Structural Classification of Proteins
home mail help root up expand collapse

Family: Sm motif of small nuclear ribonucleoproteins, SNRNP

forms homo and heteroheptameric ring structures

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Sm-like fold [50181]
    core: barrel, open; n*=4, S*=8; meander; SH3-like topology
  4. Superfamily: Sm-like ribonucleoproteins [50182]
    link to SUPERFAMILY database - Superfamily
  5. Family: Sm motif of small nuclear ribonucleoproteins, SNRNP [50183]
    forms homo and heteroheptameric ring structures

Protein Domains:

  1. D1 core SNRNP protein [50184]
    1. Human (Homo sapiens) [TaxId: 9606] [50185] (1) picpic
  2. D2 core SNRNP protein [50186]
    1. Human (Homo sapiens) [TaxId: 9606] [50187] (1) picpic
  3. D3 core SNRNP protein [50188]
    1. Human (Homo sapiens) [TaxId: 9606] [50189] (1) picpic
  4. B core SNRNP protein [50190]
    1. Human (Homo sapiens) [TaxId: 9606] [50191] (1) picpic
  5. Small nuclear ribonucleoprotein F, Smf [82087]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [82088] (2) picpic
  6. Archaeal homoheptameric Sm protein [63758]
    1. Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262] [63759] (5) picpic
      MTH649, smap1
    2. Archaeon Pyrobaculum aerophilum [TaxId: 13773] [63760] (2) picpic
      smap1
    3. Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234] [63761] (2) picpic
    4. Archaeon Archaeoglobus fulgidus, AF-Sm2 [TaxId: 2234] [74938] (1) picpic
    5. Archaeon Pyrococcus abyssi [TaxId: 29292] [82089] (2) picpic
    6. Sulfolobus solfataricus [TaxId: 2287] [141290] (14) picpic
      SQ Q97ZQ0 1-76
      SnRNP-2
  7. Sm-Like archaeal protein Smap3 [89317]
    contains additional C-terminal alpha+beta domain
    1. Archaeon Pyrobaculum aerophilum [TaxId: 13773] [89318] (1) picpic
  8. U6 snRNA-associated sm-like protein LSM5 [141291]
    1. Cryptosporidium parvum [TaxId: 5807] [141292] (2) picpic
      SQ Q5CXX3 24-115
Enter search key:
MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk