Structural Classification of Proteins
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Family: Decarboxylase

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: TIM beta/alpha-barrel [51350]
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. Superfamily: Ribulose-phoshate binding barrel [51366]
    link to SUPERFAMILY database - Superfamily
  5. Family: Decarboxylase [51375]

Protein Domains:

  1. Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) [51376]
    1. Bacillus subtilis [TaxId: 1423] [51377] (1)
      1. 1dbt picpic
        complex with UMP
        complexed with u5p
        1. chain a [28539] picpiclink
        2. chain b [28540] picpiclink
        3. chain c [28541] picpiclink
    2. Escherichia coli [TaxId: 562] [51378] (3)
      1. 1eix picpic
        complexed with bmq
        1. chain a [28542] picpiclink
        2. chain b [28543] picpiclink
        3. chain c [28544] picpiclink
        4. chain d [28545] picpiclink
      2. 1l2u picpic
        1. chain a [73516] picpiclink
        2. chain b [73517] picpiclink
      3. 1jjk picpic
        complexed with bmp
        1. chain a [63122] picpiclink
        2. chain b [63123] picpiclink
        3. chain c [63124] picpiclink
        4. chain d [63125] picpiclink
        5. chain e [63126] picpiclink
        6. chain f [63127] picpiclink
        7. chain g [63128] picpiclink
        8. chain h [63129] picpiclink
        9. chain i [63130] picpiclink
        10. chain j [63131] picpiclink
        11. chain k [63132] picpiclink
        12. chain l [63133] picpiclink
        13. chain m [63134] picpiclink
        14. chain n [63135] picpiclink
        15. chain o [63136] picpiclink
        16. chain p [63137] picpiclink
    3. Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262] [51379] (20)
      1. 1x1z picpic
        automatically matched to d1klya_
        complexed with bmp, gol; mutant
        1. region a:11-222 [121613] picpiclink
      2. 1x1z picpic
        automatically matched to d1klya_
        complexed with bmp, gol; mutant
        1. region b:1011-1222 [121614] picpiclink
      3. 1km4 picpic
        complexed with u; mutant
        1. chain a [72740] picpiclink
      4. 1km3 picpic
        complexed with up6; mutant
        1. chain a [72739] picpiclink
      5. 1km5 picpic
        complexed with cl, up6; mutant
        1. chain a [72741] picpiclink
      6. 1kly picpic
        complexed with up6; mutant
        1. chain a [72730] picpiclink
      7. 1dvj picpic
        complex with 6-azaUMP
        complexed with up6; mutant
        1. chain a [28546] picpiclink
        2. chain b [28547] picpiclink
        3. chain c [28548] picpiclink
        4. chain d [28549] picpiclink
      8. 1km6 picpic
        complexed with omp; mutant
        1. chain a [72742] picpiclink
      9. 1km2 picpic
        complexed with up6; mutant
        1. chain a [72738] picpiclink
      10. 1loq picpic
        complexed with cso, u
        1. chain a [74155] picpiclink
      11. 1klz picpic
        complexed with cl, u; mutant
        1. chain a [72731] picpiclink
      12. 2e6y picpic
        automatically matched to d1klya_
        complexed with gol, u5p; mutant
        1. region a:11-222 [132046] picpiclink
      13. 2e6y picpic
        automatically matched to d1klya_
        complexed with gol, u5p; mutant
        1. region b:1011-1222 [132047] picpiclink
      14. 1km1 picpic
        complexed with up6; mutant
        1. chain a [72736] picpiclink
        2. chain b [72737] picpiclink
      15. 1lor picpic
        complexed with bmp
        1. chain a [74156] picpiclink
      16. 1km0 picpic
        complexed with up6; mutant
        1. chain a [72732] picpiclink
        2. chain b [72733] picpiclink
        3. chain c [72734] picpiclink
        4. chain d [72735] picpiclink
      17. 1dv7 picpic
        mutant
        1. chain a [28550] picpiclink
      18. 1lp6 picpic
        complexed with c5p
        1. chain a [74171] picpiclink
        2. chain b [74172] picpiclink
      19. 1lol picpic
        complexed with bu2, xmp
        1. chain a [74150] picpiclink
        2. chain b [74151] picpiclink
      20. 1los picpic
        complexed with up6; mutant
        1. chain a [74157] picpiclink
        2. chain b [74158] picpiclink
        3. chain c [74159] picpiclink
        4. chain d [74160] picpiclink
    4. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [51380] (2)
      1. 1dqw picpic
        mutant
        1. chain a [28551] picpiclink
        2. chain b [28552] picpiclink
        3. chain c [28553] picpiclink
        4. chain d [28554] picpiclink
      2. 1dqx picpic
        complex with 6-hydroxyuridine 5'-phosphate (BMP)
        complexed with bmp; mutant
        1. chain a [28555] picpiclink
        2. chain b [28556] picpiclink
        3. chain c [28557] picpiclink
        4. chain d [28558] picpiclink
    5. Thermotoga maritima [TaxId: 2336] [141746] (1)
      SQ Q9WYG7 1-198
      1. 1vqt picpic
        complexed with edo
        1. region a:1-198 [120417] picpiclink
    6. Plasmodium vivax [TaxId: 5855] [141747] (1)
      1. 2ffc picpic
        complexed with u5p
        1. region a:20-351 [133378] picpiclink
    7. Pyrococcus horikoshii [TaxId: 53953] [141748] (8)
      SQ O58462 1-208
      1. 2czd picpic
        automatically matched to 2CZ5 A:1-208
        complexed with dtt, gol
        1. region a:1-206 [131045] picpiclink
      2. 2czd picpic
        automatically matched to 2CZ5 A:1-208
        complexed with dtt, gol
        1. region b:1-207 [131046] picpiclink
      3. 2cze picpic
        automatically matched to 2CZ5 A:1-208
        complexed with cit, gol, u5p
        1. region a:1-208 [131047] picpiclink
      4. 2cze picpic
        automatically matched to 2CZ5 A:1-208
        complexed with cit, gol, u5p
        1. region b:1-208 [131048] picpiclink
      5. 2cz5 picpic
        complexed with cit, gol
        1. region a:1-208 [131038] picpiclink
      6. 2cz5 picpic
        automatically matched to 2CZ5 A:1-208
        complexed with cit, gol
        1. region b:1-208 [131039] picpiclink
      7. 2czf picpic
        automatically matched to 2CZ5 A:1-208
        complexed with xmp
        1. region a:1-208 [131049] picpiclink
      8. 2czf picpic
        automatically matched to 2CZ5 A:1-208
        complexed with xmp
        1. region b:1-208 [131050] picpiclink
  2. 3-keto-L-gulonate 6-phosphate decarboxylase [75050]
    1. Escherichia coli [TaxId: 562] [75051] (18)
      SQ P39304
      1. 1q6o picpic
        complexed with lg6, mg
        1. chain a [95986] picpiclink
        2. chain b [95987] picpiclink
      2. 1xby picpic
        complexed with 5rp, mg; mutant
        1. region a:3-215 [121846] picpiclink
      3. 1xby picpic
        automatically matched to 1XBY A:3-215
        complexed with 5rp, mg; mutant
        1. region b:3-215 [121847] picpiclink
      4. 1xbv picpic
        automatically matched to d1kv8b_
        complexed with 5rp, mg
        1. region a:3-215 [121842] picpiclink
      5. 1xbv picpic
        automatically matched to d1kv8b_
        complexed with 5rp, mg
        1. region b:3-215 [121843] picpiclink
      6. 1kv8 picpic
        complexed with mg, po4
        1. chain a [73054] picpiclink
        2. chain b [73055] picpiclink
      7. 1so4 picpic
        complexed with mg, tx4; mutant
        1. chain a [105836] picpiclink
        2. chain b [105837] picpiclink
      8. 1xbx picpic
        complexed with 5rp, mg; mutant
        1. region a:3-215 [121844] picpiclink
      9. 1xbx picpic
        automatically matched to 1XBX A:3-215
        complexed with 5rp, mg; mutant
        1. region b:3-215 [121845] picpiclink
      10. 1q6q picpic
        complexed with lxp, mg
        1. chain a [95990] picpiclink
        2. chain b [95991] picpiclink
      11. 1so5 picpic
        complexed with mg, tx4; mutant
        1. chain a [105838] picpiclink
        2. chain b [105839] picpiclink
      12. 1so3 picpic
        complexed with mg, tx4; mutant
        1. chain a [105834] picpiclink
        2. chain b [105835] picpiclink
      13. 1q6l picpic
        complexed with mg, tx4
        1. chain a [95981] picpiclink
        2. chain b [95982] picpiclink
      14. 1q6r picpic
        complexed with lx1, mg
        1. chain a [95992] picpiclink
        2. chain b [95993] picpiclink
      15. 1so6 picpic
        complexed with mg, tx4; mutant
        1. chain a [105840] picpiclink
        2. chain b [105841] picpiclink
      16. 1xbz picpic
        automatically matched to 1XBX A:3-215
        complexed with lx1, mg; mutant
        1. region a:3-215 [121848] picpiclink
      17. 1xbz picpic
        automatically matched to 1XBX A:3-215
        complexed with lx1, mg; mutant
        1. region b:3-215 [121849] picpiclink
      18. 1kw1 picpic
        complexed with lg6, mg
        1. chain a [73069] picpiclink
        2. chain b [73070] picpiclink
  3. Protozoan orotidine monophosphate decarboxylase [141749]
    1. Plasmodium vivax [TaxId: 5855] [141750] (1)
      1. 2guu picpic
        complexed with up6
        1. region a:21-352 [135747] picpiclink
    2. Plasmodium falciparum [TaxId: 5833] [141751] (2)
      SQ Q8T6J6 1-323
      1. 2q8l picpic
        automatically matched to 2F84 A:1-323
        complexed with po4
        1. region a:1-323 [139891] picpiclink
      2. 2f84 picpic
        complexed with po4
        1. region a:1-323 [133118] picpiclink
    3. Plasmodium berghei [TaxId: 5821] [141752] (2)
      SQ Q4Z4C3 2-325
      1. 2fds picpic
        complexed with iod
        1. region a:1-324 [133320] picpiclink
      2. 2fds picpic
        automatically matched to 2FDS A:1-324
        complexed with iod
        1. region b:1-324 [133321] picpiclink
    4. Plasmodium yoelii [TaxId: 5861] [141753] (1)
      SQ Q7RPE4 2-322
      1. 2aqw picpic
        complexed with iod, so4
        1. region a:2-322 [127184] picpiclink
    5. Plasmodium falciparum (isolate 3D7) (Plasmodium falciparum 3D7) [TaxId: 36329] [159376] (14)
      1. 2q8z picpic
        automatically matched to d2f84a1
        complexed with 7pe, nup, peg, so4
        1. region a:1-323 [150133] picpiclink
      2. 2q8z picpic
        automatically matched to d2f84a1
        complexed with 7pe, nup, peg, so4
        1. region b:1-321 [150134] picpiclink
      3. 3bar picpic
        automatically matched to d2f84a1
        complexed with u5p
        1. region a:1-321 [155036] picpiclink
      4. 3bar picpic
        automatically matched to d2f84a1
        complexed with u5p
        1. region b:1-321 [155037] picpiclink
      5. 2qaf picpic
        automatically matched to d2f84a1
        complexed with so4, u5p
        1. region a:1-322 [150211] picpiclink
      6. 2qaf picpic
        automatically matched to d2f84a1
        complexed with so4, u5p
        1. region b:1-321 [150212] picpiclink
      7. 2zcg picpic
        automatically matched to d2f84a1
        1. region a:2-321 [154341] picpiclink
      8. 2zcg picpic
        automatically matched to d2f84a1
        1. region b:2-322 [154342] picpiclink
      9. 2za3 picpic
        automatically matched to d2f84a1
        complexed with u5p
        1. region a:1-318 [154268] picpiclink
      10. 2za3 picpic
        automatically matched to d2f84a1
        complexed with u5p
        1. region b:1-318 [154269] picpiclink
      11. 2za2 picpic
        automatically matched to d2f84a1
        1. region a:1-318 [154266] picpiclink
      12. 2za2 picpic
        automatically matched to d2f84a1
        1. region b:1-318 [154267] picpiclink
      13. 2za1 picpic
        automatically matched to d2f84a1
        complexed with omp
        1. region a:1-318 [154264] picpiclink
      14. 2za1 picpic
        automatically matched to d2f84a1
        complexed with omp
        1. region b:1-318 [154265] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk