Structural Classification of Proteins
Superfamily: Ribulose-phoshate binding barrel
uperfamily
Lineage:
Root:
scop
Class:
Alpha and beta proteins (a/b)
[51349]
Mainly parallel beta sheets (beta-alpha-beta units)
Fold:
TIM beta/alpha-barrel
[51350]
contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
the first seven superfamilies have similar phosphate-binding sites
Superfamily:
Ribulose-phoshate binding barrel
[51366]
uperfamily
Families:
Histidine biosynthesis enzymes
[51367] (6)
structural evidence for the gene duplication within the barrel fold
Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA [51368]
Thermotoga maritima
[TaxId: 2336]
[51369] (1)
1qo2
chain a
[28533]
chain b
[28534]
Streptomyces coelicolor
[TaxId: 1902]
[141744] (2)
SQ
P16250
2-240
1vzw
complexed with gol, so4
region a:2-240
[120553]
2vep
automatically matched to d1vzwa1
complexed with so4
region a:2-240
[153025]
Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF [51370]
Thermotoga maritima
[TaxId: 2336]
[51371] (4)
1thf
complexed with po4
chain d
[28535]
2a0n
automatically matched to d1vh7a_
complexed with iod, po4, unl
region a:2-251
[125961]
1vh7
structural genomics
complexed with po4
chain a
[100646]
1gpw
complexed with po4; mutant
chain a
[65460]
chain c
[65462]
chain e
[65464]
Thermus thermophilus
[TaxId: 274]
[82237] (1)
1ka9
chain f
[77307]
Baker's yeast (Saccharomyces cerevisiae), His7
[TaxId: 4932]
[69379] (4)
1jvn
complexed with 143, ni, pop, so4
region a:230-552
[67355]
region b:230-552
[67357]
1ox6
complexed with ni, pop, so4
region a:230-550
[87505]
region b:230-550
[87507]
1ox5
complexed with 1pr, 5cs, ni; mutant
region a:230-550
[87501]
region b:230-550
[87503]
1ox4
complexed with cyd, ni, pop, so4
region a:230-550
[87497]
region b:230-550
[87499]
Archaeon Pyrobaculum aerophilum
[TaxId: 13773]
[69380] (1)
1h5y
complexed with gol, po4
chain a
[65638]
chain b
[65639]
D-ribulose-5-phosphate 3-epimerase
[51372] (5)
D-ribulose-5-phosphate 3-epimerase [51373]
Potato (Solanum tuberosum)
[TaxId: 4113]
[51374] (1)
1rpx
complexed with so4
chain a
[28536]
chain b
[28537]
chain c
[28538]
Rice (Oryza sativa)
[TaxId: 4530]
[82238] (2)
1h1y
complexed with so4
chain a
[76506]
chain b
[76507]
1h1z
complexed with so4, zn
chain a
[76508]
chain b
[76509]
Synechocystis sp. PCC 6803
[TaxId: 1148]
[110343] (1)
SQ
P74061
1tqj
chain a
[107228]
chain b
[107229]
chain c
[107230]
chain d
[107231]
chain e
[107232]
chain f
[107233]
Plasmodium falciparum
[TaxId: 5833]
[117359] (1)
SQ
Q8I5L3
1tqx
Structural genomics target
complexed with so4, zn
chain a
[112614]
chain b
[112615]
Streptococcus pyogenes
[TaxId: 1314]
[141745] (12)
SQ
Q9A1H8
3-219
2fli
complexed with dx5, zn
region a:3-219
[133714]
2fli
automatically matched to 2FLI A:3-219
complexed with dx5, zn
region b:3-218
[133715]
2fli
automatically matched to 2FLI A:3-219
complexed with dx5, zn
region c:3-219
[133716]
2fli
automatically matched to 2FLI A:3-219
complexed with dx5, zn
region d:3-218
[133717]
2fli
automatically matched to 2FLI A:3-219
complexed with dx5, zn
region e:3-218
[133718]
2fli
automatically matched to 2FLI A:3-219
complexed with dx5, zn
region f:3-218
[133719]
2fli
automatically matched to 2FLI A:3-219
complexed with dx5, zn
region g:3-219
[133720]
2fli
automatically matched to 2FLI A:3-219
complexed with dx5, zn
region h:3-218
[133721]
2fli
automatically matched to 2FLI A:3-219
complexed with dx5, zn
region i:3-219
[133722]
2fli
automatically matched to 2FLI A:3-219
complexed with dx5, zn
region j:3-219
[133723]
2fli
automatically matched to 2FLI A:3-219
complexed with dx5, zn
region k:3-218
[133724]
2fli
automatically matched to 2FLI A:3-219
complexed with dx5, zn
region l:3-219
[133725]
Decarboxylase
[51375] (13)
Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) [51376]
Bacillus subtilis
[TaxId: 1423]
[51377] (1)
1dbt
complex with UMP
complexed with u5p
chain a
[28539]
chain b
[28540]
chain c
[28541]
Escherichia coli
[TaxId: 562]
[51378] (3)
1eix
complexed with bmq
chain a
[28542]
chain b
[28543]
chain c
[28544]
chain d
[28545]
1l2u
chain a
[73516]
chain b
[73517]
1jjk
complexed with bmp
chain a
[63122]
chain b
[63123]
chain c
[63124]
chain d
[63125]
chain e
[63126]
chain f
[63127]
chain g
[63128]
chain h
[63129]
chain i
[63130]
chain j
[63131]
chain k
[63132]
chain l
[63133]
chain m
[63134]
chain n
[63135]
chain o
[63136]
chain p
[63137]
Archaeon Methanobacterium thermoautotrophicum
[TaxId: 145262]
[51379] (20)
1x1z
automatically matched to d1klya_
complexed with bmp, gol; mutant
region a:11-222
[121613]
1x1z
automatically matched to d1klya_
complexed with bmp, gol; mutant
region b:1011-1222
[121614]
1km4
complexed with u; mutant
chain a
[72740]
1km3
complexed with up6; mutant
chain a
[72739]
1km5
complexed with cl, up6; mutant
chain a
[72741]
1kly
complexed with up6; mutant
chain a
[72730]
1dvj
complex with 6-azaUMP
complexed with up6; mutant
chain a
[28546]
chain b
[28547]
chain c
[28548]
chain d
[28549]
1km6
complexed with omp; mutant
chain a
[72742]
1km2
complexed with up6; mutant
chain a
[72738]
1loq
complexed with cso, u
chain a
[74155]
1klz
complexed with cl, u; mutant
chain a
[72731]
2e6y
automatically matched to d1klya_
complexed with gol, u5p; mutant
region a:11-222
[132046]
2e6y
automatically matched to d1klya_
complexed with gol, u5p; mutant
region b:1011-1222
[132047]
1km1
complexed with up6; mutant
chain a
[72736]
chain b
[72737]
1lor
complexed with bmp
chain a
[74156]
1km0
complexed with up6; mutant
chain a
[72732]
chain b
[72733]
chain c
[72734]
chain d
[72735]
1dv7
mutant
chain a
[28550]
1lp6
complexed with c5p
chain a
[74171]
chain b
[74172]
1lol
complexed with bu2, xmp
chain a
[74150]
chain b
[74151]
1los
complexed with up6; mutant
chain a
[74157]
chain b
[74158]
chain c
[74159]
chain d
[74160]
Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]
[51380] (2)
1dqw
mutant
chain a
[28551]
chain b
[28552]
chain c
[28553]
chain d
[28554]
1dqx
complex with 6-hydroxyuridine 5'-phosphate (BMP)
complexed with bmp; mutant
chain a
[28555]
chain b
[28556]
chain c
[28557]
chain d
[28558]
Thermotoga maritima
[TaxId: 2336]
[141746] (1)
SQ
Q9WYG7
1-198
1vqt
complexed with edo
region a:1-198
[120417]
Plasmodium vivax
[TaxId: 5855]
[141747] (1)
2ffc
complexed with u5p
region a:20-351
[133378]
Pyrococcus horikoshii
[TaxId: 53953]
[141748] (8)
SQ
O58462
1-208
2czd
automatically matched to 2CZ5 A:1-208
complexed with dtt, gol
region a:1-206
[131045]
2czd
automatically matched to 2CZ5 A:1-208
complexed with dtt, gol
region b:1-207
[131046]
2cze
automatically matched to 2CZ5 A:1-208
complexed with cit, gol, u5p
region a:1-208
[131047]
2cze
automatically matched to 2CZ5 A:1-208
complexed with cit, gol, u5p
region b:1-208
[131048]
2cz5
complexed with cit, gol
region a:1-208
[131038]
2cz5
automatically matched to 2CZ5 A:1-208
complexed with cit, gol
region b:1-208
[131039]
2czf
automatically matched to 2CZ5 A:1-208
complexed with xmp
region a:1-208
[131049]
2czf
automatically matched to 2CZ5 A:1-208
complexed with xmp
region b:1-208
[131050]
3-keto-L-gulonate 6-phosphate decarboxylase [75050]
Escherichia coli
[TaxId: 562]
[75051] (18)
SQ
P39304
1q6o
complexed with lg6, mg
chain a
[95986]
chain b
[95987]
1xby
complexed with 5rp, mg; mutant
region a:3-215
[121846]
1xby
automatically matched to 1XBY A:3-215
complexed with 5rp, mg; mutant
region b:3-215
[121847]
1xbv
automatically matched to d1kv8b_
complexed with 5rp, mg
region a:3-215
[121842]
1xbv
automatically matched to d1kv8b_
complexed with 5rp, mg
region b:3-215
[121843]
1kv8
complexed with mg, po4
chain a
[73054]
chain b
[73055]
1so4
complexed with mg, tx4; mutant
chain a
[105836]
chain b
[105837]
1xbx
complexed with 5rp, mg; mutant
region a:3-215
[121844]
1xbx
automatically matched to 1XBX A:3-215
complexed with 5rp, mg; mutant
region b:3-215
[121845]
1q6q
complexed with lxp, mg
chain a
[95990]
chain b
[95991]
1so5
complexed with mg, tx4; mutant
chain a
[105838]
chain b
[105839]
1so3
complexed with mg, tx4; mutant
chain a
[105834]
chain b
[105835]
1q6l
complexed with mg, tx4
chain a
[95981]
chain b
[95982]
1q6r
complexed with lx1, mg
chain a
[95992]
chain b
[95993]
1so6
complexed with mg, tx4; mutant
chain a
[105840]
chain b
[105841]
1xbz
automatically matched to 1XBX A:3-215
complexed with lx1, mg; mutant
region a:3-215
[121848]
1xbz
automatically matched to 1XBX A:3-215
complexed with lx1, mg; mutant
region b:3-215
[121849]
1kw1
complexed with lg6, mg
chain a
[73069]
chain b
[73070]
Protozoan orotidine monophosphate decarboxylase [141749]
Plasmodium vivax
[TaxId: 5855]
[141750] (1)
2guu
complexed with up6
region a:21-352
[135747]
Plasmodium falciparum
[TaxId: 5833]
[141751] (2)
SQ
Q8T6J6
1-323
2q8l
automatically matched to 2F84 A:1-323
complexed with po4
region a:1-323
[139891]
2f84
complexed with po4
region a:1-323
[133118]
Plasmodium berghei
[TaxId: 5821]
[141752] (2)
SQ
Q4Z4C3
2-325
2fds
complexed with iod
region a:1-324
[133320]
2fds
automatically matched to 2FDS A:1-324
complexed with iod
region b:1-324
[133321]
Plasmodium yoelii
[TaxId: 5861]
[141753] (1)
SQ
Q7RPE4
2-322
2aqw
complexed with iod, so4
region a:2-322
[127184]
Plasmodium falciparum (isolate 3D7) (Plasmodium falciparum 3D7)
[TaxId: 36329]
[159376] (14)
2q8z
automatically matched to d2f84a1
complexed with 7pe, nup, peg, so4
region a:1-323
[150133]
2q8z
automatically matched to d2f84a1
complexed with 7pe, nup, peg, so4
region b:1-321
[150134]
3bar
automatically matched to d2f84a1
complexed with u5p
region a:1-321
[155036]
3bar
automatically matched to d2f84a1
complexed with u5p
region b:1-321
[155037]
2qaf
automatically matched to d2f84a1
complexed with so4, u5p
region a:1-322
[150211]
2qaf
automatically matched to d2f84a1
complexed with so4, u5p
region b:1-321
[150212]
2zcg
automatically matched to d2f84a1
region a:2-321
[154341]
2zcg
automatically matched to d2f84a1
region b:2-322
[154342]
2za3
automatically matched to d2f84a1
complexed with u5p
region a:1-318
[154268]
2za3
automatically matched to d2f84a1
complexed with u5p
region b:1-318
[154269]
2za2
automatically matched to d2f84a1
region a:1-318
[154266]
2za2
automatically matched to d2f84a1
region b:1-318
[154267]
2za1
automatically matched to d2f84a1
complexed with omp
region a:1-318
[154264]
2za1
automatically matched to d2f84a1
complexed with omp
region b:1-318
[154265]
Tryptophan biosynthesis enzymes
[51381] (12)
N-(5'phosphoribosyl)antranilate isomerase, PRAI [51382]
Escherichia coli
[TaxId: 562]
[51383] (1)
merged in bifunctional enzyme with IPG synthase
1pii
complexed with po4
region a:255-452
[28559]
Thermotoga maritima
[TaxId: 2336]
[51384] (3)
1nsj
complexed with po4
chain a
[28560]
1dl3
chain a
[28561]
chain b
[28562]
1lbm
complexed with 137
chain a
[77876]
Thermus thermophilus
[TaxId: 274]
[102036] (1)
1v5x
chain a
[100377]
chain b
[100378]
Indole-3-glycerophosphate synthase, IPGS [51385]
Escherichia coli
[TaxId: 562]
[51386] (2)
merged in bifunctional enzyme with PRA isomerase
1pii
complexed with po4
region a:1-254
[28563]
1jcm
stability mutant containing an engineered disulfide bridge
chain p
[71633]
Archaeon Sulfolobus solfataricus
[TaxId: 2287]
[51387] (6)
1a53
complexed with igp
chain a
[28564]
1lbf
complexed with 137
chain a
[73808]
1jul
complexed with mes
chain a
[28566]
1igs
complexed with po4
chain a
[28565]
1juk
complexed with so4
chain a
[28567]
1lbl
complexed with 137
chain a
[77875]
Thermotoga maritima
[TaxId: 2336]
[75052] (2)
TM0140
1i4n
complexed with sul
chain a
[71114]
chain b
[71115]
1j5t
structural genomics
complexed with cl
chain a
[71583]
Thermus thermophilus
[TaxId: 274]
[102037] (1)
1vc4
complexed with acy, gol, so4
chain a
[100557]
chain b
[100558]
Trp synthase alpha-subunit [51388]
Salmonella typhimurium
[TaxId: 90371]
[51389] (49)
1qop
complexed with ipl, na, plp
chain a
[28570]
1tjp
automatically matched to d1k3ua_
complexed with hpf, na, plp
region a:1-267
[119290]
1wbj
automatically matched to d1k8xa_
complexed with g3p, na, plp
region a:1-267
[120848]
2clk
automatically matched to d1k8xa_
complexed with g3h, na, plp
region a:1-267
[130578]
1k8y
complexed with g3p, na, plp; mutant
chain a
[72183]
1kfc
complexed with ipl, na, plp; mutant
chain a
[77371]
2cle
automatically matched to d1k3ua_
complexed with f6f, na, plp
region a:2-267
[130572]
2clm
automatically matched to d1k3ua_
complexed with f6f, na, pls
region a:2-267
[130582]
1k3u
complexed with iad, na, plp
chain a
[72030]
2clo
automatically matched to d1k3ua_
complexed with f19, na, pls
region a:2-267
[130584]
2clf
automatically matched to d1k3ua_
complexed with f6f, na, plp
region a:1-268
[146412]
2rh9
automatically matched to d1k3ua_
complexed with igp, na, plp
region a:1-268
[152034]
2cli
automatically matched to d1k3ua_
complexed with f9f, na, plp
region a:1-267
[130576]
1qoq
complexed with igp, plp
chain a
[28571]
2cll
automatically matched to d1k3ua_
complexed with f9f, na, pls
region a:2-267
[130580]
2clh
automatically matched to d1k3ua_
complexed with f19, na, plp
region a:1-267
[130574]
1kfe
complexed with na, pls; mutant
chain a
[77373]
1kfb
complexed with igp, plp; mutant
chain a
[77369]
2j9z
automatically matched to d1k8xa_
complexed with na, plp; mutant
region a:1-267
[147949]
1k7x
complexed with na, plp; mutant
chain a
[72134]
1kfj
complexed with na, pls
chain a
[90958]
1k8x
complexed with na, plp; mutant
chain a
[77288]
2j9y
automatically matched to d1k3ua_
complexed with foo, na; mutant
region a:2-268
[147948]
1k8z
complexed with iag, na, plp; mutant
chain a
[72185]
2tys
complexed with na, plt; mutant
chain a
[28572]
2rhg
automatically matched to d1k3ua_
complexed with igp, na, plp
region a:1-267
[152050]
2j9x
automatically matched to d1k3ua_
complexed with cs, dms, g3p, p1t
region a:2-268
[147946]
1k7f
complexed with iav, plp
chain a
[72099]
3cep
automatically matched to d1k8xa_
complexed with cs, g3h, idm, plp, sri
region a:2-267
[156532]
1beu
complexed with ipl, k, pls; mutant
chain a
[28574]
1ubs
complexed with na, plp; mutant
chain a
[28573]
1a5b
complexed with igp, k, plp; mutant
chain a
[28575]
1a5a
complexed with k, plp; mutant
chain a
[28576]
1kfk
complexed with na, plp
chain a
[90960]
1ttq
complexed with k p, plp
chain a
[28568]
1k7e
complexed with iag, na, plp
chain a
[72097]
1fuy
complexed with fip, na, plp; mutant
chain a
[28579]
1a50
complexed with fip, na, plp
chain a
[28580]
2trs
complexed with ipl, na, pls; mutant
chain a
[28577]
1cw2
chain a
[28578]
1a5s
complexed with fip, na, plp
chain a
[28581]
1c8v
chain a
[28582]
1bks
complexed with na, plp
chain a
[28585]
1ttp
complexed with cs, plp
chain a
[28569]
2tsy
complexed with g3p, na, pls; mutant
chain a
[28583]
1cx9
chain a
[28584]
1c9d
chain a
[28586]
1c29
chain a
[28587]
2wsy
complexed with na, plp
chain a
[28588]
Thermus thermophilus
[TaxId: 274]
[102038] (2)
1ujp
complexed with cit
chain a
[99462]
1wxj
automatically matched to d1ujpa_
complexed with ipl, so4
region a:1-257
[121401]
Archaeon Pyrococcus furiosus
[TaxId: 2261]
[51390] (7)
1geq
CASP4
chain a
[28589]
chain b
[28590]
1wdw
automatically matched to d1geqa_
complexed with plp
region a:1-247
[120916]
1wdw
automatically matched to d1geqa_
complexed with plp
region c:1-247
[120918]
1wdw
automatically matched to d1geqa_
complexed with plp
region e:1-247
[120920]
1wdw
automatically matched to d1geqa_
complexed with plp
region g:1-247
[120922]
1wdw
automatically matched to d1geqa_
complexed with plp
region i:1-247
[120924]
1wdw
automatically matched to d1geqa_
complexed with plp
region k:1-247
[120926]
Escherichia coli
[TaxId: 562]
[117360] (6)
SQ
P00928
1xcf
mutant
chain a
[115118]
chain b
[115119]
1wq5
automatically matched to 1V7Y A:1-268
complexed with gol, so4
region a:1-268
[121163]
1wq5
automatically matched to 1V7Y A:1-268
complexed with gol, so4
region b:1001-1268
[121164]
1v7y
complexed with so4
region a:1-268
[119865]
1v7y
automatically matched to 1V7Y A:1-268
complexed with so4
region b:1001-1268
[119866]
1xc4
complexed with gol, so4
chain a
[115104]
chain b
[115105]
Maize (Zea mays)
[TaxId: 4577]
[117361] (3)
SQ
P42390
1rd5
complexed with mla
chain a
[111772]
chain b
[111773]
1tjr
complexed with so4
region a:86-346
[119292]
1tjr
automatically matched to 1TJR A:86-346
complexed with so4
region b:86-346
[119293]
NanE-like
[117362] (2)
Pfam 04131
Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE [117363]
Staphylococcus aureus
[TaxId: 1280]
[117364] (1)
SQ
P65517
1y0e
Structural genomics target
complexed with po4; mutant
chain a
[116297]
chain b
[116298]
Streptococcus pyogenes
[TaxId: 1314]
[141754] (2)
SQ
P65522
4-233
1yxy
region a:4-233
[124203]
1yxy
automatically matched to 1YXY A:4-233
region b:4-233
[124204]
PdxS-like
[141755] (1)
Pfam 01680
; SOR/SNZ
Pyridoxal biosynthesis lyase PdxS [141756]
PLP synthase
Bacillus stearothermophilus
[TaxId: 1422]
[141757] (6)
SQ
Q5L3Y2
18-271
1znn
complexed with mrd, so4
region a:18-271
[125386]
1znn
automatically matched to 1ZNN A:18-271
complexed with mrd, so4
region b:18-271
[125387]
1znn
automatically matched to 1ZNN A:18-271
complexed with mrd, so4
region c:18-271
[125388]
1znn
automatically matched to 1ZNN A:18-271
complexed with mrd, so4
region d:18-271
[125389]
1znn
automatically matched to 1ZNN A:18-271
complexed with mrd, so4
region e:18-271
[125390]
1znn
automatically matched to 1ZNN A:18-271
complexed with mrd, so4
region f:18-271
[125391]
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Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
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© 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk