Structural Classification of Proteins

Family: RuBisCo, large subunit, C-terminal domain

: N-terminal domain is alpha+beta

Lineage:

Root: scop
Class: Alpha and beta proteins (a/b) [51349]
Mainly parallel beta sheets (beta-alpha-beta units)
Fold: TIM beta/alpha-barrel [51350]
contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
the first seven superfamilies have similar phosphate-binding sites
Superfamily: RuBisCo, C-terminal domain [51649]
uperfamily
Family: RuBisCo, large subunit, C-terminal domain [51650]
N-terminal domain is alpha+beta

Protein Domains:

Ribulose 1,5-bisphosphate carboxylase-oxygenase [51651]
1. Tobacco (Nicotiana tabacum), variant turkish samsun [TaxId: 4097] [51652] (5)
  1. 3rub
    complexed with so4
    1. region l:148-467 [29326]
  2. 1ej7
    complexed with po4
    1. region l:148-474 [29327]
  3. 1rlc
    complexed with cap
    1. region l:148-467 [29330]
  4. 1rld
    1. region a:148-467 [29328]
    2. region b:148-467 [29329]
  5. 4rub
    complexed with cap, cbx, mg
    1. region a:148-473 [29331]
    2. region b:148-473 [29332]
    3. region c:148-473 [29333]
    4. region d:148-473 [29334]
2. Spinach (Spinacia oleracea) [TaxId: 3562] [51653] (11)
  1. 8ruc
    complexed with cap, mg
    1. region a:148-475 [29339]
    2. region c:148-475 [29340]
    3. region e:148-475 [29341]
    4. region g:148-475 [29342]
  2. 1ir1
    complexed with cap, kcx, mg, mme
    1. region a:148-475 [71282]
    2. region b:148-475 [71284]
    3. region c:148-475 [71286]
    4. region d:148-475 [71288]
  3. 1rbo
    complexed with cap
    1. region l:148-475 [29343]
    2. region b:148-475 [29344]
    3. region e:148-475 [29345]
    4. region h:148-475 [29346]
  4. 1aa1
    complexed with 3pg, mg
    1. region l:148-463 [29347]
    2. region b:148-463 [29348]
    3. region e:148-463 [29349]
    4. region h:148-463 [29350]
  5. 1rxo
    complexed with ca, rub
    1. region l:148-463 [29351]
    2. region b:148-463 [29352]
    3. region e:148-463 [29353]
    4. region h:148-463 [29354]
  6. 1aus
    complexed with cbx, mg
    1. region l:148-463 [29355]
  7. 1aus
    duplicate of 1AUS L:148-463
    complexed with cbx, mg
    1. region m:148-463 [118409]
  8. 1aus
    duplicate of 1AUS L:148-463
    complexed with cbx, mg
    1. region n:148-463 [118411]
  9. 1aus
    duplicate of 1AUS L:148-463
    complexed with cbx, mg
    1. region o:148-463 [118413]
  10. 1rco
    complexed with xdp
    1. region l:148-475 [29356]
    2. region b:148-475 [29357]
    3. region e:148-475 [29358]
    4. region h:148-475 [29359]
    5. region k:148-475 [29360]
    6. region o:148-475 [29361]
    7. region r:148-475 [29362]
    8. region v:148-475 [29363]
  11. 1rcx
    complexed with rub
    1. region l:148-475 [29364]
    2. region b:148-475 [29365]
    3. region e:148-475 [29366]
    4. region h:148-475 [29367]
    5. region k:148-475 [29368]
    6. region o:148-475 [29369]
    7. region r:148-475 [29370]
    8. region v:148-475 [29371]
3. Galdieria partita [TaxId: 83374] [51654] (2)
  1. 1bwv
    complexed with cap, mg
    1. region a:150-478 [29372]
    2. region c:150-478 [29373]
    3. region e:150-478 [29374]
    4. region g:150-478 [29375]
  2. 1iwa
    complexed with so4
    1. region a:150-478 [83726]
    2. region c:150-478 [83729]
    3. region e:150-478 [83732]
    4. region g:150-478 [83735]
    5. region i:150-478 [83738]
    6. region k:150-478 [83741]
    7. region m:150-478 [83744]
    8. region o:150-478 [83747]
4. Chlamydomonas reinhardtii [TaxId: 3055] [69403] (74)
  1. 1gk8
    complexed with cap, egl, mg, mme
    1. region a:150-475 [65234]
    2. region c:150-475 [65236]
    3. region e:150-475 [65238]
    4. region g:150-475 [65240]
  2. 2v6a
    automatically matched to d1gk8a1
    complexed with cap, edo, mg, mme; mutant
    1. region a:150-475 [152692]
  3. 2v6a
    automatically matched to d1gk8a1
    complexed with cap, edo, mg, mme; mutant
    1. region b:150-475 [152694]
  4. 2v6a
    automatically matched to d1gk8a1
    complexed with cap, edo, mg, mme; mutant
    1. region c:150-475 [152696]
  5. 2v6a
    automatically matched to d1gk8a1
    complexed with cap, edo, mg, mme; mutant
    1. region d:150-475 [152698]
  6. 2v6a
    automatically matched to d1gk8a1
    complexed with cap, edo, mg, mme; mutant
    1. region e:150-475 [152700]
  7. 2v6a
    automatically matched to d1gk8a1
    complexed with cap, edo, mg, mme; mutant
    1. region f:150-475 [152702]
  8. 2v6a
    automatically matched to d1gk8a1
    complexed with cap, edo, mg, mme; mutant
    1. region g:150-475 [152704]
  9. 2v6a
    automatically matched to d1gk8a1
    complexed with cap, edo, mg, mme; mutant
    1. region h:150-475 [152706]
  10. 1ir2
    complexed with cap, cry, hyp, kcx, mg, mme, smc
    1. region a:150-475 [71302]
    2. region b:150-475 [71304]
    3. region c:150-475 [71306]
    4. region d:150-475 [71308]
    5. region e:150-475 [71310]
    6. region f:150-475 [71312]
    7. region g:150-475 [71314]
    8. region h:150-475 [71316]
    9. region s:150-475 [71326]
    10. region t:150-475 [71328]
    11. region u:150-475 [71330]
    12. region v:150-475 [71332]
    13. region w:150-475 [71334]
    14. region x:150-475 [71336]
    15. region y:150-475 [71338]
    16. region z:150-475 [71340]
  11. 1uw9
    automatically matched to d1gk8a1
    complexed with cap, edo, mg; mutant
    1. region a:150-475 [119710]
  12. 1uw9
    automatically matched to d1gk8a1
    complexed with cap, edo, mg; mutant
    1. region b:150-475 [119712]
  13. 1uw9
    automatically matched to d1gk8a1
    complexed with cap, edo, mg; mutant
    1. region e:150-475 [119715]
  14. 1uw9
    automatically matched to d1gk8a1
    complexed with cap, edo, mg; mutant
    1. region h:150-475 [119718]
  15. 1uw9
    automatically matched to d1gk8a1
    complexed with cap, edo, mg; mutant
    1. region k:150-475 [119722]
  16. 1uw9
    automatically matched to d1gk8a1
    complexed with cap, edo, mg; mutant
    1. region o:150-475 [119725]
  17. 1uw9
    automatically matched to d1gk8a1
    complexed with cap, edo, mg; mutant
    1. region r:150-475 [119728]
  18. 1uw9
    automatically matched to d1gk8a1
    complexed with cap, edo, mg; mutant
    1. region v:150-475 [119731]
  19. 2v67
    automatically matched to d1gk8a1
    complexed with cap, edo, mg, mme; mutant
    1. region a:150-475 [152620]
  20. 2v67
    automatically matched to d1gk8a1
    complexed with cap, edo, mg, mme; mutant
    1. region b:150-475 [152622]
  21. 2v67
    automatically matched to d1gk8a1
    complexed with cap, edo, mg, mme; mutant
    1. region c:150-475 [152624]
  22. 2v67
    automatically matched to d1gk8a1
    complexed with cap, edo, mg, mme; mutant
    1. region d:150-475 [152626]
  23. 2v67
    automatically matched to d1gk8a1
    complexed with cap, edo, mg, mme; mutant
    1. region e:150-475 [152628]
  24. 2v67
    automatically matched to d1gk8a1
    complexed with cap, edo, mg, mme; mutant
    1. region f:150-475 [152630]
  25. 2v67
    automatically matched to d1gk8a1
    complexed with cap, edo, mg, mme; mutant
    1. region g:150-475 [152632]
  26. 2v67
    automatically matched to d1gk8a1
    complexed with cap, edo, mg, mme; mutant
    1. region h:150-475 [152634]
  27. 2v63
    automatically matched to d1gk8a1
    complexed with cap, edo, mg, mme; mutant
    1. region a:150-474 [152593]
  28. 2v63
    automatically matched to d1gk8a1
    complexed with cap, edo, mg, mme; mutant
    1. region b:150-474 [152595]
  29. 2v63
    automatically matched to d1gk8a1
    complexed with cap, edo, mg, mme; mutant
    1. region c:150-474 [152597]
  30. 2v63
    automatically matched to d1gk8a1
    complexed with cap, edo, mg, mme; mutant
    1. region d:150-474 [152599]
  31. 2v63
    automatically matched to d1gk8a1
    complexed with cap, edo, mg, mme; mutant
    1. region e:150-474 [152601]
  32. 2v63
    automatically matched to d1gk8a1
    complexed with cap, edo, mg, mme; mutant
    1. region f:150-474 [152603]
  33. 2v63
    automatically matched to d1gk8a1
    complexed with cap, edo, mg, mme; mutant
    1. region g:150-474 [152605]
  34. 2v63
    automatically matched to d1gk8a1
    complexed with cap, edo, mg, mme; mutant
    1. region h:150-474 [152607]
  35. 1uzh
    automatically matched to d1gk8a1
    complexed with cap, edo, mg
    1. region a:150-475 [119790]
  36. 1uzh
    automatically matched to d1gk8a1
    complexed with cap, edo, mg
    1. region b:150-475 [119792]
  37. 1uzh
    automatically matched to d1gk8a1
    complexed with cap, edo, mg
    1. region e:150-475 [119794]
  38. 1uzh
    automatically matched to d1gk8a1
    complexed with cap, edo, mg
    1. region h:150-475 [119796]
  39. 1uzh
    automatically matched to d1gk8a1
    complexed with cap, edo, mg
    1. region k:150-475 [119798]
  40. 1uzh
    automatically matched to d1gk8a1
    complexed with cap, edo, mg
    1. region o:150-475 [119800]
  41. 1uzh
    automatically matched to d1gk8a1
    complexed with cap, edo, mg
    1. region r:150-475 [119802]
  42. 1uzh
    automatically matched to d1gk8a1
    complexed with cap, edo, mg
    1. region v:150-475 [119804]
  43. 2v68
    automatically matched to d1gk8a1
    complexed with cap, edo, mg, mme; mutant
    1. region a:150-475 [152644]
  44. 2v68
    automatically matched to d1gk8a1
    complexed with cap, edo, mg, mme; mutant
    1. region b:150-475 [152646]
  45. 2v68
    automatically matched to d1gk8a1
    complexed with cap, edo, mg, mme; mutant
    1. region c:150-475 [152648]
  46. 2v68
    automatically matched to d1gk8a1
    complexed with cap, edo, mg, mme; mutant
    1. region d:150-475 [152650]
  47. 2v68
    automatically matched to d1gk8a1
    complexed with cap, edo, mg, mme; mutant
    1. region e:150-475 [152652]
  48. 2v68
    automatically matched to d1gk8a1
    complexed with cap, edo, mg, mme; mutant
    1. region f:150-475 [152654]
  49. 2v68
    automatically matched to d1gk8a1
    complexed with cap, edo, mg, mme; mutant
    1. region g:150-475 [152656]
  50. 2v68
    automatically matched to d1gk8a1
    complexed with cap, edo, mg, mme; mutant
    1. region h:150-475 [152658]
  51. 1uwa
    automatically matched to d1gk8a1
    complexed with cap, edo, mg, pyc; mutant
    1. region a:150-475 [119734]
  52. 1uwa
    automatically matched to d1gk8a1
    complexed with cap, edo, mg, pyc; mutant
    1. region b:150-475 [119736]
  53. 1uwa
    automatically matched to d1gk8a1
    complexed with cap, edo, mg, pyc; mutant
    1. region e:150-475 [119739]
  54. 1uwa
    automatically matched to d1gk8a1
    complexed with cap, edo, mg, pyc; mutant
    1. region h:150-475 [119742]
  55. 1uwa
    automatically matched to d1gk8a1
    complexed with cap, edo, mg, pyc; mutant
    1. region k:150-475 [119746]
  56. 1uwa
    automatically matched to d1gk8a1
    complexed with cap, edo, mg, pyc; mutant
    1. region o:150-475 [119749]
  57. 1uwa
    automatically matched to d1gk8a1
    complexed with cap, edo, mg, pyc; mutant
    1. region r:150-475 [119752]
  58. 1uwa
    automatically matched to d1gk8a1
    complexed with cap, edo, mg, pyc; mutant
    1. region v:150-475 [119755]
  59. 1uzd
    automatically matched to d1gk8a1
    complexed with cap, edo, mg
    1. region a:150-475 [119774]
  60. 1uzd
    automatically matched to d1gk8a1
    complexed with cap, edo, mg
    1. region b:150-475 [119776]
  61. 1uzd
    automatically matched to d1gk8a1
    complexed with cap, edo, mg
    1. region e:150-475 [119778]
  62. 1uzd
    automatically matched to d1gk8a1
    complexed with cap, edo, mg
    1. region h:150-475 [119780]
  63. 1uzd
    automatically matched to d1gk8a1
    complexed with cap, edo, mg
    1. region k:150-475 [119782]
  64. 1uzd
    automatically matched to d1gk8a1
    complexed with cap, edo, mg
    1. region o:150-475 [119784]
  65. 1uzd
    automatically matched to d1gk8a1
    complexed with cap, edo, mg
    1. region r:150-475 [119786]
  66. 1uzd
    automatically matched to d1gk8a1
    complexed with cap, edo, mg
    1. region v:150-475 [119788]
  67. 2v69
    automatically matched to d1gk8a1
    complexed with cap, edo, mg, mme; mutant
    1. region a:150-469 [152668]
  68. 2v69
    automatically matched to d1gk8a1
    complexed with cap, edo, mg, mme; mutant
    1. region b:150-469 [152670]
  69. 2v69
    automatically matched to d1gk8a1
    complexed with cap, edo, mg, mme; mutant
    1. region c:150-469 [152672]
  70. 2v69
    automatically matched to d1gk8a1
    complexed with cap, edo, mg, mme; mutant
    1. region d:150-469 [152674]
  71. 2v69
    automatically matched to d1gk8a1
    complexed with cap, edo, mg, mme; mutant
    1. region e:150-469 [152676]
  72. 2v69
    automatically matched to d1gk8a1
    complexed with cap, edo, mg, mme; mutant
    1. region f:150-469 [152678]
  73. 2v69
    automatically matched to d1gk8a1
    complexed with cap, edo, mg, mme; mutant
    1. region g:150-469 [152680]
  74. 2v69
    automatically matched to d1gk8a1
    complexed with cap, edo, mg, mme; mutant
    1. region h:150-469 [152682]
5. Alcaligenes eutrophus [TaxId: 106590] [51655] (1)
  1. 1bxn
    complexed with po4
    1. region a:151-467 [29376]
    2. region c:151-467 [29377]
    3. region e:151-467 [29378]
    4. region g:151-467 [29379]
6. Synechococcus sp., strain pcc 6301 [TaxId: 1131] [51656] (16)
  1. 1rbl
    complexed with cap, cbx, mg
    1. region a:148-475 [29380]
  2. 1rbl
    duplicate of 1RBL A:148-475
    complexed with cap, cbx, mg
    1. region b:148-475 [118585]
  3. 1rbl
    duplicate of 1RBL A:148-475
    complexed with cap, cbx, mg
    1. region c:148-475 [118587]
  4. 1rbl
    duplicate of 1RBL A:148-475
    complexed with cap, cbx, mg
    1. region d:148-475 [118589]
  5. 1rbl
    duplicate of 1RBL A:148-475
    complexed with cap, cbx, mg
    1. region e:148-475 [118591]
  6. 1rbl
    duplicate of 1RBL A:148-475
    complexed with cap, cbx, mg
    1. region f:148-475 [118593]
  7. 1rbl
    duplicate of 1RBL A:148-475
    complexed with cap, cbx, mg
    1. region g:148-475 [118595]
  8. 1rbl
    duplicate of 1RBL A:148-475
    complexed with cap, cbx, mg
    1. region h:148-475 [118597]
  9. 1rsc
    complexed with xbp
    1. region a:148-475 [29381]
  10. 1rsc
    duplicate of 1RSC A:148-475
    complexed with xbp
    1. region b:148-475 [118606]
  11. 1rsc
    duplicate of 1RSC A:148-475
    complexed with xbp
    1. region c:148-475 [118608]
  12. 1rsc
    duplicate of 1RSC A:148-475
    complexed with xbp
    1. region d:148-475 [118610]
  13. 1rsc
    duplicate of 1RSC A:148-475
    complexed with xbp
    1. region e:148-475 [118612]
  14. 1rsc
    duplicate of 1RSC A:148-475
    complexed with xbp
    1. region f:148-475 [118614]
  15. 1rsc
    duplicate of 1RSC A:148-475
    complexed with xbp
    1. region g:148-475 [118616]
  16. 1rsc
    duplicate of 1RSC A:148-475
    complexed with xbp
    1. region h:148-475 [118618]
7. Rhodospirillum rubrum [TaxId: 1085] [51657] (5)
  1. 5rub
    1. region a:138-457 [29382]
    2. region b:138-457 [29383]
  2. 2rus
    complexed with for, mg
    1. region a:138-457 [29384]
    2. region b:138-457 [29385]
  3. 1rus
    complexed with mp3
    1. region a:138-457 [29388]
    2. region b:138-457 [29389]
  4. 9rub
    complexed with cbx, mg, rub
    1. region a:138-460 [29386]
    2. region b:138-459 [29387]
  5. 1rba
    mutant
    1. region a:138-441 [29390]
    2. region b:138-457 [29391]
8. Archaeon Thermococcus kodakaraensis [TaxId: 311400] [69404] (1)
  1. 1geh
    complexed with so4
    1. region a:137-443 [65181]
    2. region b:137-443 [65183]
    3. region c:137-443 [65185]
    4. region d:137-443 [65187]
    5. region e:137-443 [65189]
9. Chlorobium tepidum [TaxId: 1097] [117389] (3)
  SQ Q8KBL4 1-428
  1. 1ykw
    mutant
    1. region a:146-428 [123565]
  2. 1ykw
    automatically matched to 1YKW A:146-428
    mutant
    1. region b:146-428 [123567]
  3. 1tel
    1. region a:1146-1428 [112405]
    2. region b:2146-2428 [112407]
10. Rice (Oryza sativa) [TaxId: 4530] [117390] (1)
  SQ P12089
  1. 1wdd
    complexed with cap, gol, mg, mme
    1. region a:151-475 [114528]
    2. region e:151-475 [114530]
11. Archaeon Halothiobacillus neapolitanus [TaxId: 927] [141849] (1)
  SQ O85040 143-460
  1. 1svd
    complexed with gol, so4
    1. region a:143-460 [119057]
12. Archaeon Pyrococcus horikoshii [TaxId: 53953] [141850] (10)
  SQ O58677 134-424
  1. 2d69
    automatically matched to 2CWX A:134-424
    complexed with so4
    1. region a:134-424 [131292]
  2. 2d69
    automatically matched to 2CWX A:134-424
    complexed with so4
    1. region b:134-424 [131294]
  3. 2d69
    automatically matched to 2CWX A:134-424
    complexed with so4
    1. region d:134-419 [131296]
  4. 2d69
    automatically matched to 2CWX A:134-424
    complexed with so4
    1. region e:134-418 [131298]
  5. 2cwx
    1. region a:134-424 [130956]
  6. 2cwx
    automatically matched to 2CWX A:134-424
    1. region e:134-417 [130958]
  7. 2cxe
    automatically matched to 2CWX A:134-424
    1. region a:134-424 [130996]
  8. 2cxe
    automatically matched to 2CWX A:134-424
    1. region b:134-424 [130998]
  9. 2cxe
    automatically matched to 2CWX A:134-424
    1. region c:134-424 [131000]
  10. 2cxe
    automatically matched to 2CWX A:134-424
    1. region d:134-424 [131002]