Structural Classification of Proteins

Superfamily: RuBisCo, C-terminal domain

: uperfamily

Lineage:

Root: scop
Class: Alpha and beta proteins (a/b) [51349]
Mainly parallel beta sheets (beta-alpha-beta units)
Fold: TIM beta/alpha-barrel [51350]
contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
the first seven superfamilies have similar phosphate-binding sites
Superfamily: RuBisCo, C-terminal domain [51649]
uperfamily

Families:

RuBisCo, large subunit, C-terminal domain [51650] (12)
N-terminal domain is alpha+beta
1. Ribulose 1,5-bisphosphate carboxylase-oxygenase [51651]
  1. Tobacco (Nicotiana tabacum), variant turkish samsun [TaxId: 4097] [51652] (5)
    1. 3rub
      complexed with so4
      1. region l:148-467 [29326]
    2. 1ej7
      complexed with po4
      1. region l:148-474 [29327]
    3. 1rlc
      complexed with cap
      1. region l:148-467 [29330]
    4. 1rld
      1. region a:148-467 [29328]
      2. region b:148-467 [29329]
    5. 4rub
      complexed with cap, cbx, mg
      1. region a:148-473 [29331]
      2. region b:148-473 [29332]
      3. region c:148-473 [29333]
      4. region d:148-473 [29334]
  2. Spinach (Spinacia oleracea) [TaxId: 3562] [51653] (11)
    1. 8ruc
      complexed with cap, mg
      1. region a:148-475 [29339]
      2. region c:148-475 [29340]
      3. region e:148-475 [29341]
      4. region g:148-475 [29342]
    2. 1ir1
      complexed with cap, kcx, mg, mme
      1. region a:148-475 [71282]
      2. region b:148-475 [71284]
      3. region c:148-475 [71286]
      4. region d:148-475 [71288]
    3. 1rbo
      complexed with cap
      1. region l:148-475 [29343]
      2. region b:148-475 [29344]
      3. region e:148-475 [29345]
      4. region h:148-475 [29346]
    4. 1aa1
      complexed with 3pg, mg
      1. region l:148-463 [29347]
      2. region b:148-463 [29348]
      3. region e:148-463 [29349]
      4. region h:148-463 [29350]
    5. 1rxo
      complexed with ca, rub
      1. region l:148-463 [29351]
      2. region b:148-463 [29352]
      3. region e:148-463 [29353]
      4. region h:148-463 [29354]
    6. 1aus
      complexed with cbx, mg
      1. region l:148-463 [29355]
    7. 1aus
      duplicate of 1AUS L:148-463
      complexed with cbx, mg
      1. region m:148-463 [118409]
    8. 1aus
      duplicate of 1AUS L:148-463
      complexed with cbx, mg
      1. region n:148-463 [118411]
    9. 1aus
      duplicate of 1AUS L:148-463
      complexed with cbx, mg
      1. region o:148-463 [118413]
    10. 1rco
      complexed with xdp
      1. region l:148-475 [29356]
      2. region b:148-475 [29357]
      3. region e:148-475 [29358]
      4. region h:148-475 [29359]
      5. region k:148-475 [29360]
      6. region o:148-475 [29361]
      7. region r:148-475 [29362]
      8. region v:148-475 [29363]
    11. 1rcx
      complexed with rub
      1. region l:148-475 [29364]
      2. region b:148-475 [29365]
      3. region e:148-475 [29366]
      4. region h:148-475 [29367]
      5. region k:148-475 [29368]
      6. region o:148-475 [29369]
      7. region r:148-475 [29370]
      8. region v:148-475 [29371]
  3. Galdieria partita [TaxId: 83374] [51654] (2)
    1. 1bwv
      complexed with cap, mg
      1. region a:150-478 [29372]
      2. region c:150-478 [29373]
      3. region e:150-478 [29374]
      4. region g:150-478 [29375]
    2. 1iwa
      complexed with so4
      1. region a:150-478 [83726]
      2. region c:150-478 [83729]
      3. region e:150-478 [83732]
      4. region g:150-478 [83735]
      5. region i:150-478 [83738]
      6. region k:150-478 [83741]
      7. region m:150-478 [83744]
      8. region o:150-478 [83747]
  4. Chlamydomonas reinhardtii [TaxId: 3055] [69403] (74)
    1. 1gk8
      complexed with cap, egl, mg, mme
      1. region a:150-475 [65234]
      2. region c:150-475 [65236]
      3. region e:150-475 [65238]
      4. region g:150-475 [65240]
    2. 2v6a
      automatically matched to d1gk8a1
      complexed with cap, edo, mg, mme; mutant
      1. region a:150-475 [152692]
    3. 2v6a
      automatically matched to d1gk8a1
      complexed with cap, edo, mg, mme; mutant
      1. region b:150-475 [152694]
    4. 2v6a
      automatically matched to d1gk8a1
      complexed with cap, edo, mg, mme; mutant
      1. region c:150-475 [152696]
    5. 2v6a
      automatically matched to d1gk8a1
      complexed with cap, edo, mg, mme; mutant
      1. region d:150-475 [152698]
    6. 2v6a
      automatically matched to d1gk8a1
      complexed with cap, edo, mg, mme; mutant
      1. region e:150-475 [152700]
    7. 2v6a
      automatically matched to d1gk8a1
      complexed with cap, edo, mg, mme; mutant
      1. region f:150-475 [152702]
    8. 2v6a
      automatically matched to d1gk8a1
      complexed with cap, edo, mg, mme; mutant
      1. region g:150-475 [152704]
    9. 2v6a
      automatically matched to d1gk8a1
      complexed with cap, edo, mg, mme; mutant
      1. region h:150-475 [152706]
    10. 1ir2
      complexed with cap, cry, hyp, kcx, mg, mme, smc
      1. region a:150-475 [71302]
      2. region b:150-475 [71304]
      3. region c:150-475 [71306]
      4. region d:150-475 [71308]
      5. region e:150-475 [71310]
      6. region f:150-475 [71312]
      7. region g:150-475 [71314]
      8. region h:150-475 [71316]
      9. region s:150-475 [71326]
      10. region t:150-475 [71328]
      11. region u:150-475 [71330]
      12. region v:150-475 [71332]
      13. region w:150-475 [71334]
      14. region x:150-475 [71336]
      15. region y:150-475 [71338]
      16. region z:150-475 [71340]
    11. 1uw9
      automatically matched to d1gk8a1
      complexed with cap, edo, mg; mutant
      1. region a:150-475 [119710]
    12. 1uw9
      automatically matched to d1gk8a1
      complexed with cap, edo, mg; mutant
      1. region b:150-475 [119712]
    13. 1uw9
      automatically matched to d1gk8a1
      complexed with cap, edo, mg; mutant
      1. region e:150-475 [119715]
    14. 1uw9
      automatically matched to d1gk8a1
      complexed with cap, edo, mg; mutant
      1. region h:150-475 [119718]
    15. 1uw9
      automatically matched to d1gk8a1
      complexed with cap, edo, mg; mutant
      1. region k:150-475 [119722]
    16. 1uw9
      automatically matched to d1gk8a1
      complexed with cap, edo, mg; mutant
      1. region o:150-475 [119725]
    17. 1uw9
      automatically matched to d1gk8a1
      complexed with cap, edo, mg; mutant
      1. region r:150-475 [119728]
    18. 1uw9
      automatically matched to d1gk8a1
      complexed with cap, edo, mg; mutant
      1. region v:150-475 [119731]
    19. 2v67
      automatically matched to d1gk8a1
      complexed with cap, edo, mg, mme; mutant
      1. region a:150-475 [152620]
    20. 2v67
      automatically matched to d1gk8a1
      complexed with cap, edo, mg, mme; mutant
      1. region b:150-475 [152622]
    21. 2v67
      automatically matched to d1gk8a1
      complexed with cap, edo, mg, mme; mutant
      1. region c:150-475 [152624]
    22. 2v67
      automatically matched to d1gk8a1
      complexed with cap, edo, mg, mme; mutant
      1. region d:150-475 [152626]
    23. 2v67
      automatically matched to d1gk8a1
      complexed with cap, edo, mg, mme; mutant
      1. region e:150-475 [152628]
    24. 2v67
      automatically matched to d1gk8a1
      complexed with cap, edo, mg, mme; mutant
      1. region f:150-475 [152630]
    25. 2v67
      automatically matched to d1gk8a1
      complexed with cap, edo, mg, mme; mutant
      1. region g:150-475 [152632]
    26. 2v67
      automatically matched to d1gk8a1
      complexed with cap, edo, mg, mme; mutant
      1. region h:150-475 [152634]
    27. 2v63
      automatically matched to d1gk8a1
      complexed with cap, edo, mg, mme; mutant
      1. region a:150-474 [152593]
    28. 2v63
      automatically matched to d1gk8a1
      complexed with cap, edo, mg, mme; mutant
      1. region b:150-474 [152595]
    29. 2v63
      automatically matched to d1gk8a1
      complexed with cap, edo, mg, mme; mutant
      1. region c:150-474 [152597]
    30. 2v63
      automatically matched to d1gk8a1
      complexed with cap, edo, mg, mme; mutant
      1. region d:150-474 [152599]
    31. 2v63
      automatically matched to d1gk8a1
      complexed with cap, edo, mg, mme; mutant
      1. region e:150-474 [152601]
    32. 2v63
      automatically matched to d1gk8a1
      complexed with cap, edo, mg, mme; mutant
      1. region f:150-474 [152603]
    33. 2v63
      automatically matched to d1gk8a1
      complexed with cap, edo, mg, mme; mutant
      1. region g:150-474 [152605]
    34. 2v63
      automatically matched to d1gk8a1
      complexed with cap, edo, mg, mme; mutant
      1. region h:150-474 [152607]
    35. 1uzh
      automatically matched to d1gk8a1
      complexed with cap, edo, mg
      1. region a:150-475 [119790]
    36. 1uzh
      automatically matched to d1gk8a1
      complexed with cap, edo, mg
      1. region b:150-475 [119792]
    37. 1uzh
      automatically matched to d1gk8a1
      complexed with cap, edo, mg
      1. region e:150-475 [119794]
    38. 1uzh
      automatically matched to d1gk8a1
      complexed with cap, edo, mg
      1. region h:150-475 [119796]
    39. 1uzh
      automatically matched to d1gk8a1
      complexed with cap, edo, mg
      1. region k:150-475 [119798]
    40. 1uzh
      automatically matched to d1gk8a1
      complexed with cap, edo, mg
      1. region o:150-475 [119800]
    41. 1uzh
      automatically matched to d1gk8a1
      complexed with cap, edo, mg
      1. region r:150-475 [119802]
    42. 1uzh
      automatically matched to d1gk8a1
      complexed with cap, edo, mg
      1. region v:150-475 [119804]
    43. 2v68
      automatically matched to d1gk8a1
      complexed with cap, edo, mg, mme; mutant
      1. region a:150-475 [152644]
    44. 2v68
      automatically matched to d1gk8a1
      complexed with cap, edo, mg, mme; mutant
      1. region b:150-475 [152646]
    45. 2v68
      automatically matched to d1gk8a1
      complexed with cap, edo, mg, mme; mutant
      1. region c:150-475 [152648]
    46. 2v68
      automatically matched to d1gk8a1
      complexed with cap, edo, mg, mme; mutant
      1. region d:150-475 [152650]
    47. 2v68
      automatically matched to d1gk8a1
      complexed with cap, edo, mg, mme; mutant
      1. region e:150-475 [152652]
    48. 2v68
      automatically matched to d1gk8a1
      complexed with cap, edo, mg, mme; mutant
      1. region f:150-475 [152654]
    49. 2v68
      automatically matched to d1gk8a1
      complexed with cap, edo, mg, mme; mutant
      1. region g:150-475 [152656]
    50. 2v68
      automatically matched to d1gk8a1
      complexed with cap, edo, mg, mme; mutant
      1. region h:150-475 [152658]
    51. 1uwa
      automatically matched to d1gk8a1
      complexed with cap, edo, mg, pyc; mutant
      1. region a:150-475 [119734]
    52. 1uwa
      automatically matched to d1gk8a1
      complexed with cap, edo, mg, pyc; mutant
      1. region b:150-475 [119736]
    53. 1uwa
      automatically matched to d1gk8a1
      complexed with cap, edo, mg, pyc; mutant
      1. region e:150-475 [119739]
    54. 1uwa
      automatically matched to d1gk8a1
      complexed with cap, edo, mg, pyc; mutant
      1. region h:150-475 [119742]
    55. 1uwa
      automatically matched to d1gk8a1
      complexed with cap, edo, mg, pyc; mutant
      1. region k:150-475 [119746]
    56. 1uwa
      automatically matched to d1gk8a1
      complexed with cap, edo, mg, pyc; mutant
      1. region o:150-475 [119749]
    57. 1uwa
      automatically matched to d1gk8a1
      complexed with cap, edo, mg, pyc; mutant
      1. region r:150-475 [119752]
    58. 1uwa
      automatically matched to d1gk8a1
      complexed with cap, edo, mg, pyc; mutant
      1. region v:150-475 [119755]
    59. 1uzd
      automatically matched to d1gk8a1
      complexed with cap, edo, mg
      1. region a:150-475 [119774]
    60. 1uzd
      automatically matched to d1gk8a1
      complexed with cap, edo, mg
      1. region b:150-475 [119776]
    61. 1uzd
      automatically matched to d1gk8a1
      complexed with cap, edo, mg
      1. region e:150-475 [119778]
    62. 1uzd
      automatically matched to d1gk8a1
      complexed with cap, edo, mg
      1. region h:150-475 [119780]
    63. 1uzd
      automatically matched to d1gk8a1
      complexed with cap, edo, mg
      1. region k:150-475 [119782]
    64. 1uzd
      automatically matched to d1gk8a1
      complexed with cap, edo, mg
      1. region o:150-475 [119784]
    65. 1uzd
      automatically matched to d1gk8a1
      complexed with cap, edo, mg
      1. region r:150-475 [119786]
    66. 1uzd
      automatically matched to d1gk8a1
      complexed with cap, edo, mg
      1. region v:150-475 [119788]
    67. 2v69
      automatically matched to d1gk8a1
      complexed with cap, edo, mg, mme; mutant
      1. region a:150-469 [152668]
    68. 2v69
      automatically matched to d1gk8a1
      complexed with cap, edo, mg, mme; mutant
      1. region b:150-469 [152670]
    69. 2v69
      automatically matched to d1gk8a1
      complexed with cap, edo, mg, mme; mutant
      1. region c:150-469 [152672]
    70. 2v69
      automatically matched to d1gk8a1
      complexed with cap, edo, mg, mme; mutant
      1. region d:150-469 [152674]
    71. 2v69
      automatically matched to d1gk8a1
      complexed with cap, edo, mg, mme; mutant
      1. region e:150-469 [152676]
    72. 2v69
      automatically matched to d1gk8a1
      complexed with cap, edo, mg, mme; mutant
      1. region f:150-469 [152678]
    73. 2v69
      automatically matched to d1gk8a1
      complexed with cap, edo, mg, mme; mutant
      1. region g:150-469 [152680]
    74. 2v69
      automatically matched to d1gk8a1
      complexed with cap, edo, mg, mme; mutant
      1. region h:150-469 [152682]
  5. Alcaligenes eutrophus [TaxId: 106590] [51655] (1)
    1. 1bxn
      complexed with po4
      1. region a:151-467 [29376]
      2. region c:151-467 [29377]
      3. region e:151-467 [29378]
      4. region g:151-467 [29379]
  6. Synechococcus sp., strain pcc 6301 [TaxId: 1131] [51656] (16)
    1. 1rbl
      complexed with cap, cbx, mg
      1. region a:148-475 [29380]
    2. 1rbl
      duplicate of 1RBL A:148-475
      complexed with cap, cbx, mg
      1. region b:148-475 [118585]
    3. 1rbl
      duplicate of 1RBL A:148-475
      complexed with cap, cbx, mg
      1. region c:148-475 [118587]
    4. 1rbl
      duplicate of 1RBL A:148-475
      complexed with cap, cbx, mg
      1. region d:148-475 [118589]
    5. 1rbl
      duplicate of 1RBL A:148-475
      complexed with cap, cbx, mg
      1. region e:148-475 [118591]
    6. 1rbl
      duplicate of 1RBL A:148-475
      complexed with cap, cbx, mg
      1. region f:148-475 [118593]
    7. 1rbl
      duplicate of 1RBL A:148-475
      complexed with cap, cbx, mg
      1. region g:148-475 [118595]
    8. 1rbl
      duplicate of 1RBL A:148-475
      complexed with cap, cbx, mg
      1. region h:148-475 [118597]
    9. 1rsc
      complexed with xbp
      1. region a:148-475 [29381]
    10. 1rsc
      duplicate of 1RSC A:148-475
      complexed with xbp
      1. region b:148-475 [118606]
    11. 1rsc
      duplicate of 1RSC A:148-475
      complexed with xbp
      1. region c:148-475 [118608]
    12. 1rsc
      duplicate of 1RSC A:148-475
      complexed with xbp
      1. region d:148-475 [118610]
    13. 1rsc
      duplicate of 1RSC A:148-475
      complexed with xbp
      1. region e:148-475 [118612]
    14. 1rsc
      duplicate of 1RSC A:148-475
      complexed with xbp
      1. region f:148-475 [118614]
    15. 1rsc
      duplicate of 1RSC A:148-475
      complexed with xbp
      1. region g:148-475 [118616]
    16. 1rsc
      duplicate of 1RSC A:148-475
      complexed with xbp
      1. region h:148-475 [118618]
  7. Rhodospirillum rubrum [TaxId: 1085] [51657] (5)
    1. 5rub
      1. region a:138-457 [29382]
      2. region b:138-457 [29383]
    2. 2rus
      complexed with for, mg
      1. region a:138-457 [29384]
      2. region b:138-457 [29385]
    3. 1rus
      complexed with mp3
      1. region a:138-457 [29388]
      2. region b:138-457 [29389]
    4. 9rub
      complexed with cbx, mg, rub
      1. region a:138-460 [29386]
      2. region b:138-459 [29387]
    5. 1rba
      mutant
      1. region a:138-441 [29390]
      2. region b:138-457 [29391]
  8. Archaeon Thermococcus kodakaraensis [TaxId: 311400] [69404] (1)
    1. 1geh
      complexed with so4
      1. region a:137-443 [65181]
      2. region b:137-443 [65183]
      3. region c:137-443 [65185]
      4. region d:137-443 [65187]
      5. region e:137-443 [65189]
  9. Chlorobium tepidum [TaxId: 1097] [117389] (3)
    SQ Q8KBL4 1-428
    1. 1ykw
      mutant
      1. region a:146-428 [123565]
    2. 1ykw
      automatically matched to 1YKW A:146-428
      mutant
      1. region b:146-428 [123567]
    3. 1tel
      1. region a:1146-1428 [112405]
      2. region b:2146-2428 [112407]
  10. Rice (Oryza sativa) [TaxId: 4530] [117390] (1)
    SQ P12089
    1. 1wdd
      complexed with cap, gol, mg, mme
      1. region a:151-475 [114528]
      2. region e:151-475 [114530]
  11. Archaeon Halothiobacillus neapolitanus [TaxId: 927] [141849] (1)
    SQ O85040 143-460
    1. 1svd
      complexed with gol, so4
      1. region a:143-460 [119057]
  12. Archaeon Pyrococcus horikoshii [TaxId: 53953] [141850] (10)
    SQ O58677 134-424
    1. 2d69
      automatically matched to 2CWX A:134-424
      complexed with so4
      1. region a:134-424 [131292]
    2. 2d69
      automatically matched to 2CWX A:134-424
      complexed with so4
      1. region b:134-424 [131294]
    3. 2d69
      automatically matched to 2CWX A:134-424
      complexed with so4
      1. region d:134-419 [131296]
    4. 2d69
      automatically matched to 2CWX A:134-424
      complexed with so4
      1. region e:134-418 [131298]
    5. 2cwx
      1. region a:134-424 [130956]
    6. 2cwx
      automatically matched to 2CWX A:134-424
      1. region e:134-417 [130958]
    7. 2cxe
      automatically matched to 2CWX A:134-424
      1. region a:134-424 [130996]
    8. 2cxe
      automatically matched to 2CWX A:134-424
      1. region b:134-424 [130998]
    9. 2cxe
      automatically matched to 2CWX A:134-424
      1. region c:134-424 [131000]
    10. 2cxe
      automatically matched to 2CWX A:134-424
      1. region d:134-424 [131002]