Structural Classification of Proteins
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Superfamily: ssDNA viruses

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632]
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. Superfamily: ssDNA viruses [88645]
    link to SUPERFAMILY database - Superfamily

Families:

  1. Microviridae-like VP [49612] (3)
    1. Microvirus capsid proteins [49613]
      include capsid protein F and spike protein G
      1. Bacteriophage phi-X174 [TaxId: 10847] [49614] (4)
        1. 2bpa picpic
          1. chain 1 [23272] picpiclink
          2. chain 2 [23273] picpiclink
        2. 1al0 picpicxref
          1. chain f [23274] picpiclink
          2. chain g [23275] picpiclink
        3. 1cd3 picpicxref
          1. chain f [23276] picpiclink
          2. chain g [23277] picpiclink
        4. 1kvp picpic
          chimera with a fragment 1-71 of vp1 from spiroplasma virus SPV4
          1. chain a [23278] picpiclink
      2. Bacteriophage G4 [TaxId: 10843] [49615] (1)
        1. 1gff picpic
          mutant
          1. chain 1 [23279] picpiclink
          2. chain 2 [23280] picpiclink
      3. Bacteriophage alpha3 [TaxId: 10849] [82008] (2)
        1. 1m06 picpic
          complexed with c
          1. chain f [78326] picpiclink
          2. chain g [78327] picpiclink
        2. 1rb8 picpic
          complexed with c
          1. chain f [97279] picpiclink
          2. chain g [97280] picpiclink
  2. Parvoviridae-like VP [88646] (7)
    1. Parvovirus (panleukopenia virus) capsid protein [49661]
      1. Feline panleukopenia virus, strain b [TaxId: 10786] [49689] (1)
        1. 1fpv picpic
          1. chain a [23579] picpiclink
      2. Canine parvovirus [TaxId: 10788] [49662] (7)
        1. 1c8d picpic
          complexed with ca
          1. chain a [23375] picpiclink
        2. 1p5w picpic
          complexed with mg; mutant
          1. chain a [94150] picpiclink
        3. 2cas picpic
          1. chain a [23376] picpiclink
        4. 1p5y picpic
          mutant
          1. chain a [94152] picpiclink
        5. 4dpv picpic
          protein/DNA complex; complexed with mg
          1. chain z [23377] picpiclink
        6. 1ijs picpic
          protein/DNA complex; mutant
          1. chain p [23379] picpiclink
        7. 1c8h picpic
          complexed with ca; mutant
          1. chain a [23378] picpiclink
      3. Feline parvovirus [TaxId: 10785] [49663] (3)
        1. 1c8g picpic
          complexed with ca
          1. chain a [23380] picpiclink
        2. 1c8f picpic
          complexed with ca
          1. chain a [23381] picpiclink
        3. 1c8e picpic
          1. chain a [23382] picpiclink
      4. Porcine parvovirus [TaxId: 10796] [69201] (1)
        1. 1k3v picpic
          1. chain a [68122] picpiclink
      5. Murine minute virus, strain i [TaxId: 10794] [49665] (2)
        1. 1mvm picpic
          protein/DNA complex
          1. chain a [23383] picpiclink
        2. 1z1c picpic
          automatically matched to d1mvma_
          complexed with ca, d5m
          1. region a:39-587 [124350] picpiclink
      6. Human parvovirus B19 [TaxId: 10798] [110116] (1)
        SQ Q9JGS0 246-781
        1. 1s58 picpic
          1. chain a [105262] picpiclink
    2. Dependovirus capsid protein [74887]
      1. Adeno-associated virus, aav-2 [TaxId: 272636] [74888] (1)
        a vector for human genome therapy
        1. 1lp3 picpic
          1. chain a [74169] picpiclink
  3. Densovirinae-like VP [88647] (1)
    1. Densovirus capsid protein [49652]
      1. Galleria mellonella densovirus [TaxId: 37138] [49653] (1)
        1. 1dnv picpic
          1. chain a [23332] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk