Structural Classification of Proteins
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Family: Adenosine/AMP deaminase

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: TIM beta/alpha-barrel [51350]
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. Superfamily: Metallo-dependent hydrolases [51556]
    the beta-sheet barrel is similarly distorted and capped by a C-terminal helix
    has transition metal ions bound inside the barrel
    link to SUPERFAMILY database - Superfamily
  5. Family: Adenosine/AMP deaminase [51557]

Protein Domains:

  1. Adenosine deaminase (ADA) [51558]
    Common fold covers the whole protein structure
    1. Mouse (Mus musculus) [TaxId: 10090] [51559] (8)
      1. 1a4m picpic
        complexed with prh, zn
        1. chain a [29014] picpiclink
        2. chain b [29015] picpiclink
        3. chain c [29016] picpiclink
        4. chain d [29017] picpiclink
      2. 1fkx picpic
        complexed with prh, zn; mutant
        1. chain a [29018] picpiclink
      3. 1fkw picpic
        complexed with pur, zn; mutant
        1. chain a [29019] picpiclink
      4. 1a4l picpic
        complexed with dcf, zn
        1. chain a [29023] picpiclink
        2. chain b [29024] picpiclink
        3. chain c [29025] picpiclink
        4. chain d [29026] picpiclink
      5. 1uip picpic
        complexed with pur, zn; mutant
        1. chain a [29022] picpiclink
      6. 1uio picpic
        complexed with hpr, zn; mutant
        1. chain a [29021] picpiclink
      7. 1add picpic
        complexed with 1da, zn
        1. chain a [29020] picpiclink
      8. 2ada picpic
        complexed with hpr, zn
        1. chain a [29027] picpiclink
    2. Cow (Bos taurus) [TaxId: 9913] [82257] (20)
      SQ P56658 3-350 ! SQ P56658
      1. 1vfl picpic
        automatically matched to d1ndva_
        complexed with zn
        1. region a:1-349 [120041] picpiclink
      2. 1ndy picpic
        complexed with fr3, zn
        1. chain a [91826] picpiclink
      3. 1ndw picpic
        complexed with fr2, zn
        1. chain a [91825] picpiclink
      4. 1ndz picpic
        complexed with fr5, zn
        1. chain a [91827] picpiclink
      5. 2z7g picpic
        automatically matched to d1ndva_
        complexed with eh9, zn
        1. region a:1-349 [154197] picpiclink
      6. 1uml picpic
        complexed with fr4, zn
        1. chain a [107957] picpiclink
      7. 1qxl picpic
        complexed with fr8, zn
        1. chain a [104644] picpiclink
      8. 1o5r picpic
        complexed with fr9, zn
        1. chain a [103890] picpiclink
      9. 1wxz picpic
        automatically matched to d1ndva_
        complexed with frl, zn
        1. region a:4-352 [121427] picpiclink
      10. 1ndv picpic
        complexed with fr0, zn
        1. chain a [91824] picpiclink
      11. 2e1w picpic
        automatically matched to d1ndva_
        complexed with fr6, zn
        1. region a:4-352 [131972] picpiclink
      12. 1w1i picpicxrefxref
        complexed with afl, bma, man, nag, ndg, zn
        1. chain e [109051] picpiclink
        2. chain f [109052] picpiclink
        3. chain g [109053] picpiclink
        4. chain h [109054] picpiclink
      13. 1v7a picpic
        complexed with frc, zn
        1. chain a [113560] picpiclink
      14. 1wxy picpic
        automatically matched to d1ndva_
        complexed with frk, zn
        1. region a:4-352 [121426] picpiclink
      15. 2bgn picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1w1ie_
        complexed with bma, ful, man, nag, zn; mutant
        1. region e:4-355 [128492] picpiclink
      16. 2bgn picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1w1ie_
        complexed with bma, ful, man, nag, zn; mutant
        1. region f:4-355 [128493] picpiclink
      17. 2bgn picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1w1ie_
        complexed with bma, ful, man, nag, zn; mutant
        1. region g:4-355 [128494] picpiclink
      18. 2bgn picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1w1ie_
        complexed with bma, ful, man, nag, zn; mutant
        1. region h:4-355 [128495] picpiclink
      19. 1krm picpic
        complexed with prh, zn
        1. chain a [77513] picpiclink
      20. 1v79 picpic
        complexed with fr7, zn
        1. chain a [113559] picpiclink
    3. Plasmodium yoelii [TaxId: 5861] [141799] (2)
      SQ Q7RMV2 8-364
      1. 2amx picpic
        complexed with co, unx
        1. region a:20-376 [127024] picpiclink
      2. 2amx picpic
        automatically matched to 2AMX A:20-376
        complexed with co, unx
        1. region b:20-376 [127025] picpiclink
  2. AMP deaminase (AMPD), catalytic domain [141800]
    elaborated fold with additional structures
    1. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [141801] (1)
      SQ O80452 212-839
      1. 2a3l picpic
        complexed with cf5, po4, zn
        1. region a:212-839 [126091] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk