Structural Classification of Proteins

Superfamily: Triosephosphate isomerase (TIM)

: uperfamily

Lineage:

Root: scop
Class: Alpha and beta proteins (a/b) [51349]
Mainly parallel beta sheets (beta-alpha-beta units)
Fold: TIM beta/alpha-barrel [51350]
contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
the first seven superfamilies have similar phosphate-binding sites
Superfamily: Triosephosphate isomerase (TIM) [51351]
uperfamily

Families:

Triosephosphate isomerase (TIM) [51352] (18)
1. Triosephosphate isomerase [51353]
  1. Chicken (Gallus gallus) [TaxId: 9031] [51354] (16)
    SQ P00940
    1. 1sw3
      complexed with pga; mutant
      1. chain a [106065]
      2. chain b [106066]
    2. 1sw0
      complexed with pga; mutant
      1. chain a [106060]
      2. chain b [106061]
    3. 1spq
      complexed with peg; mutant
      1. chain a [105878]
      2. chain b [105879]
    4. 1tph
      complexed with pgh
      1. chain 1 [28439]
      2. chain 2 [28440]
    5. 1tpv
      complexed with pgh; mutant
      1. chain a [28443]
      2. chain b [28444]
    6. 1tpu
      complexed with pgh; mutant
      1. chain a [28441]
      2. chain b [28442]
    7. 1tpb
      complexed with pgh; mutant
      1. chain 1 [28445]
      2. chain 2 [28446]
    8. 1tpc
      complexed with pgh; mutant
      1. chain 1 [28447]
      2. chain 2 [28448]
    9. 1tpw
      complexed with pgh; mutant
      1. chain a [28449]
      2. chain b [28450]
    10. 1sw7
      complexed with pga; mutant
      1. chain a [106073]
      2. chain b [106074]
    11. 1su5
      complexed with gol, pga, so4; mutant
      1. chain a [106020]
      2. chain b [106021]
    12. 1ssd
      complexed with so4; mutant
      1. chain a [105979]
      2. chain b [105980]
    13. 1sq7
      mutant
      1. chain a [105886]
      2. chain b [105887]
    14. 1ssg
      complexed with gol, pga, so4; mutant
      1. chain a [105984]
      2. chain b [105985]
    15. 8tim
      complexed with so4
      1. chain a [28451]
      2. chain b [28452]
    16. 1tim
      1. chain a [28453]
      2. chain b [28454]
  2. Human (Homo sapiens) [TaxId: 9606] [51355] (5)
    1. 2jk2
      automatically matched to d1htia_
      1. region a:4-248 [148134]
    2. 2jk2
      automatically matched to d1htia_
      1. region b:4-248 [148135]
    3. 1wyi
      automatically matched to d1htia_
      1. region a:1-248 [121446]
    4. 1wyi
      automatically matched to d1htia_
      1. region b:1-248 [121447]
    5. 1hti
      complexed with pga
      1. chain a [28455]
      2. chain b [28456]
  3. Rabbit (Oryctolagus cuniculus) [TaxId: 9986] [102035] (3)
    1. 1r2r
      complexed with dms, mo2, mo6, trs
      1. chain a [96875]
      2. chain b [96876]
      3. chain c [96877]
      4. chain d [96878]
    2. 1r2t
      1. chain a [96883]
      2. chain b [96884]
    3. 1r2s
      1. chain a [96879]
      2. chain b [96880]
      3. chain c [96881]
      4. chain d [96882]
  4. Nematode (Caenorhabditis elegans) [TaxId: 6239] [82235] (1)
    1. 1mo0
      complexed with act, so4
      1. chain a [79329]
      2. chain b [79330]
  5. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [51356] (7)
    1. 1ney
      complexed with 13p, ftr; mutant
      1. chain a [80449]
      2. chain b [80450]
    2. 1i45
      complexed with ftr; mutant
      1. chain a [61665]
      2. chain b [61666]
    3. 1nf0
      complexed with 13p, ftr; mutant
      1. chain a [80451]
      2. chain b [80452]
    4. 7tim
      complexed with pgh
      1. chain a [28457]
      2. chain b [28458]
    5. 1ypi
      1. chain a [28459]
      2. chain b [28460]
    6. 3ypi
      complexed with pgh; mutant
      1. chain a [28463]
      2. chain b [28464]
    7. 2ypi
      complexed with pga
      1. chain a [28461]
      2. chain b [28462]
  6. Trypanosoma brucei [TaxId: 5691] [51357] (19)
    1. 1kv5
      complexed with dtt, gol, pga, so4; mutant
      1. chain a [73052]
      2. chain b [73053]
    2. 1tpf
      complexed with dms
      1. chain a [28467]
      2. chain b [28468]
    3. 5tim
      complexed with dtt, so4
      1. chain a [28465]
      2. chain b [28466]
    4. 1tpe
      1. chain a [28469]
    5. 1iih
      complexed with 3pg
      1. chain a [62430]
      2. chain b [62431]
    6. 1tpd
      1. chain a [28470]
      2. chain b [28471]
    7. 4tim
      complexed with 2pg
      1. chain a [28472]
      2. chain b [28473]
    8. 1ag1
      complexed with po4
      1. chain o [28474]
      2. chain t [28475]
    9. 1iig
      complexed with 3pp
      1. chain a [62428]
      2. chain b [62429]
    10. 1ttj
      complexed with pgh; mutant
      1. chain a [28478]
    11. 1trd
      complexed with pgh
      1. chain a [28476]
      2. chain b [28477]
    12. 3tim
      1. chain a [28483]
      2. chain b [28484]
    13. 1dkw
      modified substrate binding site
      complexed with tbu
      1. chain a [28487]
      2. chain b [28488]
    14. 1ml1
      complexed with pga
      1. chain a [28489]
      2. chain c [28490]
      3. chain e [28491]
      4. chain g [28492]
      5. chain i [28493]
      6. chain k [28494]
    15. 1tti
      complexed with pga; mutant
      1. chain a [28482]
    16. 1tsi
      complexed with 4pb
      1. chain a [28485]
      2. chain b [28486]
    17. 6tim
      complexed with g3p
      1. chain a [28495]
      2. chain b [28496]
    18. 1tri
      monomeric mutant structure
      1. chain a [28479]
    19. 1mss
      different dimerisation mode mutant
      1. chain a [28480]
      2. chain b [28481]
  7. Trypanosoma cruzi [TaxId: 5693] [51358] (5)
    SQ P52270
    1. 1sux
      complexed with bts, so4
      1. chain a [106031]
      2. chain b [106032]
    2. 1tcd
      1. chain a [28497]
      2. chain b [28498]
    3. 1ci1
      structure in hexane
      complexed with hex
      1. chain a [28499]
      2. chain b [28500]
    4. 2oma
      automatically matched to d1suxa_
      complexed with cs1, peg, pge, so4
      1. region a:2-251 [148869]
    5. 2oma
      automatically matched to d1suxa_
      complexed with cs1, peg, pge, so4
      1. region b:2-251 [148870]
  8. Plasmodium falciparum [TaxId: 5833] [51359] (9)
    SQ Q07412
    1. 1o5x
      complexed with 2pg, 3py, po3; mutant
      1. chain a [92528]
      2. chain b [92529]
    2. 1vga
      mutant
      1. chain a [113641]
      2. chain b [113642]
      3. chain c [113643]
      4. chain d [113644]
    3. 1lyx
      complexed with pga
      1. chain a [78304]
    4. 1ydv
      1. chain a [28501]
      2. chain b [28502]
    5. 1m7o
      complexed with 3pg
      1. chain a [78740]
      2. chain b [78741]
    6. 1m7p
      complexed with g3p
      1. chain a [78742]
      2. chain b [78743]
    7. 1wob
      complexed with so4; mutant
      1. chain a [114774]
      2. chain b [114775]
      3. chain c [114776]
      4. chain d [114777]
    8. 1woa
      complexed with g2h; mutant
      1. chain a [114770]
      2. chain b [114771]
      3. chain c [114772]
      4. chain d [114773]
    9. 1lzo
      complexed with pga
      1. chain a [78307]
      2. chain b [78308]
      3. chain c [78309]
      4. chain d [78310]
  9. Leishmania mexicana [TaxId: 5665] [51360] (4)
    1. 1n55
      ultra-high resolution structure
      complexed with acy, gol, pga; mutant
      1. chain a [80007]
    2. 1if2
      complexed with 129; mutant
      1. chain a [62342]
    3. 1amk
      complexed with pga
      1. chain a [28503]
    4. 1qds
      complexed with pga; mutant
      1. chain a [28504]
  10. Entamoeba histolytica [TaxId: 5759] [82236] (1)
    1. 1m6j
      1. chain a [78693]
      2. chain b [78694]
  11. Escherichia coli [TaxId: 562] [51361] (1)
    1. 1tre
      1. chain a [28505]
      2. chain b [28506]
  12. Synthetic, hybrid between Escherichia coli and chicken TIM [51362] (1)
    1. 1tmh
      complexed with so4; mutant
      1. chain a [28507]
      2. chain b [28508]
      3. chain c [28509]
      4. chain d [28510]
  13. Bacillus stearothermophilus [TaxId: 1422] [51363] (2)
    1. 2btm
      complexed with pga; mutant
      1. chain a [28511]
      2. chain b [28512]
    2. 1btm
      complexed with pga
      1. chain a [28513]
      2. chain b [28514]
  14. Vibrio marinus [TaxId: 90736] [51364] (2)
    1. 1aw1
      complexed with pga
      1. chain a [28515]
      2. chain b [28516]
      3. chain d [28517]
      4. chain e [28518]
      5. chain g [28519]
      6. chain h [28520]
      7. chain j [28521]
      8. chain k [28522]
    2. 1aw2
      complexed with so4
      1. chain a [28523]
      2. chain b [28524]
      3. chain d [28525]
      4. chain e [28526]
      5. chain g [28527]
      6. chain h [28528]
      7. chain j [28529]
      8. chain k [28530]
  15. Thermotoga maritima [TaxId: 2336] [51365] (1)
    1. 1b9b
      1. chain a [28531]
      2. chain b [28532]
  16. Archaeon Pyrococcus woesei [TaxId: 2262] [63891] (1)
    1. 1hg3
      complexed with 3pp
      1. chain a [61025]
      2. chain b [61026]
      3. chain c [61027]
      4. chain d [61028]
      5. chain e [61029]
      6. chain f [61030]
      7. chain g [61031]
      8. chain h [61032]
  17. Thermoproteus tenax [TaxId: 2271] [110342] (1)
    SQ Q8NKN9
    1. 1w0m
      complexed with po4
      1. chain a [109027]
      2. chain b [109028]
      3. chain c [109029]
      4. chain d [109030]
      5. chain e [109031]
      6. chain f [109032]
      7. chain g [109033]
      8. chain h [109034]
  18. Trypanosoma (Trypanozoon) brucei brucei (Trypanosoma brucei brucei) [TaxId: 39700] [159375] (2)
    1. 2v5l
      automatically matched to d1tpfa_
      complexed with so4
      1. region a:2-250 [152576]
    2. 2v5l
      automatically matched to d1tpfa_
      complexed with so4
      1. region b:302-550 [152577]