Structural Classification of Proteins
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Superfamily: Cobalamin (vitamin B12)-dependent enzymes

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: TIM beta/alpha-barrel [51350]
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. Superfamily: Cobalamin (vitamin B12)-dependent enzymes [51703]
    link to SUPERFAMILY database - Superfamily

Families:

  1. Methylmalonyl-CoA mutase, N-terminal (CoA-binding) domain [51704] (2)
    the subunits are clearly related but only one (alpha) is active
    1. Methylmalonyl-CoA mutase alpha subunit, domain 1 [88709]
      1. Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744] [88710] (8) picpic
    2. Methylmalonyl-CoA mutase beta subunit, domain 1 [88711]
      the subunits are clearly related but only one (alpha) is active
      1. Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744] [88712] (8) picpic
  2. Glutamate mutase, large subunit [51707] (1)
    1. Glutamate mutase, large subunit [51708]
      1. Clostridium cochlearium [TaxId: 1494] [51709] (3) picpic
  3. Diol dehydratase, alpha subunit [51710] (2)
    1. Diol dehydratase, alpha subunit [51711]
      1. Klebsiella oxytoca [TaxId: 571] [51712] (7) picpic
      2. Klebsiella pneumoniae [TaxId: 573] [82278] (2) picpic
  4. D-lysine 5,6-aminomutase alpha subunit, KamD [117392] (1)
    most similar to the glutamate mutase subunit; contains second cofactor, PLP
    1. D-lysine 5,6-aminomutase alpha subunit, KamD [117393]
      1. Clostridium sticklandii [TaxId: 1511] [117394] (1) picpic
        SQ Q9ZFE6
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk