Structural Classification of Proteins
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Superfamily: Xylose isomerase-like

different families share similar but non-identical metal-binding sites
link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: TIM beta/alpha-barrel [51350]
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. Superfamily: Xylose isomerase-like [51658]
    different families share similar but non-identical metal-binding sites
    link to SUPERFAMILY database - Superfamily

Families:

  1. Endonuclease IV [51659] (2)
    1. Endonuclease IV [51660]
      DNA repair enzyme
      1. Escherichia coli [TaxId: 562] [51661] (2)
        1. 1qtw picpic
          complexed with zn
          1. chain a [29392] picpiclink
        2. 1qum picpic
          protein/DNA complex; complexed with 3dr, zn
          1. chain a [29393] picpiclink
      2. Bacillus anthracis [TaxId: 1392] [141851] (1)
        SQ Q81LV1 2-298
        1. 1xp3 picpic
          complexed with so4, zn
          1. region a:2-298 [122210] picpiclink
  2. IolI-like [75090] (3)
    1. Hypothetical protein IolI [75091]
      1. Bacillus subtilis [TaxId: 1423] [75092] (2)
        1. 1i60 picpic
          Structural genomics
          complexed with mse
          1. chain a [71118] picpiclink
        2. 1i6n picpic
          Structural genomics
          complexed with mse, zn
          1. chain a [71119] picpiclink
    2. Hypothetical protein Lmo2234 [141852]
      1. Listeria monocytogenes [TaxId: 1639] [141853] (2)
        SQ Q8Y542 10-284
        1. 2g0w picpic
          complexed with mg, pg4
          1. region a:10-284 [134503] picpiclink
        2. 2g0w picpic
          automatically matched to 2G0W A:10-284
          complexed with mg, pg4
          1. region b:10-283 [134504] picpiclink
    3. Putative cytoplasmic protein STM4435 [159419]
      1. Salmonella typhimurium [TaxId: 90371] [159420] (1)
        SQ Q8ZK48 1-271
        1. 2q02 picpic
          complexed with cl, unl, zn
          1. region a:1-271 [149978] picpiclink
  3. Hypothetical protein YgbM (EC1530) [75093] (1)
    1. Hypothetical protein YgbM (EC1530) [75094]
      1. Escherichia coli [TaxId: 562] [75095] (1)
        1. 1k77 picpic
          Structural genomics
          complexed with fmt, gol, mg, mse
          1. chain a [72096] picpiclink
  4. L-rhamnose isomerase [51662] (1)
    1. L-rhamnose isomerase [51663]
      1. Escherichia coli [TaxId: 562] [51664] (3)
        1. 1d8w picpic
          complexed with zn
          1. chain a [29394] picpiclink
          2. chain b [29395] picpiclink
          3. chain c [29396] picpiclink
          4. chain d [29397] picpiclink
        2. 1de6 picpic
          complexed with mn, rns, zn
          1. chain a [29398] picpiclink
          2. chain b [29399] picpiclink
          3. chain c [29400] picpiclink
          4. chain d [29401] picpiclink
        3. 1de5 picpic
          complexed with rnt, zn
          1. chain a [29402] picpiclink
          2. chain b [29403] picpiclink
          3. chain c [29404] picpiclink
          4. chain d [29405] picpiclink
  5. Xylose isomerase [51665] (12)
    1. D-xylose isomerase [51666]
      1. Streptomyces albus [TaxId: 1888] [51667] (1)
        1. 6xia picpic
          1. chain a [29406] picpiclink
      2. Streptomyces murinus [TaxId: 33900] [51668] (1)
        1. 1dxi picpic
          complexed with mg
          1. chain a [29407] picpiclink
          2. chain b [29408] picpiclink
      3. Streptomyces olivochromogenes [TaxId: 1963] [51669] (9)
        1. 1muw picpic
          atomic resolution structure
          complexed with mg, mn, oh
          1. chain a [79495] picpiclink
        2. 1s5n picpic
          complexed with mn, na, oh, xyl
          1. chain a [98566] picpiclink
        3. 1s5m picpic
          complexed with agc, mn, na
          1. chain a [98565] picpiclink
        4. 1xya picpic
          complexed with mg, oh
          1. chain a [29411] picpiclink
          2. chain b [29412] picpiclink
        5. 2gyi picpic
          complexed with hya, mg
          1. chain a [29409] picpiclink
          2. chain b [29410] picpiclink
        6. 1xyl picpic
          complexed with mg, oh; mutant
          1. chain a [29413] picpiclink
          2. chain b [29414] picpiclink
        7. 1xyb picpic
          complexed with glo, mg
          1. chain a [29417] picpiclink
          2. chain b [29418] picpiclink
        8. 1xym picpic
          complexed with glo, mg, oh; mutant
          1. chain a [29415] picpiclink
          2. chain b [29416] picpiclink
        9. 1xyc picpic
          complexed with 3mf, mg
          1. chain a [29419] picpiclink
          2. chain b [29420] picpiclink
      4. Streptomyces rubiginosus [TaxId: 1929] [51670] (24)
        1. 2glk picpic
          automatically matched to d1mnza_
          complexed with gol, mn
          1. region a:2-388 [135344] picpiclink
        2. 1mnz picpic
          atomic resolution structure
          complexed with ca, mg, mpd, trs
          1. chain a [79328] picpiclink
        3. 1o1h picpic
          complexed with ca, cl, kr, mg, mpd, trs
          1. chain a [81044] picpiclink
          2. chain b [81045] picpiclink
        4. 1oad picpic
          complexed with mo1, mpd, mqd, mrd, mw1, trs
          1. chain a [81253] picpiclink
          2. chain b [81254] picpiclink
        5. 4xis picpic
          complexed with mn, xls, xys
          1. chain a [29421] picpiclink
        6. 1gw9 picpic
          complexed with ca, iod, lxc
          1. chain a [70658] picpiclink
        7. 1xis picpic
          complexed with mn
          1. chain a [29422] picpiclink
        8. 3xis picpic
          complexed with mg, xls, xys
          1. chain a [29423] picpiclink
        9. 1xic picpic
          complexed with mn, xls
          1. chain a [29425] picpiclink
        10. 1xib picpic
          complexed with mn
          1. chain a [29424] picpiclink
        11. 2xis picpic
          complexed with mg, xyl
          1. chain a [29427] picpiclink
        12. 1xif picpic
          complexed with glc, mn
          1. chain a [29426] picpiclink
        13. 1xii picpic
          complexed with mn, xul
          1. chain a [29428] picpiclink
        14. 1xid picpic
          complexed with asc, mn
          1. chain a [29431] picpiclink
        15. 1xij picpic
          complexed with mn, the
          1. chain a [29429] picpiclink
        16. 2g4j picpic
          automatically matched to d1mnza_
          complexed with ca, cl, mg
          1. region a:1-386 [134596] picpiclink
        17. 2gub picpic
          automatically matched to d1mnza_
          1. region a:3-387 [135729] picpiclink
        18. 1xig picpic
          complexed with mn, xyl
          1. chain a [29432] picpiclink
        19. 1xih picpic
          complexed with mn, sor
          1. chain a [29430] picpiclink
        20. 1xie picpic
          complexed with aso, mn
          1. chain a [29433] picpiclink
        21. 9xia picpic
          complexed with dfr, mn
          1. chain a [29434] picpiclink
        22. 8xia picpic
          complexed with mn, xls
          1. chain a [29435] picpiclink
        23. 3cwh picpic
          automatically matched to d1mnza_
          complexed with mg, oh, xul
          1. region a:2-388 [157051] picpiclink
        24. 2gve picpic
          automatically matched to d1mnza_
          complexed with co
          1. region a:2-388 [135775] picpiclink
      5. Streptomyces diastaticus, M1033 [TaxId: 1956] [51671] (2)
        1. 1qt1 picpic
          complexed with co, ocl
          1. chain a [29436] picpiclink
          2. chain b [29437] picpiclink
        2. 1clk picpic
          complexed with co, mg
          1. chain a [29438] picpiclink
      6. Arthrobacter, strain b3728 [TaxId: 1663] [51672] (17)
        1. 4xia picpic
          complexed with mg, sor
          1. chain a [29439] picpiclink
          2. chain b [29440] picpiclink
        2. 1xlm picpic
          complexed with al, xyl; mutant
          1. chain a [29441] picpiclink
          2. chain b [29442] picpiclink
        3. 1xld picpic
          complexed with mn, xls
          1. chain a [29449] picpiclink
          2. chain b [29450] picpiclink
        4. 1xla picpic
          1. chain a [29445] picpiclink
          2. chain b [29446] picpiclink
        5. 1xli picpic
          complexed with glt, mn
          1. chain a [29455] picpiclink
          2. chain b [29456] picpiclink
        6. 1did picpic
          complexed with dig, mn
          1. chain a [29459] picpiclink
          2. chain b [29460] picpiclink
        7. 1xlf picpic
          complexed with gco, mn
          1. chain a [29451] picpiclink
          2. chain b [29452] picpiclink
        8. 5xia picpic
          complexed with mg, xyl
          1. chain a [29457] picpiclink
          2. chain b [29458] picpiclink
        9. 1die picpic
          complexed with dnj, mg
          1. chain a [29443] picpiclink
          2. chain b [29444] picpiclink
        10. 1xlh picpic
          complexed with al
          1. chain a [29453] picpiclink
          2. chain b [29454] picpiclink
        11. 1xlc picpic
          complexed with mg, xls
          1. chain a [29447] picpiclink
          2. chain b [29448] picpiclink
        12. 1xlj picpic
          complexed with mn, xyl
          1. chain a [29463] picpiclink
          2. chain b [29464] picpiclink
        13. 1xlg picpic
          complexed with al, mg, xls
          1. chain a [29461] picpiclink
          2. chain b [29462] picpiclink
        14. 1xlb picpic
          complexed with mg
          1. chain a [29465] picpiclink
          2. chain b [29466] picpiclink
        15. 1xll picpic
          complexed with zn
          1. chain a [29467] picpiclink
          2. chain b [29468] picpiclink
        16. 1xlk picpic
          complexed with mn
          1. chain a [29469] picpiclink
          2. chain b [29470] picpiclink
        17. 1xle picpic
          complexed with mn
          1. chain a [29471] picpiclink
          2. chain b [29472] picpiclink
      7. Actinoplanes missouriensis [TaxId: 1866] [51673] (14)
        1. 1xim picpic
          complexed with co, xyl
          1. chain a [29473] picpiclink
          2. chain b [29474] picpiclink
          3. chain c [29475] picpiclink
          4. chain d [29476] picpiclink
        2. 3xim picpic
          complexed with co, sor; mutant
          1. chain a [29477] picpiclink
          2. chain b [29478] picpiclink
          3. chain c [29479] picpiclink
          4. chain d [29480] picpiclink
        3. 4xim picpic
          complexed with co
          1. chain a [29485] picpiclink
          2. chain b [29486] picpiclink
          3. chain c [29487] picpiclink
          4. chain d [29488] picpiclink
        4. 5xin picpic
          complexed with mg, xls; mutant
          1. chain a [29481] picpiclink
          2. chain b [29482] picpiclink
          3. chain c [29483] picpiclink
          4. chain d [29484] picpiclink
        5. 3xin picpic
          mutant
          1. chain a [29489] picpiclink
          2. chain b [29490] picpiclink
          3. chain c [29491] picpiclink
          4. chain d [29492] picpiclink
        6. 1xin picpic
          complexed with mg, xls; mutant
          1. chain a [29513] picpiclink
          2. chain b [29514] picpiclink
          3. chain c [29515] picpiclink
          4. chain d [29516] picpiclink
        7. 2xim picpic
          complexed with mg, xls; mutant
          1. chain a [29497] picpiclink
          2. chain b [29498] picpiclink
          3. chain c [29499] picpiclink
          4. chain d [29500] picpiclink
        8. 2xin picpic
          complexed with co, sor; mutant
          1. chain a [29493] picpiclink
          2. chain b [29494] picpiclink
          3. chain c [29495] picpiclink
          4. chain d [29496] picpiclink
        9. 9xim picpic
          complexed with mn, xls; mutant
          1. chain a [29505] picpiclink
          2. chain b [29506] picpiclink
          3. chain c [29507] picpiclink
          4. chain d [29508] picpiclink
        10. 7xim picpic
          1. chain a [29501] picpiclink
          2. chain b [29502] picpiclink
          3. chain c [29503] picpiclink
          4. chain d [29504] picpiclink
        11. 8xim picpic
          complexed with mg, xls; mutant
          1. chain a [29509] picpiclink
          2. chain b [29510] picpiclink
          3. chain c [29511] picpiclink
          4. chain d [29512] picpiclink
        12. 6xim picpic
          complexed with mg, xls
          1. chain a [29517] picpiclink
          2. chain b [29518] picpiclink
          3. chain c [29519] picpiclink
          4. chain d [29520] picpiclink
        13. 5xim picpic
          complexed with mg, sor
          1. chain a [29521] picpiclink
          2. chain b [29522] picpiclink
          3. chain c [29523] picpiclink
          4. chain d [29524] picpiclink
        14. 1bhw picpic
          mutant
          1. chain a [29525] picpiclink
          2. chain b [29526] picpiclink
          3. chain c [29527] picpiclink
          4. chain d [29528] picpiclink
      8. Clostridium thermosulfurogenes, also known as Thermoanaerobacter thermosulfurigenes [TaxId: 33950] [51674] (1)
        1. 1a0c picpic
          complexed with co
          1. chain a [29529] picpiclink
          2. chain b [29530] picpiclink
          3. chain c [29531] picpiclink
          4. chain d [29532] picpiclink
      9. Bacillus stearothermophilus [TaxId: 1422] [51675] (1)
        1. 1a0d picpic
          complexed with mn
          1. chain a [29533] picpiclink
          2. chain b [29534] picpiclink
          3. chain c [29535] picpiclink
          4. chain d [29536] picpiclink
      10. Thermotoga neapolitana [TaxId: 2337] [51676] (1)
        1. 1a0e picpic
          complexed with co
          1. chain a [29537] picpiclink
          2. chain d [29538] picpiclink
      11. Thermus aquaticus, subsp. Caldophilus [TaxId: 271] [51677] (1)
        1. 1bxc picpic
          1. chain a [29539] picpiclink
          2. chain b [29540] picpiclink
          3. chain c [29541] picpiclink
          4. chain d [29542] picpiclink
      12. Thermus aquaticus, subsp. Thermophilus [TaxId: 271] [51678] (1)
        1. 1bxb picpic
          1. chain a [29543] picpiclink
          2. chain b [29544] picpiclink
          3. chain c [29545] picpiclink
          4. chain d [29546] picpiclink
  6. UxuA-like [110377] (1)
    Pfam 03786
    1. Mannonate dehydratase UxuA [110378]
      1. Enterococcus faecalis (Streptococcus faecalis) [TaxId: 1351] [110379] (1)
        SQ Q82ZC9
        1. 1tz9 picpic
          Structural genomics target
          1. chain a [107466] picpiclink
          2. chain b [107467] picpiclink
  7. KguE-like [141854] (1)
    part of Pfam 01261
    1. Hypothetical protein PA2260 [141855]
      2-ketogluconate utilization operon protein KguE
      1. Pseudomonas aeruginosa [TaxId: 287] [141856] (3)
        SQ Q9I1L3 3-252
        1. 1yx1 picpic
          complexed with ipa, na
          1. region a:3-252 [124169] picpiclink
        2. 1yx1 picpic
          automatically matched to 1YX1 A:3-252
          complexed with ipa, na
          1. region b:3-252 [124170] picpiclink
        3. 1yx1 picpic
          automatically matched to 1YX1 A:3-252
          complexed with ipa, na
          1. region c:3-252 [124171] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk