Structural Classification of Proteins
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Fold: Elongation factor/aminomethyltransferase common domain

barrel, closed; n=6, S=10; greek-key

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Elongation factor/aminomethyltransferase common domain [50464]
    barrel, closed; n=6, S=10; greek-key

Superfamilies:

  1. EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain [50465] (1)
    probably related to the second domain and its superfamiy by a circular permutation
    link to SUPERFAMILY database - Superfamily
    1. EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain [50466] (12)
      1. Elongation factor Tu (EF-Tu) [50467]
        1. Escherichia coli [TaxId: 562] [50468] (8)
          SQ P02990
          1. 1efc picpicxrefxref
            complexed with gdp, mg
            1. region a:297-393 [25720] picpiclink
            2. region b:297-393 [25721] picpiclink
          2. 1dg1 picpicxrefxref
            1. region g:297-393 [25724] picpiclink
            2. region h:297-393 [25725] picpiclink
          3. 1efu picpicxrefxrefxrefxref
            1. region a:297-393 [25722] picpiclink
            2. region c:297-393 [25723] picpiclink
          4. 2bvn picpicxrefxrefxrefxref
            automatically matched to d1d8ta2
            complexed with enx, gnp, mg
            1. region a:297-392 [129283] picpiclink
          5. 2bvn picpicxrefxrefxrefxref
            automatically matched to d1d8ta2
            complexed with enx, gnp, mg
            1. region b:297-392 [129286] picpiclink
          6. 1d8t picpicxrefxref
            complexed with ace, gdp, gea, mg
            1. region a:297-393 [25726] picpiclink
            2. region b:297-393 [25727] picpiclink
          7. 2fx3 picpicxrefxref
            automatically matched to d1d8ta2
            complexed with gdp, mg
            1. region a:297-392 [134272] picpiclink
          8. 1ob2 picpicxrefxref
            complexed with 2mg, 5mc, 7mg, gnp, h2u, kir, m2g, mad, mg, omc, omg, pha, psu, suc, yg
            1. region a:297-393 [103901] picpiclink
        2. Thermus aquaticus [TaxId: 271] [50469] (4)
          1. 1b23 picpicxrefxref
            complexed with aac, gnp, h2u, mg, mia, psu, s4u, so4
            1. region p:313-405 [25729] picpiclink
          2. 1eft picpicxrefxref
            complexed with gnp, mg
            1. region a:313-405 [25728] picpiclink
          3. 1ttt picpicxrefxref
            protein/tRNA complex; complexed with 1ma, 2mg, 5mc, 5mu, 7mg, gnp, h2u, m2g, mg, omc, omg, psu, yg
            1. region a:314-405 [25730] picpiclink
            2. region b:313-405 [25731] picpiclink
            3. region c:313-405 [25732] picpiclink
          4. 1tui picpicxrefxref
            complexed with gdp, mg
            1. region a:314-405 [25733] picpiclink
            2. region b:313-405 [25734] picpiclink
            3. region c:313-405 [25735] picpiclink
        3. Thermus thermophilus [TaxId: 274] [50470] (9)
          1. 2c78 picpicxrefxref
            automatically matched to d1aipa2
            complexed with gnp, mg, pul
            1. region a:313-405 [130038] picpiclink
          2. 2c77 picpicxrefxref
            automatically matched to d1aipa2
            complexed with gea, gnp, mg, peg
            1. region a:313-405 [130035] picpiclink
          3. 1exm picpicxrefxref
            complexed with gnp, mg
            1. region a:313-405 [25736] picpiclink
          4. 1ha3 picpicxrefxref
            complexed with bme, gdp, mau, mg
            1. region a:313-405 [60870] picpiclink
            2. region b:313-405 [60873] picpiclink
          5. 1aip picpicxrefxrefxrefxref
            1. region a:313-405 [25737] picpiclink
            2. region b:313-405 [25738] picpiclink
            3. region e:313-405 [25739] picpiclink
            4. region f:313-405 [25740] picpiclink
          6. 1ob5 picpicxrefxrefxrefxrefxrefxref
            automatically matched to d1aipa2
            complexed with 2mg, 5mc, 5mu, 7mg, c, enx, gnp, h2u, m2g, mad, mg, omc, omg, pha, psu, yg
            1. region a:313-405 [118692] picpiclink
          7. 1ob5 picpicxrefxrefxrefxrefxrefxref
            automatically matched to d1aipa2
            complexed with 2mg, 5mc, 5mu, 7mg, c, enx, gnp, h2u, m2g, mad, mg, omc, omg, pha, psu, yg
            1. region c:313-405 [118695] picpiclink
          8. 1ob5 picpicxrefxrefxrefxrefxrefxref
            automatically matched to d1aipa2
            complexed with 2mg, 5mc, 5mu, 7mg, c, enx, gnp, h2u, m2g, mad, mg, omc, omg, pha, psu, yg
            1. region e:313-405 [118698] picpiclink
          9. 1zc8 picpicxrefxrefxref
            automatically matched to d1aipa2
            complexed with du
            1. region y:313-405 [124894] picpiclink
        4. Cow (Bos taurus), mitochondrial [TaxId: 9913] [50471] (2)
          SQ P49410 56-452
          1. 1d2e picpicxrefxref
            complexed with gdp, mo2, mo4
            1. region a:349-451 [25741] picpiclink
            2. region b:349-451 [25742] picpiclink
            3. region c:349-451 [25743] picpiclink
            4. region d:349-451 [25744] picpiclink
          2. 1xb2 picpicxrefxrefxrefxref
            1. region a:349-452 [115055] picpiclink
      2. Elongation factor eEF-1alpha, C-terminal domain [50472]
        eukaryotic and archaeal homologue of EF-Tu
        1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [50473] (6)
          1. 1f60 picpicxrefxrefxref
            1. region a:335-441 [25745] picpiclink
          2. 2b7c picpicxrefxrefxref
            automatically matched to d1g7ca2
            mutant
            1. region a:335-441 [128031] picpiclink
          3. 1g7c picpicxrefxrefxref
            complexed with 5gp
            1. region a:335-443 [25746] picpiclink
          4. 1ije picpicxrefxrefxref
            complexed with gdp
            1. region a:335-441 [62486] picpiclink
          5. 2b7b picpicxrefxrefxref
            automatically matched to d1g7ca2
            complexed with gdp; mutant
            1. region a:335-441 [128028] picpiclink
          6. 1ijf picpicxrefxrefxref
            complexed with gdp, mg
            1. region a:335-441 [62490] picpiclink
        2. Archaeon Sulfolobus solfataricus [TaxId: 2287] [69277] (2)
          SQ P35021
          1. 1jny picpicxrefxref
            complexed with gdp
            1. region a:323-429 [66983] picpiclink
            2. region b:323-430 [66986] picpiclink
          2. 1skq picpicxrefxref
            complexed with gdp, mg
            1. region a:323-430 [105679] picpiclink
            2. region b:323-430 [105682] picpiclink
      3. Initiation factor eIF2 gamma subunit [74964]
        1. Archaeon Pyrococcus abyssi [TaxId: 29292] [74965] (5)
          1. 1kk1 picpicxrefxref
            complexed with gnp, mg, zn; mutant
            1. region a:322-410 [72635] picpiclink
          2. 1kk3 picpicxrefxref
            complexed with gdp, mg, zn
            1. region a:322-410 [72641] picpiclink
          3. 1kjz picpicxrefxref
            complexed with zn; mutant
            1. region a:322-410 [72629] picpiclink
          4. 1kk0 picpicxrefxref
            complexed with mse, zn
            1. region a:322-410 [72632] picpiclink
          5. 1kk2 picpicxrefxref
            complexed with gdp, mg, zn; mutant
            1. region a:322-410 [72638] picpiclink
        2. Archaeon Methanococcus jannaschii [TaxId: 2190] [101789] (1)
          1. 1s0u picpicxrefxref
            structural genomics
            complexed with zn
            1. region a:348-437 [98303] picpiclink
        3. Sulfolobus solfataricus [TaxId: 2287] [141344] (6)
          SQ Q980A5 321-415
          1. 2qn6 picpicxrefxrefxref
            automatically matched to d2ahoa2
            complexed with gdp, mg
            1. region a:321-415 [150912] picpiclink
          2. 2pmd picpicxrefxrefxrefxref
            automatically matched to d2ahoa2
            complexed with gdp, gnp, ppv
            1. region a:321-415 [149664] picpiclink
          3. 2pmd picpicxrefxrefxrefxref
            automatically matched to d2ahoa2
            complexed with gdp, gnp, ppv
            1. region b:321-415 [149667] picpiclink
          4. 2plf picpicxrefxref
            automatically matched to d2ahoa2
            1. region a:321-415 [149626] picpiclink
          5. 2aho picpicxrefxrefxrefxrefxref
            complexed with gnp, mg, zn
            1. region a:321-415 [126768] picpiclink
          6. 2qmu picpicxrefxrefxref
            automatically matched to d2ahoa2
            complexed with gdp, po4, zn
            1. region a:321-415 [150895] picpiclink
      4. Eukaryotic peptide chain release factor ERF2, C-terminal domain [110229]
        1. Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896] [110230] (3)
          SQ O74718
          1. 1r5b picpicxrefxref
            1. region a:555-622 [104804] picpiclink
          2. 1r5n picpicxrefxref
            complexed with gdp
            1. region a:555-622 [104807] picpiclink
          3. 1r5o picpicxrefxref
            complexed with gnp
            1. region a:555-622 [104810] picpiclink
      5. Elongation factor SelB, domain 3 [117223]
        1. Methanococcus maripaludis [TaxId: 39152] [117224] (3)
          SQ Q8J307
          1. 1wb1 picpicxrefxref
            complexed with cmh, dxc, gdp, mg, so4
            1. region a:272-387 [114438] picpiclink
            2. region b:272-387 [114441] picpiclink
            3. region c:272-387 [114445] picpiclink
            4. region d:272-387 [114448] picpiclink
          2. 1wb2 picpicxrefxref
            complexed with cmh, dxc, so4
            1. region a:272-387 [114452] picpiclink
            2. region b:272-387 [114455] picpiclink
            3. region c:272-387 [114459] picpiclink
            4. region d:272-387 [114462] picpiclink
          3. 1wb3 picpicxrefxref
            complexed with cmh, dxc, gnp, mg, so4
            1. region a:272-387 [114466] picpiclink
            2. region b:272-387 [114469] picpiclink
            3. region c:272-387 [114473] picpiclink
            4. region d:272-387 [114476] picpiclink
      6. Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 3-like domain [141345]
        1. Pseudomonas syringae pv. tomato [TaxId: 323] [141346] (1)
          SQ Q87WW1 330-434
          1. 1zun picpicxrefxrefxref
            complexed with ags, gdp, mg, na
            1. region b:330-434 [125678] picpiclink
  2. Aminomethyltransferase beta-barrel domain [101790] (1)
    link to SUPERFAMILY database - Superfamily
    1. Aminomethyltransferase beta-barrel domain [101791] (5)
      1. N,N-dimethylglycine oxidase, C-terminal domain [101792]
        1. Arthrobacter globiformis [TaxId: 1665] [101793] (3)
          1. 1pj5 picpicxrefxrefxref
            complexed with act, fad, na
            1. region a:743-830 [94742] picpiclink
          2. 1pj6 picpicxrefxrefxref
            complexed with fad, fol, na
            1. region a:743-830 [94746] picpiclink
          3. 1pj7 picpicxrefxrefxref
            complexed with fad, fon, na
            1. region a:743-830 [94750] picpiclink
      2. Hypothetical protein YgfZ, C-terminal domain [101794]
        1. Escherichia coli [TaxId: 562] [101795] (2)
          SQ P39179
          1. 1vly picpicxref
            Structural genomics target
            complexed with act, ca, cl, edo
            1. region a:244-325 [108871] picpiclink
          2. 1nrk picpicxref
            structural genomics
            complexed with so4
            1. region a:244-325 [92089] picpiclink
      3. Glycine cleavage system T protein, GcvT [110231]
        1. Thermotoga maritima [TaxId: 2336] [110232] (4)
          SQ Q9WY54
          1. 1wos picpicxref
            1. region a:279-361 [109468] picpiclink
          2. 1wor picpicxref
            complexed with red
            1. region a:279-362 [109466] picpiclink
          3. 1wop picpicxref
            complexed with fon
            1. region a:279-362 [109460] picpiclink
          4. 1woo picpicxref
            complexed with thl
            1. region a:279-362 [109458] picpiclink
        2. Escherichia coli [TaxId: 562] [110233] (1)
          SQ P27248
          1. 1vlo picpicxref
            Structural genomics target
            mutant
            1. region a:278-367 [108838] picpiclink
        3. Pyrococcus horikoshii [TaxId: 53953] [117225] (1)
          SQ O58888
          1. 1v5v picpicxref
            complexed with gol, peg
            1. region a:313-401 [113539] picpiclink
            2. region b:313-401 [113541] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk