Structural Classification of Proteins
home mail help root up expand collapse

Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins)

sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632]
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

Superfamilies:

  1. Nucleoplasmin-like core domain [69203] (1) picpic
    oligomerizes into a pentameric ring structure
    link to SUPERFAMILY database - Superfamily
  2. Positive stranded ssRNA viruses [88633] (9) picpic
    link to SUPERFAMILY database - Superfamily
  3. ssDNA viruses [88645] (3) picpic
    link to SUPERFAMILY database - Superfamily
  4. Group I dsDNA viruses [88648] (1) picpic
    link to SUPERFAMILY database - Superfamily
  5. Group II dsDNA viruses VP [49749] (3) picpic
    duplication: consists of two domains of this fold packed together like the nucleoplasmin subunits
    trimeric; in the trimers, the domains are arranged around pseudo six-fold axis
    link to SUPERFAMILY database - Superfamily
  6. Satellite viruses [88650] (1) picpic
    link to SUPERFAMILY database - Superfamily
  7. PHM/PNGase F [49742] (2) picpic
    members of this superfamily bind peptide substrates
    duplication: consists of two domains of this fold packed together like the adjacent nucleoplasmin subunits
    link to SUPERFAMILY database - Superfamily
Enter search key:
MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk