Structural Classification of Proteins
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Fold: Galactose-binding domain-like

sandwich; 9 strands in 2 sheets; jelly-roll

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Galactose-binding domain-like [49784]
    sandwich; 9 strands in 2 sheets; jelly-roll

Superfamilies:

  1. Galactose-binding domain-like [49785] (32)
    link to SUPERFAMILY database - Superfamily
    1. Galactose-binding domain [49786] (4)
      1. Galactose oxidase, N-terminal domain [49787]
        1. Dactylium dendroides [TaxId: 5132] [49788] (4) picpic
          SQ Q01745 42-680
        2. Fungi (Fusarium sp.) [TaxId: 29916] [69209] (5) picpic
          sequence identical to that of Dactylium dendroides
        3. Fusarium graminearum (Gibberella zeae) [TaxId: 5518] [158956] (3) picpic
      2. Sialidase, C-terminal domain [49789]
        1. Micromonospora viridifaciens [TaxId: 1881] [49790] (8) picpic
          SQ Q02834 47-647
    2. Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain) [49791] (4)
      1. C2 domain of factor V [49792]
        1. Human (Homo sapiens) [TaxId: 9606] [49793] (3) picpic
        2. Cow (Bos taurus) [TaxId: 9913] [110117] (1) picpic
          SQ Q28107 29-324,1566-2210
      2. C2 domain of factor VIII [49794]
        1. Human (Homo sapiens) [TaxId: 9606] [49795] (4) picpic
      3. B1 domain of neuropilin-1 [82016]
        1. Human (Homo sapiens) [TaxId: 9606] [82017] (4) picpic
    3. APC10-like [69210] (3)
      Pfam 03256
      1. APC10/DOC1 subunit of the anaphase-promoting complex [69211]
        1. Human (Homo sapiens) [TaxId: 9606] [69212] (1) picpic
        2. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [74892] (1) picpic
      2. Placental protein 25, pp25 [117104]
        1. Human (Homo sapiens) [TaxId: 9606] [117105] (2) picpic
          SQ Q9Y547
    4. delta-Endotoxin, C-terminal domain [49796] (4)
      1. delta-Endotoxin, C-terminal domain [49797]
        1. Bacillus thuringiensis tenebrionis, CRYIIIA (BT13) [TaxId: 1444] [49798] (1) picpic
        2. Bacillus thuringiensis, CRY3bb1 [TaxId: 1428] [63716] (1) picpic
        3. Bacillus thuringiensis, CRYIA (A) [TaxId: 1428] [49799] (1) picpic
        4. Bacillus thuringiensis subsp. kurstaki, CRY2AA [TaxId: 29339] [63717] (1) picpic
    5. Ephrin receptor ligand binding domain [49800] (2)
      1. Ligand-binding domain of the ephb2 receptor tyrosine kinase [49801]
        1. Mouse (Mus musculus) [TaxId: 10090] [49802] (3) picpic
          SQ P54763 27-207
      2. Ephrin type-B receptor 4 [158957]
        1. Human (Homo sapiens) [TaxId: 9606] [158958] (2) picpic
          SQ P54760 17-196
    6. beta-Galactosidase/glucuronidase, N-terminal domain [49803] (5)
      1. beta-Galactosidase [49804]
        1. Escherichia coli [TaxId: 562] [49805] (25) picpic
          SQ P00722
        2. Arthrobacter sp. c2-2 [TaxId: 192168] [141112] (6) picpic
          SQ Q8KRF6 4-219
      2. beta-Glucuronidase [49806]
        1. Human (Homo sapiens) [TaxId: 9606] [49807] (1) picpic
      3. Beta-mannosidase [158959]
        1. Bacteroides thetaiotaomicron [TaxId: 818] [158960] (18) picpic
          SQ Q8AAK6 28-219
      4. Exochitosanase CsxA [158961]
        1. Amycolatopsis orientalis [TaxId: 31958] [158962] (2) picpic
          SQ Q56F26 42-225
    7. Chondroitin ABC lyase I, N-terminal domain [89236] (1)
      1. Chondroitin ABC lyase I, N-terminal domain [89237]
        1. Proteus vulgaris [TaxId: 585] [89238] (1) picpic
    8. CBM4/9 [74893] (3)
      1. Cellulose-binding domain of cellulase C [49809]
        1. Cellulomonas fimi [TaxId: 1708] [49810] (4) picpic
      2. Carbohydrate binding module from a thermostable xylanase [74894]
        1. Rhodothermus marinus [TaxId: 29549] [74895] (2) picpic
      3. Carbohydrate binding module from laminarinase 16A [82018]
        1. Thermotoga maritima [TaxId: 2336] [82019] (1) picpic
    9. Family 6 carbohydrate binding module, CBM6 [69213] (4)
      1. Carbohydrate binding module from xylanase U [69214]
        1. Clostridium thermocellum [TaxId: 1515] [69215] (2) picpic
      2. Cellulase B (lichenase 5a) [101583]
        1. Cellvibrio mixtus [TaxId: 39650] [101584] (6) picpic
      3. Putative xylanase [89239]
        1. Clostridium stercorarium [TaxId: 1510] [89240] (8) picpic
          SQ P33558 243-374, 384-512
      4. Hypothetical protein BH0236 [117106]
        1. Bacillus halodurans [TaxId: 86665] [117107] (3) picpic
          SQ Q9KG76 790-923
    10. CBM15 [69216] (1)
      1. Xylan-binding module from xylanase 10c [69217]
        1. Cellvibrio japonicus [TaxId: 155077] [69218] (3) picpic
          synonym: Pseudomonas cellulosa
    11. Family 17 carbohydrate binding module, CBM17 [69219] (1)
      1. Endo-1,4-beta glucanase EngF [69220]
        1. Clostridium cellulovorans [TaxId: 1493] [69221] (2) picpic
    12. CBM22 [49811] (1)
      CBM family 22, formerly x6b domain
      1. Xylan-binding domain [49812]
        1. Clostridium thermocellum [TaxId: 1515] [49813] (3) picpic
    13. Family 27 carbohydrate binding module, CBM27 [89241] (2)
      1. Beta-mannosidase, C-terminal domain [89242]
        1. Thermotoga maritima [TaxId: 2336] [89243] (3) picpic
      2. Beta-1,4-mannanase ManA [110118]
        1. Caldicellulosiruptor saccharolyticus [TaxId: 44001] [110119] (2) picpic
          SQ P77847 36-220
    14. Family 29 carbohydrate binding module, CBM29 [89244] (1)
      1. Non-catalytic protein 1, Ncp1 [89245]
        1. Piromyces equi [TaxId: 99929] [89246] (4) picpic
          SQ Q9C171 337-477
    15. Fucose binding lectin [74896] (1)
      1. Fucose binding lectin [74897]
        1. European eel (Anguilla anguilla) [TaxId: 7936] [74898] (1) picpic
    16. N-terminal domain of xrcc1 [49814] (1)
      1. N-terminal domain of xrcc1 [49815]
        the single-strand break repair protein
        1. Human (Homo sapiens) [TaxId: 9606] [49816] (2) picpic
    17. F-box associated region, FBA [101585] (1)
      1. F-box only protein 2 [101586]
        1. Mouse (Mus musculus) [TaxId: 10090] [101587] (3) picpic
    18. Allantoicase repeat [101588] (1)
      1. Allantoicase [101589]
        duplication: tandem repeat of two similar domains
        1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [101590] (2) picpic
          Yir029w
    19. PepX C-terminal domain-like [69222] (4)
      1. Bacterial cocaine esterase, C-terminal domain [69223]
        1. Rhodococcus sp. mb1 [TaxId: 51612] [69224] (4) picpic
      2. Alpha-amino acid ester hydrolase [89247]
        1. Xanthomonas citri [TaxId: 346] [89248] (1) picpic
        2. Acetobacter pasteurianus [TaxId: 438] [101591] (29) picpic
      3. X-Prolyl dipeptidyl aminopeptidase PepX [82020]
        1. Lactococcus lactis [TaxId: 1358] [82021] (1) picpic
    20. PA-IL, galactose-binding lectin 1 [82022] (1)
      a truncated form of this fold lacking one of the N-terminal strands
      1. PA-IL, galactose-binding lectin 1 [82023]
        1. Pseudomonas aeruginosa [TaxId: 287] [82024] (27) picpic
    21. Proprotein convertase P-domain [89249] (3)
      a truncated form of this fold lacking one of the N-terminal strands
      1. Kexin, C-terminal domain [89250]
        1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [89251] (4) picpic
      2. Furin, C-terminal domain [89252]
        1. Mouse (Mus musculus) [TaxId: 10090] [89253] (1) picpic
      3. Alkaline serine protease kp-43, C-terminal domain [110120]
        1. Bacillus sp. KSM-KP43 [TaxId: 109322] [110121] (3) picpic
          SQ Q93UV9 207-640
    22. Family 28 carbohydrate binding module, CBM28 [110122] (1)
      1. Endoglucanase (alkaline cellulase) [110123]
        1. Bacillus sp. 1139 [TaxId: 1411] [110124] (1) picpic
          SQ P06564 578-761
    23. Family 30 carbohydrate binding module, CBM30 (PKD repeat) [110125] (1)
      1. Endoglucanase CelJ [110126]
        1. Clostridium thermocellum [TaxId: 1515] [110127] (7) picpic
          SQ P71140 34-228 # chain B coverage
    24. Rhamnogalacturonase B, RhgB, C-terminal domain [110128] (1)
      1. Rhamnogalacturonase B, RhgB, C-terminal domain [110129]
        1. Aspergillus aculeatus [TaxId: 5053] [110130] (1) picpic
          SQ Q00019
    25. Hypothetical protein AT3g04780/F7O18_27 [117108] (1)
      Pfam 06201; DUF1000
      1. Hypothetical protein AT3g04780/F7O18_27 [117109]
        1. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [117110] (1) picpic
          SQ Q93Z56
    26. Beta-galactosidase LacA, domains 4 and 5 [117111] (1)
      duplication: tandem repeat of two similar domains; some sequence similarity to the beta-Galactosidase/glucuronidase N-terminal domain (scop_fa 49803)
      1. Beta-galactosidase LacA, domains 4 and 5 [117112]
        1. Penicillium sp. [TaxId: 5081] [117113] (2) picpic
          SQ Q700S9 41-1011
    27. Family 36 carbohydrate binding module, CBM36 [117114] (1)
      1. Endo-1,4-beta-xylanase D [117115]
        1. Paenibacillus polymyxa [TaxId: 1406] [117116] (2) picpic
          SQ P45796 516-635
    28. Extended PAW domain [141113] (1)
      single domain; the N-terminal half is covered by Pfam 04721; DUF750 (Smart 00613; PAW), the C-terminal half by PfamB 028386
      1. Peptide:N-glycanase, PNGase, C-terminal domain [141114]
        1. Mouse (Mus musculus) [TaxId: 10090] [141115] (4) picpic
          SQ Q9JI78 454-561! SQ Q9JI78 472-651
    29. CBM11 [141116] (1)
      Pfam 03425; Carbohydrate binding domain (family 11)
      1. Endoglucanase H [141117]
        1. Clostridium thermocellum [TaxId: 1515] [141118] (1) picpic
          SQ P16218 655-821
    30. beta-mannanase CBM [141119] (1)
      1. Endo-beta-1,4-mannanase C-terminal domain [141120]
        1. Bacillus sp. JAMB-602 [TaxId: 244966] [141121] (1) picpic
          SQ Q4W8M3 340-490
    31. YxiM N-terminal domain-like [158963] (1)
      PfamB 038265
      1. Hypothetical protein YxiM [158964]
        1. Bacillus subtilis [TaxId: 1423] [158965] (1) picpic
          SQ P42304 29-174
    32. NPCBM-like [158966] (2)
      Pfam 08305
      1. Uncharacterized Protein CPF2129 [158967]
        1. Clostridium perfringens [TaxId: 1502] [158968] (3) picpic
          SQ Q0TP83 906-1050
      2. Uncharacterized protein CPE0329 [158969]
        1. Clostridium perfringens [TaxId: 1502] [158970] (5) picpic
          SQ Q8XNK4 34-204
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk