Structural Classification of Proteins
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Family: Papovaviridae-like VP

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632]
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. Superfamily: Group I dsDNA viruses [88648]
    link to SUPERFAMILY database - Superfamily
  5. Family: Papovaviridae-like VP [88649]

Protein Domains:

  1. Polyomavirus coat proteins [49657]
    1. Murine polyomavirus, strain small-plaque 16 [TaxId: 10634] [49658] (5)
      1. 1vps picpic
        complexed with gal, nag, sia
        1. chain a [23336] picpiclink
        2. chain b [23337] picpiclink
        3. chain c [23338] picpiclink
        4. chain d [23339] picpiclink
        5. chain e [23340] picpiclink
      2. 1vpn picpic
        1. chain a [23341] picpiclink
        2. chain b [23342] picpiclink
        3. chain c [23343] picpiclink
        4. chain d [23344] picpiclink
        5. chain e [23345] picpiclink
      3. 1cn3 picpic
        1. chain a [23346] picpiclink
        2. chain b [23347] picpiclink
        3. chain c [23348] picpiclink
        4. chain d [23349] picpiclink
        5. chain e [23350] picpiclink
      4. 1sid picpic
        complexed with gal, glc, sia
        1. chain a [23351] picpiclink
        2. chain b [23352] picpiclink
        3. chain c [23353] picpiclink
        4. chain d [23354] picpiclink
        5. chain e [23355] picpiclink
        6. chain f [23356] picpiclink
      5. 1sie picpic
        complexed with gal, nag, sia
        1. chain a [23357] picpiclink
        2. chain b [23358] picpiclink
        3. chain c [23359] picpiclink
        4. chain d [23360] picpiclink
        5. chain e [23361] picpiclink
        6. chain f [23362] picpiclink
    2. Simian virus 40, Sv40 [TaxId: 10633] [49691] (1)
      1. 1sva picpic
        1. chain 1 [23580] picpiclink
        2. chain 2 [23581] picpiclink
        3. chain 3 [23582] picpiclink
        4. chain 4 [23583] picpiclink
        5. chain 5 [23584] picpiclink
        6. chain 6 [23585] picpiclink
  2. Papillomavirus L1 protein [49692]
    1. Human papillomavirus type 16 [TaxId: 333760] [49693] (1)
      1. 1dzl picpic
        mutant
        1. chain a [23586] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk