Structural Classification of Proteins
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Superfamily: Aldolase

Common fold covers whole protein structure
link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: TIM beta/alpha-barrel [51350]
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. Superfamily: Aldolase [51569]
    Common fold covers whole protein structure
    link to SUPERFAMILY database - Superfamily

Families:

  1. Class I aldolase [51570] (37)
    the catalytic lysine forms schiff-base intermediate with substrate
    possible link between the aldolase superfamily and the phosphate-binding beta/alpha barrels
    1. Deoxyribose-phosphate aldolase DeoC [69394]
      1. Escherichia coli [TaxId: 562] [69395] (4) picpic
        SQ P00882
      2. Thermotoga maritima [TaxId: 2336] [82270] (1) picpic
        TM1559
      3. Aquifex aeolicus [TaxId: 63363] [82271] (1) picpic
      4. Thermus thermophilus [TaxId: 274] [89492] (2) picpic
      5. Archaeon Aeropyrum pernix [TaxId: 56636] [89493] (1) picpic
      6. Archaeon Pyrobaculum aerophilum [TaxId: 13773] [141830] (2) picpic
        SQ Q8ZXK7 1-226
    2. Archaeal fructose 1,6-bisphosphate aldolase [102088]
      1. Archaeon Thermoproteus tenax [TaxId: 2271] [102089] (23) picpic
    3. N-acetylneuraminate lyase [51571]
      1. Escherichia coli [TaxId: 562] [51572] (4) picpic
      2. Haemophilus influenzae [TaxId: 727] [51573] (6) picpic
    4. Dihydrodipicolinate synthase [51574]
      1. Escherichia coli [TaxId: 562] [51575] (14) picpic
      2. Thermotoga maritima [TaxId: 2336] [102090] (1) picpic
      3. Mycobacterium tuberculosis [TaxId: 1773] [141831] (8) picpic
        SQ P63945 5-300
      4. Bacillus anthracis [TaxId: 1392] [141832] (8) picpic
        SQ Q81WN7 1-292
    5. Fructose-1,6-bisphosphate aldolase [51576]
      1. Human (Homo sapiens), muscle isozyme [TaxId: 9606] [51577] (3) picpic
      2. Human (Homo sapiens), liver isozyme [TaxId: 9606] [51578] (17) picpic
      3. Rabbit (Oryctolagus cuniculus), muscle isozyme [TaxId: 9986] [51580] (42) picpic
      4. Rabbit (Oryctolagus cuniculus), liver isozyme [TaxId: 9986] [63920] (1) picpic
      5. Drosophila melanogaster [TaxId: 7227] [51579] (1) picpic
      6. Plasmodium falciparum [TaxId: 5833] [51581] (1) picpic
      7. Trypanosome (Leishmania mexicana) [TaxId: 5665] [51582] (13) picpic
      8. Trypanosome (Trypanosoma brucei) [TaxId: 5691] [51583] (1) picpic
      9. Plasmodium yoelii yoelii [TaxId: 73239] [141833] (2) picpic
        SQ Q7RMC9 3-258
      10. Human (Homo sapiens), brain isozyme [TaxId: 9606] [141834] (12) picpic
        SQ P09972 2-343
    6. KDPG aldolase [51584]
      1. Escherichia coli [TaxId: 562] [51585] (11) picpic
      2. Pseudomonas putida [TaxId: 303] [102091] (1) picpic
      3. Thermotoga maritima [TaxId: 2336] [110357] (7) picpic
        SQ Q9WXS1
    7. Hypothetical protein HI0047 [102092]
      putative KHG/KDPG aldolase
      1. Haemophilus influenzae [TaxId: 727] [102093] (1) picpic
    8. Type I 3-dehydroquinate dehydratase [51586]
      1. Salmonella typhi [TaxId: 90370] [51587] (3) picpic
      2. Staphylococcus aureus [TaxId: 1280] [117378] (2) picpic
        SQ Q6GII7
    9. Transaldolase [51588]
      probably related to class I aldolases by a circular permutation
      1. Escherichia coli [TaxId: 562] [51589] (7) picpic
      2. Human (Homo sapiens) [TaxId: 9606] [51590] (1) picpic
      3. Mouse (Mus musculus) [TaxId: 10090] [141835] (4) picpic
        SQ Q93092 13-331
    10. Decameric fructose-6-phosphate aldolase/transaldolase [75085]
      forms helix-swapped pentamers
      1. Escherichia coli [TaxId: 562] [75086] (1) picpic
      2. Thermotoga maritima [TaxId: 2336] [117379] (1) picpic
        SQ Q9WYD1
      3. Thermus thermophilus [TaxId: 274] [141836] (10) picpic
        SQ Q5SJE8 1-211
        clear orthologue of the E.coli protein; annotated as transaldolase in UniProt
    11. Putative aldolase YihT [110358]
      1. Salmonella typhimurium [TaxId: 90371] [110359] (1) picpic
        SQ Q9L7R9
    12. 2-keto-3-deoxy gluconate aldolase Eda [110360]
      1. Sulfolobus solfataricus [TaxId: 2287] [110361] (4) picpic
        SQ Q97U28
  2. Class II FBP aldolase [51591] (3)
    metal-dependent
    1. Fructose-bisphosphate aldolase (FBP aldolase) [51592]
      1. Escherichia coli [TaxId: 562] [51593] (4) picpic
      2. Thermus aquaticus [TaxId: 271] [102094] (2) picpic
    2. Tagatose-1,6-bisphosphate aldolase [75087]
      1. Escherichia coli [TaxId: 562] [75088] (1) picpic
  3. 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) [51594] (5)
    hybrid of classes I and II aldolase
    1. 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) [51595]
      1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [51596] (12) picpic
      2. Human (Homo sapiens) [TaxId: 9606] [63921] (2) picpic
      3. Pseudomonas aeruginosa [TaxId: 287] [51597] (2) picpic
      4. Escherichia coli [TaxId: 562] [51598] (4) picpic
      5. Prosthecochloris vibrioformis [TaxId: 1098] [110362] (3) picpic
        SQ Q59334
  4. Class I DAHP synthetase [51599] (6)
    1. 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) [51600]
      1. Escherichia coli, phenylalanine-regulated isozyme [TaxId: 562] [51601] (4) picpic
      2. Baker's yeast (Saccharomyces cerevisiae), tyrosine-regulated isozyme [TaxId: 4932] [82272] (11) picpic
      3. Thermotoga maritima [TaxId: 2336] [110363] (5) picpic
        SQ Q9WYH8
    2. 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) [51602]
      1. Escherichia coli [TaxId: 562] [51603] (10) picpic
        SQ P17579
      2. Haemophilus influenzae [TaxId: 727] [102095] (1) picpic
      3. Aquifex aeolicus [TaxId: 63363] [63922] (20) picpic
  5. HMGL-like [89494] (3)
    Pfam 00682
    1. 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain [89495]
      1. Pseudomonas sp. [TaxId: 306] [89496] (1) picpic
        gene product DmpG
    2. 2-isopropylmalate synthase LeuA, catalytic domain [110364]
      1. Mycobacterium tuberculosis [TaxId: 1773] [110365] (1) picpic
        SQ P96420
    3. Transcarboxylase 5S subunit, N-terminal domain [110366]
      1. Propionibacterium freudenreichii shermanii [TaxId: 1752] [110367] (6) picpic
        SQ Q70AC7 3-474
  6. NeuB-like [110368] (2)
    Pfam 03102
    1. Spore coat polysaccharide biosynthesis protein SpsE, N-terminal domain [110369]
      1. Bacillus subtilis [TaxId: 1423] [110370] (1) picpic
        SQ P39625
    2. Capsule biosynthesis protein SiaC, N-terminal domain [117380]
      1. Neisseria meningitidis [TaxId: 487] [117381] (4) picpic
        SQ Q57265
  7. GatZ-like [141837] (1)
    Pfam 08013
    1. Putative tagatose 6-phosphate kinase 1 GatZ [141838]
      1. Escherichia coli [TaxId: 562] [141839] (4) picpic
        SQ P37191 1-420
  8. Class-II DAHP synthetase [141840] (1)
    Pfam 01474
    1. Probable DAHP synthetase AroG, phenylalanine-repressible [141841]
      1. Mycobacterium tuberculosis [TaxId: 1773] [141842] (2) picpic
        SQ O53512 1-462
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk