Structural Classification of Proteins
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Family: Tymoviridae-like VP

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632]
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. Superfamily: Positive stranded ssRNA viruses [88633]
    link to SUPERFAMILY database - Superfamily
  5. Family: Tymoviridae-like VP [88641]

Protein Domains:

  1. Tymovirus coat protein [88642]
    1. PHMV (Physalis mottle virus) [TaxId: 72539] [49642] (2)
      1. 1e57 picpic
        1. chain a [59259] picpiclink
        2. chain b [59260] picpiclink
        3. chain c [59261] picpiclink
      2. 1qjz picpic
        1. chain a [23314] picpiclink
        2. chain b [23315] picpiclink
        3. chain c [23316] picpiclink
    2. DYMV (Desmodium yellow mottle tymovirus) [TaxId: 70821] [49644] (1)
      1. 1ddl picpic
        1. chain a [23317] picpiclink
        2. chain b [23318] picpiclink
        3. chain c [23319] picpiclink
    3. TYMV (Turnip yellow mosaic virus) [TaxId: 12154] [49640] (2)
      SQ P03608
      1. 1auy picpic
        1. chain a [23311] picpiclink
        2. chain b [23312] picpiclink
        3. chain c [23313] picpiclink
      2. 1w39 picpic
        1. chain a [109146] picpiclink
        2. chain b [109147] picpiclink
        3. chain c [109148] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk