Structural Classification of Proteins

Family: Xylose isomerase

Lineage:

Root: scop
Class: Alpha and beta proteins (a/b) [51349]
Mainly parallel beta sheets (beta-alpha-beta units)
Fold: TIM beta/alpha-barrel [51350]
contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
the first seven superfamilies have similar phosphate-binding sites
Superfamily: Xylose isomerase-like [51658]
different families share similar but non-identical metal-binding sites
uperfamily
Family: Xylose isomerase [51665]

Protein Domains:

D-xylose isomerase [51666]
1. Streptomyces albus [TaxId: 1888] [51667] (1)
  1. 6xia
    1. chain a [29406]
2. Streptomyces murinus [TaxId: 33900] [51668] (1)
  1. 1dxi
    complexed with mg
    1. chain a [29407]
    2. chain b [29408]
3. Streptomyces olivochromogenes [TaxId: 1963] [51669] (9)
  1. 1muw
    atomic resolution structure
    complexed with mg, mn, oh
    1. chain a [79495]
  2. 1s5n
    complexed with mn, na, oh, xyl
    1. chain a [98566]
  3. 1s5m
    complexed with agc, mn, na
    1. chain a [98565]
  4. 1xya
    complexed with mg, oh
    1. chain a [29411]
    2. chain b [29412]
  5. 2gyi
    complexed with hya, mg
    1. chain a [29409]
    2. chain b [29410]
  6. 1xyl
    complexed with mg, oh; mutant
    1. chain a [29413]
    2. chain b [29414]
  7. 1xyb
    complexed with glo, mg
    1. chain a [29417]
    2. chain b [29418]
  8. 1xym
    complexed with glo, mg, oh; mutant
    1. chain a [29415]
    2. chain b [29416]
  9. 1xyc
    complexed with 3mf, mg
    1. chain a [29419]
    2. chain b [29420]
4. Streptomyces rubiginosus [TaxId: 1929] [51670] (24)
  1. 2glk
    automatically matched to d1mnza_
    complexed with gol, mn
    1. region a:2-388 [135344]
  2. 1mnz
    atomic resolution structure
    complexed with ca, mg, mpd, trs
    1. chain a [79328]
  3. 1o1h
    complexed with ca, cl, kr, mg, mpd, trs
    1. chain a [81044]
    2. chain b [81045]
  4. 1oad
    complexed with mo1, mpd, mqd, mrd, mw1, trs
    1. chain a [81253]
    2. chain b [81254]
  5. 4xis
    complexed with mn, xls, xys
    1. chain a [29421]
  6. 1gw9
    complexed with ca, iod, lxc
    1. chain a [70658]
  7. 1xis
    complexed with mn
    1. chain a [29422]
  8. 3xis
    complexed with mg, xls, xys
    1. chain a [29423]
  9. 1xic
    complexed with mn, xls
    1. chain a [29425]
  10. 1xib
    complexed with mn
    1. chain a [29424]
  11. 2xis
    complexed with mg, xyl
    1. chain a [29427]
  12. 1xif
    complexed with glc, mn
    1. chain a [29426]
  13. 1xii
    complexed with mn, xul
    1. chain a [29428]
  14. 1xid
    complexed with asc, mn
    1. chain a [29431]
  15. 1xij
    complexed with mn, the
    1. chain a [29429]
  16. 2g4j
    automatically matched to d1mnza_
    complexed with ca, cl, mg
    1. region a:1-386 [134596]
  17. 2gub
    automatically matched to d1mnza_
    1. region a:3-387 [135729]
  18. 1xig
    complexed with mn, xyl
    1. chain a [29432]
  19. 1xih
    complexed with mn, sor
    1. chain a [29430]
  20. 1xie
    complexed with aso, mn
    1. chain a [29433]
  21. 9xia
    complexed with dfr, mn
    1. chain a [29434]
  22. 8xia
    complexed with mn, xls
    1. chain a [29435]
  23. 3cwh
    automatically matched to d1mnza_
    complexed with mg, oh, xul
    1. region a:2-388 [157051]
  24. 2gve
    automatically matched to d1mnza_
    complexed with co
    1. region a:2-388 [135775]
5. Streptomyces diastaticus, M1033 [TaxId: 1956] [51671] (2)
  1. 1qt1
    complexed with co, ocl
    1. chain a [29436]
    2. chain b [29437]
  2. 1clk
    complexed with co, mg
    1. chain a [29438]
6. Arthrobacter, strain b3728 [TaxId: 1663] [51672] (17)
  1. 4xia
    complexed with mg, sor
    1. chain a [29439]
    2. chain b [29440]
  2. 1xlm
    complexed with al, xyl; mutant
    1. chain a [29441]
    2. chain b [29442]
  3. 1xld
    complexed with mn, xls
    1. chain a [29449]
    2. chain b [29450]
  4. 1xla
    1. chain a [29445]
    2. chain b [29446]
  5. 1xli
    complexed with glt, mn
    1. chain a [29455]
    2. chain b [29456]
  6. 1did
    complexed with dig, mn
    1. chain a [29459]
    2. chain b [29460]
  7. 1xlf
    complexed with gco, mn
    1. chain a [29451]
    2. chain b [29452]
  8. 5xia
    complexed with mg, xyl
    1. chain a [29457]
    2. chain b [29458]
  9. 1die
    complexed with dnj, mg
    1. chain a [29443]
    2. chain b [29444]
  10. 1xlh
    complexed with al
    1. chain a [29453]
    2. chain b [29454]
  11. 1xlc
    complexed with mg, xls
    1. chain a [29447]
    2. chain b [29448]
  12. 1xlj
    complexed with mn, xyl
    1. chain a [29463]
    2. chain b [29464]
  13. 1xlg
    complexed with al, mg, xls
    1. chain a [29461]
    2. chain b [29462]
  14. 1xlb
    complexed with mg
    1. chain a [29465]
    2. chain b [29466]
  15. 1xll
    complexed with zn
    1. chain a [29467]
    2. chain b [29468]
  16. 1xlk
    complexed with mn
    1. chain a [29469]
    2. chain b [29470]
  17. 1xle
    complexed with mn
    1. chain a [29471]
    2. chain b [29472]
7. Actinoplanes missouriensis [TaxId: 1866] [51673] (14)
  1. 1xim
    complexed with co, xyl
    1. chain a [29473]
    2. chain b [29474]
    3. chain c [29475]
    4. chain d [29476]
  2. 3xim
    complexed with co, sor; mutant
    1. chain a [29477]
    2. chain b [29478]
    3. chain c [29479]
    4. chain d [29480]
  3. 4xim
    complexed with co
    1. chain a [29485]
    2. chain b [29486]
    3. chain c [29487]
    4. chain d [29488]
  4. 5xin
    complexed with mg, xls; mutant
    1. chain a [29481]
    2. chain b [29482]
    3. chain c [29483]
    4. chain d [29484]
  5. 3xin
    mutant
    1. chain a [29489]
    2. chain b [29490]
    3. chain c [29491]
    4. chain d [29492]
  6. 1xin
    complexed with mg, xls; mutant
    1. chain a [29513]
    2. chain b [29514]
    3. chain c [29515]
    4. chain d [29516]
  7. 2xim
    complexed with mg, xls; mutant
    1. chain a [29497]
    2. chain b [29498]
    3. chain c [29499]
    4. chain d [29500]
  8. 2xin
    complexed with co, sor; mutant
    1. chain a [29493]
    2. chain b [29494]
    3. chain c [29495]
    4. chain d [29496]
  9. 9xim
    complexed with mn, xls; mutant
    1. chain a [29505]
    2. chain b [29506]
    3. chain c [29507]
    4. chain d [29508]
  10. 7xim
    1. chain a [29501]
    2. chain b [29502]
    3. chain c [29503]
    4. chain d [29504]
  11. 8xim
    complexed with mg, xls; mutant
    1. chain a [29509]
    2. chain b [29510]
    3. chain c [29511]
    4. chain d [29512]
  12. 6xim
    complexed with mg, xls
    1. chain a [29517]
    2. chain b [29518]
    3. chain c [29519]
    4. chain d [29520]
  13. 5xim
    complexed with mg, sor
    1. chain a [29521]
    2. chain b [29522]
    3. chain c [29523]
    4. chain d [29524]
  14. 1bhw
    mutant
    1. chain a [29525]
    2. chain b [29526]
    3. chain c [29527]
    4. chain d [29528]
8. Clostridium thermosulfurogenes, also known as Thermoanaerobacter thermosulfurigenes [TaxId: 33950] [51674] (1)
  1. 1a0c
    complexed with co
    1. chain a [29529]
    2. chain b [29530]
    3. chain c [29531]
    4. chain d [29532]
9. Bacillus stearothermophilus [TaxId: 1422] [51675] (1)
  1. 1a0d
    complexed with mn
    1. chain a [29533]
    2. chain b [29534]
    3. chain c [29535]
    4. chain d [29536]
10. Thermotoga neapolitana [TaxId: 2337] [51676] (1)
  1. 1a0e
    complexed with co
    1. chain a [29537]
    2. chain d [29538]
11. Thermus aquaticus, subsp. Caldophilus [TaxId: 271] [51677] (1)
  1. 1bxc
    1. chain a [29539]
    2. chain b [29540]
    3. chain c [29541]
    4. chain d [29542]
12. Thermus aquaticus, subsp. Thermophilus [TaxId: 271] [51678] (1)
  1. 1bxb
    1. chain a [29543]
    2. chain b [29544]
    3. chain c [29545]
    4. chain d [29546]