 10711] [117332] (3)
          SQ P36275
          1. 1td4 picpic
            1. chain a [112389] picpiclink
          2. 1td0 picpic
            1. chain a [112382] picpiclink
            2. chain b [112383] picpiclink
            3. chain c [112384] picpiclink
            4. chain d [112385] picpiclink
          3. 1td3 picpic
            1. chain a [112386] picpiclink
            2. chain b [112387] picpiclink
            3. chain c [112388] picpiclink
  4. Urease, beta-subunit [51278] (1)
    link to SUPERFAMILY database - Superfamily
    1. Urease, beta-subunit [51279] (3)
      1. Urease, beta-subunit [51280]
        1. Klebsiella aerogenes [TaxId: 28451] [51281] (27)
          1. 1ejx picpicxrefxrefxref
            complexed with kcx, ni
            1. chain b [83183] picpiclink
          2. 1ejr picpicxrefxrefxref
            complexed with ni; mutant
            1. chain b [28320] picpiclink
          3. 1fwc picpicxrefxrefxref
            complexed with ni; mutant
            1. chain b [28324] picpiclink
          4. 1ejt picpicxrefxrefxref
            complexed with ni; mutant
            1. chain b [28321] picpiclink
          5. 1fwd picpicxrefxrefxref
            complexed with ni; mutant
            1. chain b [28325] picpiclink
          6. 1fwb picpicxrefxrefxref
            complexed with ni; mutant
            1. chain b [28323] picpiclink
          7. 1fwa picpicxrefxrefxref
            complexed with co3, ni; mutant
            1. chain b [28322] picpiclink
          8. 1fwi picpicxrefxrefxref
            complexed with ni; mutant
            1. chain b [28327] picpiclink
          9. 1fwf picpicxrefxrefxref
            complexed with ni; mutant
            1. chain b [28326] picpiclink
          10. 1ejw picpicxrefxrefxref
            complexed with ni
            1. chain b [90454] picpiclink
          11. 1fwg picpicxrefxrefxref
            complexed with ni; mutant
            1. chain b [28330] picpiclink
          12. 2kau picpicxrefxrefxref
            CASP1
            complexed with cbx, ni
            1. chain b [28328] picpiclink
          13. 1fwh picpicxrefxrefxref
            complexed with ni; mutant
            1. chain b [28329] picpiclink
          14. 1eju picpicxrefxrefxref
            complexed with ni; mutant
            1. chain b [28333] picpiclink
          15. 1ejs picpicxrefxrefxref
            complexed with ni; mutant
            1. chain b [28332] picpiclink
          16. 1a5m picpicxrefxrefxref
            mutant
            1. chain b [28331] picpiclink
          17. 1fwe picpicxrefxrefxref
            complexed with hae, ni; mutant
            1. chain b [28334] picpiclink
          18. 1fwj picpicxrefxrefxref
            complexed with ni
            1. chain b [28335] picpiclink
          19. 1a5k picpicxrefxrefxref
            mutant
            1. chain b [28336] picpiclink
          20. 1a5l picpicxrefxrefxref
            mutant
            1. chain b [28337] picpiclink
          21. 1a5n picpicxrefxrefxref
            complexed with fmt, ni; mutant
            1. chain b [28338] picpiclink
          22. 1ejv picpicxrefxrefxref
            complexed with ni; mutant
            1. chain b [28340] picpiclink
          23. 1kra picpicxrefxrefxref
            1. chain b [28339] picpiclink
          24. 1ef2 picpicxrefxrefxref
            complexed with mn
            1. chain b [28341] picpiclink
          25. 1krb picpicxrefxrefxref
            complexed with co2, ni; mutant
            1. chain b [28342] picpiclink
          26. 1krc picpicxrefxrefxref
            complexed with co2, ni; mutant
            1. chain b [28343] picpiclink
          27. 1a5o picpicxrefxrefxref
            complexed with fmt, ni; mutant
            1. chain b [28344] picpiclink
        2. Bacillus pasteurii [TaxId: 1474] [51282] (6)
          1. 4ubp picpicxrefxrefxref
            complexed with ace, hae, ni
            1. chain b [28345] picpiclink
          2. 1ubp picpicxrefxrefxref
            complexed with bme, cbx, ni
            1. chain b [28346] picpiclink
          3. 1ie7 picpicxrefxrefxref
            complexed with ni, po4
            1. chain b [62314] picpiclink
          4. 2ubp picpicxrefxrefxref
            1. chain b [28347] picpiclink
          5. 3ubp picpicxrefxrefxref
            1. chain b [28348] picpiclink
          6. 1s3t picpicxrefxrefxref
            complexed with bo3, ni, so4
            1. chain b [98461] picpiclink
        3. Helicobacter pylori [TaxId: 210] [69367] (2)
          fused with gamma subunit
          1. 1e9y picpicxrefxrefxref
            complexed with hae, ni
            1. region a:106-238 [64846] picpiclink
          2. 1e9z picpicxrefxrefxref
            complexed with ni
            1. region a:106-238 [64850] picpiclink
  5. MoeA C-terminal domain-like [63867] (1)
    link to SUPERFAMILY database - Superfamily
    1. MoeA C-terminal domain-like [63868] (5)
      1. Molybdenum cofactor biosynthesis protein MoeA, C-terminal domain [63869]
        1. Escherichia coli [TaxId: 562] [63870] (27)
          1. 2nqr picpicxrefxrefxrefxref
            automatically matched to d1g8la1
            complexed with gol; mutant
            1. region a:327-409 [138490] picpiclink
          2. 2nqr picpicxrefxrefxrefxref
            automatically matched to d1g8la1
            complexed with gol; mutant
            1. region b:327-409 [138493] picpiclink
          3. 1g8l picpicxrefxref
            complexed with gol
            1. region a:327-409 [60365] picpiclink
            2. region b:327-409 [60368] picpiclink
          4. 1fc5 picpicxrefxref
            complexed with mo6
            1. region a:327-408 [59762] picpiclink
            2. region b:327-408 [59765] picpiclink
          5. 2nqn picpicxrefxrefxrefxref
            automatically matched to d1g8la1
            complexed with gol; mutant
            1. region a:327-409 [138467] picpiclink
          6. 2nqn picpicxrefxrefxrefxref
            automatically matched to d1g8la1
            complexed with gol; mutant
            1. region b:327-409 [138470] picpiclink
          7. 2nqq picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1g8la1
            complexed with gol; mutant
            1. region a:327-409 [138478] picpiclink
          8. 2nqq picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1g8la1
            complexed with gol; mutant
            1. region b:327-409 [138481] picpiclink
          9. 2nqq picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1g8la1
            complexed with gol; mutant
            1. region c:327-409 [138484] picpiclink
          10. 2nqq picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1g8la1
            complexed with gol; mutant
            1. region d:327-409 [138487] picpiclink
          11. 2nro picpicxrefxrefxrefxref
            automatically matched to d1g8la1
            mutant
            1. region a:327-409 [138527] picpiclink
          12. 2nro picpicxrefxrefxrefxref
            automatically matched to d1g8la1
            mutant
            1. region b:327-409 [138530] picpiclink
          13. 2nqs picpicxrefxrefxrefxref
            automatically matched to d1g8la1
            complexed with gol; mutant
            1. region a:327-409 [138496] picpiclink
          14. 2nqs picpicxrefxrefxrefxref
            automatically matched to d1g8la1
            complexed with gol; mutant
            1. region b:327-409 [138499] picpiclink
          15. 1g8r picpicxrefxref
            complexed with gol
            1. region a:327-409 [60377] picpiclink
            2. region b:327-409 [60380] picpiclink
          16. 2nqu picpicxrefxrefxrefxref
            automatically matched to d1g8la1
            complexed with gol; mutant
            1. region a:327-409 [138502] picpiclink
          17. 2nqu picpicxrefxrefxrefxref
            automatically matched to d1g8la1
            complexed with gol; mutant
            1. region b:327-409 [138505] picpiclink
          18. 2nqk picpicxrefxrefxrefxref
            automatically matched to d1g8la1
            mutant
            1. region a:327-409 [138455] picpiclink
          19. 2nqk picpicxrefxrefxrefxref
            automatically matched to d1g8la1
            mutant
            1. region b:327-409 [138458] picpiclink
          20. 2nrp picpicxrefxrefxrefxref
            automatically matched to d1g8la1
            complexed with gol; mutant
            1. region a:327-409 [138533] picpiclink
          21. 2nrp picpicxrefxrefxrefxref
            automatically matched to d1g8la1
            complexed with gol; mutant
            1. region b:327-409 [138536] picpiclink
          22. 2nrs picpicxrefxrefxrefxref
            automatically matched to d1g8la1
            mutant
            1. region a:327-409 [138539] picpiclink
          23. 2nrs picpicxrefxrefxrefxref
            automatically matched to d1g8la1
            mutant
            1. region b:327-409 [138542] picpiclink
          24. 2nqv picpicxrefxrefxrefxref
            automatically matched to d1g8la1
            complexed with gol; mutant
            1. region a:327-409 [138508] picpiclink
          25. 2nqv picpicxrefxrefxrefxref
            automatically matched to d1g8la1
            complexed with gol; mutant
            1. region b:327-409 [138511] picpiclink
          26. 2nqm picpicxrefxrefxrefxref
            automatically matched to d1g8la1
            mutant
            1. region a:327-409 [138461] picpiclink
          27. 2nqm picpicxrefxrefxrefxref
            automatically matched to d1g8la1
            mutant
            1. region b:327-409 [138464] picpiclink
        2. Archaeon Pyrococcus horikoshii, PH0582 [TaxId: 53953] [102009] (1)
          1. 1uz5 picpicxrefxref
            complexed with so4
            1. region a:329-402 [100217] picpiclink
        3. Pyrococcus furiosus [TaxId: 2261] [117333] (1)
          SQ Q8U034
          1. 1xi8 picpicxrefxref
            Structural genomics target
            1. region a:325-396 [115349] picpiclink
            2. region b:325-396 [115352] picpiclink
        4. Pyrococcus horikoshii, PH1647 [TaxId: 53953] [117334] (1)
          SQ O59354; PH1647
          1. 1wu2 picpicxrefxref
            Structural genomics target
            1. region a:325-396 [114884] picpiclink
            2. region b:325-396 [114887] picpiclink
      2. Gephyrin, C-terminal domain [110330]
        1. Rat (Rattus norvegicus) [TaxId: 10116] [110331] (4)
          SQ Q03555 350-768 # structure on the N-terminal domain (1-201) is also known (1ihc; scop_sp 64101)
          1. 2fts picpicxrefxref
            automatically matched to d1t3ea1
            1. region a:654-736 [134079] picpiclink
          2. 2fu3 picpicxrefxrefxrefxref
            automatically matched to d1t3ea1
            1. region a:654-736 [134096] picpiclink
          3. 2fu3 picpicxrefxrefxrefxref
            automatically matched to d1t3ea1
            1. region b:654-736 [134099] picpiclink
          4. 1t3e picpicxrefxref
            complexed with so4
            1. region a:654-736 [106348] picpiclink
            2. region b:654-736 [106351] picpiclink
  6. dUTPase-like [51283] (1)
    forms tight trimer through an additional beta-sheet in each subunit
    subunit beta-sheets are orthogonally packed around the three-fold axis
    link to SUPERFAMILY database - Superfamily
    1. dUTPase-like [51284] (9)
      1. Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) [51285]
        1. Escherichia coli [TaxId: 562] [51286] (10)
          SQ P06968
          1. 1euw picpic
            complexed with emc, gol
            1. chain a [28349] picpiclink
          2. 1eu5 picpic
            complexed with gol
            1. chain a [28350] picpiclink
          3. 1seh picpic
            complexed with trs, ump
            1. chain a [105454] picpiclink
          4. 1rnj picpic
            complexed with dup, mg, trs; mutant
            1. chain a [105021] picpiclink
          5. 2hrm picpic
            automatically matched to d1rn8a_
            complexed with edo, uc5
            1. region a:1-137 [147378] picpiclink
          6. 2hr6 picpic
            automatically matched to d1rn8a_
            complexed with dud, edo, mn
            1. region a:1-137 [147375] picpiclink
          7. 1rn8 picpic
            complexed with act, dup, mg, trs
            1. chain a [105020] picpiclink
          8. 1dup picpic
            1. chain a [28351] picpiclink
          9. 1syl picpic
            complexed with dut, mg, trs; mutant
            1. chain a [106117] picpiclink
          10. 1dud picpic
            complexed with dud
            1. chain a [28352] picpiclink
        2. Mycobacterium tuberculosis, rv2697c [TaxId: 1773] [82213] (8)
          1. 1six picpic
            complexed with dup, mg, trs
            1. chain a [98892] picpiclink
          2. 2py4 picpic
            automatically matched to d1sixa_
            complexed with dup, mg, trs
            1. region a:2-144 [139775] picpiclink
          3. 1sjn picpic
            complexed with dup, mg, no3, trs
            1. chain a [98896] picpiclink
            2. chain b [98897] picpiclink
            3. chain c [98898] picpiclink
          4. 1snf picpic
            complexed with mg, no3, trs, ump
            1. chain a [98927] picpiclink
            2. chain b [98928] picpiclink
            3. chain c [98929] picpiclink
          5. 1mq7 picpic
            structural genomics
            CASP5
            complexed with trs
            1. chain a [79404] picpiclink
          6. 1smc picpic
            complexed with dut, no3, trs
            1. chain a [98920] picpiclink
            2. chain b [98921] picpiclink
            3. chain c [98922] picpiclink
          7. 1slh picpic
            complexed with dud, mg, trs
            1. chain a [98910] picpiclink
            2. chain b [98911] picpiclink
            3. chain c [98912] picpiclink
          8. 1sm8 picpic
            complexed with cr, dut, no3, trs
            1. chain a [98917] picpiclink
            2. chain b [98918] picpiclink
            3. chain c [98919] picpiclink
        3. Human (Homo sapiens) [TaxId: 9606] [102010] (11)
          1. 3ehw picpic
            automatically matched to d1q5hc_
            complexed with dup, mg
            1. region a:24-159 [158154] picpiclink
          2. 3ehw picpic
            automatically matched to d1q5hc_
            complexed with dup, mg
            1. region b:25-159 [158155] picpiclink
          3. 3ehw picpic
            automatically matched to d1q5hc_
            complexed with dup, mg
            1. region c:25-159 [158156] picpiclink
          4. 3ehw picpic
            automatically matched to d1q5hc_
            complexed with dup, mg
            1. region x:25-159 [158157] picpiclink
          5. 3ehw picpic
            automatically matched to d1q5hc_
            complexed with dup, mg
            1. region y:25-159 [158158] picpiclink
          6. 3ehw picpic
            automatically matched to d1q5hc_
            complexed with dup, mg
            1. region z:25-159 [158159] picpiclink
          7. 1q5h picpic
            complexed with dud, mg
            1. chain a [95893] picpiclink
            2. chain b [95894] picpiclink
            3. chain c [95895] picpiclink
          8. 1q5u picpic
            1. chain x [95934] picpiclink
            2. chain y [95935] picpiclink
            3. chain z [95936] picpiclink
          9. 2hqu picpic
            automatically matched to d1q5hc_
            complexed with cl, dup, mg
            1. region a:24-159 [147361] picpiclink
          10. 2hqu picpic
            automatically matched to d1q5hc_
            complexed with cl, dup, mg
            1. region b:24-159 [147362] picpiclink
          11. 2hqu picpic
            automatically matched to d1q5hc_
            complexed with cl, dup, mg
            1. region c:24-158 [147363] picpiclink
        4. Feline immunodeficiency virus [TaxId: 11673] [51287] (8)
          1. 1f7d picpic
            complexed with mg
            1. chain a [28353] picpiclink
            2. chain b [28354] picpiclink
          2. 1dut picpic
            complexed with mg
            1. chain a [28355] picpiclink
            2. chain b [28356] picpiclink
          3. 1f7o picpic
            1. chain a [28357] picpiclink
            2. chain b [28358] picpiclink
            3. chain c [28359] picpiclink
          4. 1f7p picpic
            complexed with udp
            1. chain a [28363] picpiclink
            2. chain b [28364] picpiclink
            3. chain c [28365] picpiclink
          5. 1f7r picpic
            complexed with mg, udp
            1. chain a [28360] picpiclink
          6. 1f7q picpic
            complexed with dut
            1. chain a [28368] picpiclink
            2. chain b [28369] picpiclink
            3. chain c [28370] picpiclink
          7. 1f7k picpic
            complexed with mg, ump
            1. chain a [28361] picpiclink
            2. chain b [28362] picpiclink
          8. 1f7n picpic
            complexed with mg, ump
            1. chain a [28366] picpiclink
            2. chain b [28367] picpiclink
        5. Equine infectious anemia virus [TaxId: 11665] [51288] (2)
          1. 1dun picpic
            1. chain a [28371] picpiclink
          2. 1duc picpic
            complexed with dud, sr
            1. chain a [28372] picpiclink
        6. Plasmodium falciparum [TaxId: 5833] [141654] (3)
          SQ Q8II92 1-159
          1. 1vyq picpic
            complexed with dux
            1. region a:1-159 [120548] picpiclink
          2. 1vyq picpic
            automatically matched to 1VYQ A:1-159
            complexed with dux
            1. region b:1-154 [120549] picpiclink
          3. 1vyq picpic
            automatically matched to 1VYQ A:1-159
            complexed with dux
            1. region c:1-155 [120550] picpiclink
      2. Bifunctional dCTP deaminase/dUTPase [89425]
        elaborated fold with additional structures
        1. Archaeon Methanococcus jannaschii [TaxId: 2190] [89426] (5)
          synonym: Methanocaldococcus jannaschii
          1. 1pkh picpic
            complexed with egl
            1. chain a [94832] picpiclink
            2. chain b [94833] picpiclink
          2. 1pkk picpic
            complexed with dcp, egl
            1. chain a [94836] picpiclink
            2. chain b [94837] picpiclink
          3. 1ogh picpic
            1. chain a [86994] picpiclink
            2. chain b [86995] picpiclink
          4. 1pkj picpic
            complexed with dut, egl
            1. chain a [94834] picpiclink
            2. chain b [94835] picpiclink
          5. 2hxb picpic
            automatically matched to d1pkha_
            1. region a:1-175 [147431] picpiclink
      3. Deoxycytidine triphosphate deaminase (dCTP deaminase) [117335]
        1. Escherichia coli [TaxId: 562] [117336] (3)
          SQ P28248
          1. 1xs1 picpic
            complexed with dut, mg
            1. chain a [115892] picpiclink
            2. chain b [115893] picpiclink
            3. chain c [115894] picpiclink
            4. chain d [115895] picpiclink
            5. chain e [115896] picpiclink
            6. chain f [115897] picpiclink
          2. 1xs6 picpic
            complexed with dut, mg; mutant
            1. chain a [115913] picpiclink
            2. chain b [115914] picpiclink
            3. chain c [115915] picpiclink
            4. chain d [115916] picpiclink
            5. chain e [115917] picpiclink
            6. chain f [115918] picpiclink
          3. 1xs4 picpic
            complexed with dcp, mg; mutant
            1. chain a [115906] picpiclink
            2. chain b [115907] picpiclink
            3. chain c [115908] picpiclink
            4. chain d [115909] picpiclink
            5. chain e [115910] picpiclink
            6. chain f [115911] picpiclink
      4. Monomeric viral dUTPase [141655]
        related to the trimeric dUTPase domain by domain duplication, fusion and partial deletion; retains only one of the three ancestral active sites
        1. Epstein-barr virus [TaxId: 10376] [141656] (4)
          SQ P03195 121-256! SQ P03195 4-116
          Human herpesvirus 4
          1. 2bsy picpic
            Domain 1
            complexed with so4, ump
            1. region a:4-116 [129129] picpiclink
          2. 2bsy picpic
            includes domain 2, rudiment domain 3 and C-terminal arm
            complexed with so4, ump
            1. region a:121-256 [129130] picpiclink
          3. 2bt1 picpic
            automatically matched to 2BSY A:4-116
            complexed with dup, mg
            1. region a:4-116 [129135] picpiclink
          4. 2bt1 picpic
            automatically matched to 2BSY A:121-256
            complexed with dup, mg
            1. region a:121-256 [129136] picpiclink
  7. Tlp20, baculovirus telokin-like protein [51289] (1)
    similar to dUTPase in fold and trimeric assembly
    link to SUPERFAMILY database - Superfamily
    1. Tlp20, baculovirus telokin-like protein [51290] (1)
      1. Tlp20, baculovirus telokin-like protein [51291]
        1. AcMNPV (Autographa californica nuclear polyhedrosis virus) [TaxId: 46015] [51292] (1)
          1. 1tul picpic
            1. chain a [28373] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk