Structural Classification of Proteins
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Superfamily: L domain-like

less regular structure consisting of variable repeats
link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) [52046]
    2 curved layers, a/b; parallel beta-sheet; order 1234...N; there are sequence similarities between different superfamilies
  4. Superfamily: L domain-like [52058]
    less regular structure consisting of variable repeats
    link to SUPERFAMILY database - Superfamily

Families:

  1. Internalin LRR domain [52059] (3)
    capped at the N-end with a truncated EF-hand subdomain
    1. Internalin A [82324]
      1. Listeria monocytogenes [TaxId: 1639] [82325] (7)
        1. 2omz picpicxrefxref
          automatically matched to d1o6va2
          mutant
          1. region a:33-416 [148889] picpiclink
        2. 1o6v picpicxref
          complexed with ca
          1. region a:33-416 [81100] picpiclink
          2. region b:36-416 [81102] picpiclink
        3. 2omy picpicxrefxref
          automatically matched to d1o6va2
          complexed with ca, cl; mutant
          1. region a:36-416 [139152] picpiclink
        4. 1o6t picpicxref
          complexed with ca, cl, mes, mg, so4
          1. region a:35-416 [81098] picpiclink
        5. 1o6s picpicxrefxref
          complexed with ca, cl
          1. region a:36-416 [81095] picpiclink
        6. 2omw picpicxrefxref
          automatically matched to d1o6va2
          complexed with cl; mutant
          1. region a:36-416 [139150] picpiclink
        7. 2omv picpicxrefxref
          automatically matched to d1o6va2
          complexed with ca, cl; mutant
          1. region a:36-416 [139147] picpiclink
    2. Internalin B [52060]
      1. Listeria monocytogenes [TaxId: 1639] [52061] (9)
        1. 1h6t picpicxref
          1. region a:31-240 [65687] picpiclink
        2. 2omx picpicxrefxref
          automatically matched to d1h6ta2
          complexed with ca, cl; mutant
          1. region a:37-235 [148886] picpiclink
        3. 2omu picpicxrefxref
          automatically matched to d1h6ta2
          complexed with ca, cl; mutant
          1. region a:37-235 [148883] picpiclink
        4. 1d0b picpic
          1. chain a [30866] picpiclink
        5. 1oto picpic
          complexed with ca; mutant
          1. chain a [93525] picpiclink
        6. 1otm picpic
          mutant
          1. chain a [93523] picpiclink
        7. 1otn picpic
          complexed with ca; mutant
          1. chain a [93524] picpiclink
        8. 2omt picpicxrefxref
          automatically matched to d1h6ta2
          complexed with ca, cl; mutant
          1. region a:37-235 [148880] picpiclink
        9. 1m9s picpicxrefxref
          complexed with so4, tb
          1. region a:36-240 [78878] picpiclink
    3. Internalin H [69431]
      1. Listeria monocytogenes [TaxId: 1639] [69432] (1)
        1. 1h6u picpicxref
          1. region a:36-262 [65689] picpiclink
  2. Leucine rich effector protein YopM [69433] (1)
    1. Leucine rich effector protein YopM [69434]
      1. Yersinia pestis [TaxId: 632] [69435] (2)
        1. 1jl5 picpic
          complexed with ca
          1. chain a [66830] picpiclink
        2. 1g9u picpic
          complexed with act, ca, hg
          1. chain a [65172] picpiclink
  3. Ngr ectodomain-like [75142] (6)
    1. von Willebrand factor binding domain of glycoprotein Ib alpha [75143]
      1. Human (Homo sapiens) [TaxId: 9606] [75144] (9)
        1. 1p9a picpic
          complexed with man, nag; mutant
          1. chain g [87990] picpiclink
        2. 1m0z picpic
          mutant
          1. chain a [74359] picpiclink
          2. chain b [74360] picpiclink
        3. 1ook picpicxref
          complexed with cl, man, nag, tys; mutant
          1. chain g [87200] picpiclink
        4. 1sq0 picpicxref
          mutant
          1. chain b [98960] picpiclink
        5. 1p8v picpicxref
          complexed with dfp, mes, nag, tys; mutant
          1. chain a [87985] picpiclink
        6. 1qyy picpic
          complexed with man, nag, pt; mutant
          1. chain a [96605] picpiclink
          2. chain g [96606] picpiclink
        7. 1u0n picpicxrefxrefxref
          automatically matched to d1m0za_
          mutant
          1. region d:1-265 [119408] picpiclink
        8. 1m10 picpicxref
          mutant
          1. chain b [74362] picpiclink
        9. 1gwb picpic
          complexed with acy, nag, ndg, pt, so4, sty
          1. chain a [76362] picpiclink
          2. chain b [76363] picpiclink
    2. Reticulon 4 receptor (Nogo-66 receptor, Ngr) [89567]
      1. Human (Homo sapiens) [TaxId: 9606] [89568] (2)
        1. 1ozn picpic
          complexed with acy, man, nag
          1. chain a [87621] picpiclink
        2. 1p8t picpic
          complexed with nag
          1. chain a [87982] picpiclink
    3. Slit [117461]
      1. Fruit fly (Drosophila melanogaster) [TaxId: 7227] [117462] (1)
        SQ P24014 542-733
        1. 1w8a picpic
          3rd LRR domain
          1. chain a [114363] picpiclink
    4. Decorin [117463]
      1. Cow (Bos taurus) [TaxId: 9913] [117464] (3)
        SQ P21793 52-356
        1. 1xku picpic
          complexed with nag, tmn
          1. chain a [115425] picpiclink
        2. 1xcd picpic
          complexed with nag, tmn
          1. chain a [115117] picpiclink
        3. 1xec picpic
          complexed with nag
          1. chain a [115227] picpiclink
          2. chain b [115228] picpiclink
    5. High affinity nerve growth factor receptor, N-terminal domain [141992]
      1. Human (Homo sapiens) [TaxId: 9606] [141993] (2)
        SQ P04629 36-191
        1. 2ifg picpicxrefxrefxrefxrefxrefxref
          complexed with bma, man, nag, ndg
          1. region a:36-191 [137337] picpiclink
        2. 2ifg picpicxrefxrefxrefxrefxrefxref
          automatically matched to 2IFG A:36-191
          complexed with bma, man, nag, ndg
          1. region b:36-191 [137340] picpiclink
    6. Follicle-stimulating hormone receptor [159450]
      1. Human (Homo sapiens) [TaxId: 9606] [159451] (1)
        SQ P23945 18-259
        1. 1xwd picpicxrefxrefxrefxref
          complexed with bma, nag, so4
          1. region c:18-259 [144581] picpiclink
  4. Polygalacturonase inhibiting protein PGIP [89569] (1)
    1. Polygalacturonase inhibiting protein PGIP [89570]
      1. Kidney bean (Phaseolus vulgaris) [TaxId: 3885] [89571] (1)
        1. 1ogq picpic
          complexed with act, nag
          1. chain a [86996] picpiclink
  5. Rab geranylgeranyltransferase alpha-subunit, C-terminal domain [52062] (1)
    1. Rab geranylgeranyltransferase alpha-subunit, C-terminal domain [52063]
      1. Rat (Rattus norvegicus) [TaxId: 10116] [52064] (2)
        1. 1dce picpicxrefxrefxref
          complexed with zn
          1. region a:444-567 [30867] picpiclink
          2. region c:444-567 [30868] picpiclink
        2. 1ltx picpicxrefxrefxrefxrefxref
          complexed with cl, far, zn2; mutant
          1. region a:444-567 [84713] picpiclink
  6. mRNA export factor tap [52065] (1)
    1. mRNA export factor tap [52066]
      1. Human (Homo sapiens) [TaxId: 9606] [52067] (8)
        1. 1koh picpicxref
          mutant
          1. chain b [68721] picpiclink
          2. chain d [68724] picpiclink
        2. 1koh picpicxref
          mutant
          1. region a:201-362 [68719] picpiclink
          2. region c:201-362 [68722] picpiclink
        3. 1koo picpicxref
          mutant
          1. chain b [68728] picpiclink
          2. chain d [68731] picpiclink
        4. 1koo picpicxref
          mutant
          1. region a:201-362 [68726] picpiclink
          2. region c:201-362 [68729] picpiclink
        5. 1fo1 picpicxref
          chain A contains disordered non-canonical RBD domain in the N-terminal part
          1. region a:203-362 [30869] picpiclink
        6. 1fo1 picpicxref
          1. chain b [30870] picpiclink
        7. 1ft8 picpicxrefxref
          mutant
          1. chain b [30872] picpiclink
          2. chain d [30874] picpiclink
        8. 1ft8 picpicxrefxref
          mutant
          1. region a:203-362 [30871] picpiclink
          2. region c:201-362 [30873] picpiclink
  7. U2A'-like [52068] (1)
    duplication: consists of 5-6 partly irregular repeats
    1. Splicesomal U2A' protein [52069]
      1. Human (Homo sapiens) [TaxId: 9606] [52070] (1)
        1. 1a9n picpicxref
          protein/RNA complex; mutant
          1. chain a [30875] picpiclink
          2. chain c [30876] picpiclink
  8. L domain [52071] (6)
    1. Type 1 insulin-like growth factor receptor extracellular domain [52072]
      1. Human (Homo sapiens) [TaxId: 9606] [52073] (1)
        L1 and L2 domains
        1. 1igr picpicxref
          complexed with fuc, man, nag, so4
          1. region a:1-149 [30877] picpiclink
          2. region a:300-478 [30878] picpiclink
    2. Receptor protein-tyrosine kinase Erbb-3 extracellular domain [75145]
      1. Human (Homo sapiens) [TaxId: 9606] [75146] (1)
        1. 1m6b picpicxref
          L1 and L2 domains
          complexed with nag, so4
          1. region a:8-165 [74521] picpiclink
          2. region a:311-479 [74522] picpiclink
          3. region b:6-165 [74525] picpiclink
          4. region b:311-479 [74526] picpiclink
    3. EGF receptor extracellular domain [82326]
      1. Human (Homo sapiens) [TaxId: 9606] [82327] (15)
        1. 3b2u picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1ivoa2
          complexed with bma, man, nag, so4
          1. region a:312-480 [154770] picpiclink
        2. 3b2u picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1ivoa2
          complexed with bma, man, nag, so4
          1. region b:312-480 [154772] picpiclink
        3. 3b2u picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1ivoa2
          complexed with bma, man, nag, so4
          1. region e:312-480 [154776] picpiclink
        4. 3b2u picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1ivoa2
          complexed with bma, man, nag, so4
          1. region i:312-480 [154782] picpiclink
        5. 3b2u picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1ivoa2
          complexed with bma, man, nag, so4
          1. region m:312-480 [154786] picpiclink
        6. 3b2u picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1ivoa2
          complexed with bma, man, nag, so4
          1. region p:312-480 [154790] picpiclink
        7. 3b2u picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1ivoa2
          complexed with bma, man, nag, so4
          1. region s:312-480 [154794] picpiclink
        8. 3b2u picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1ivoa2
          complexed with bma, man, nag, so4
          1. region v:312-480 [154798] picpiclink
        9. 1mox picpicxrefxref
          complexed with TGF-alpha
          complexed with cd, cl, fuc, man, nag, pt
          1. region a:1-162 [91372] picpiclink
          2. region a:312-480 [91373] picpiclink
          3. region b:1-162 [91376] picpiclink
          4. region b:312-480 [91377] picpiclink
        10. 1yy9 picpicxrefxref
          automatically matched to d1moxa1
          complexed with bma, man, nag, ndg
          1. region a:2-162 [124207] picpiclink
        11. 1yy9 picpicxrefxref
          automatically matched to d1ivoa2
          complexed with bma, man, nag, ndg
          1. region a:312-480 [124208] picpiclink
        12. 1nql picpicxrefxref
          complexed with EGF
          complexed with aso, nag
          1. region a:3-162 [86033] picpiclink
          2. region a:312-480 [86034] picpiclink
        13. 3c09 picpicxrefxrefxrefxrefxrefxref
          automatically matched to d1ivoa2
          complexed with bma, man, nag
          1. region a:312-480 [155811] picpiclink
        14. 3c09 picpicxrefxrefxrefxrefxrefxref
          automatically matched to d1ivoa2
          complexed with bma, man, nag
          1. region d:312-480 [155815] picpiclink
        15. 1ivo picpicxrefxref
          L1 and L2 domains; complexed with EGF
          complexed with nag
          1. region a:2-162 [76845] picpiclink
          2. region a:312-480 [76846] picpiclink
          3. region b:3-162 [76849] picpiclink
          4. region b:312-480 [76850] picpiclink
    4. Protooncoprotein Her2 extracellular domain [82328]
      1. Human (Homo sapiens) [TaxId: 9606] [82329] (2)
        1. 1n8z picpicxrefxrefxrefxrefxref
          complexed with nag, so4
          1. region c:1-165 [80322] picpiclink
          2. region c:323-488 [80323] picpiclink
        2. 1s78 picpicxrefxrefxrefxrefxref
          complexed with man, nag
          1. region a:1-165 [98616] picpiclink
          2. region a:323-488 [98617] picpiclink
          3. region b:1-165 [98620] picpiclink
          4. region b:323-488 [98621] picpiclink
      2. Rat (Rattus norvegicus) [TaxId: 10116] [82330] (1)
        1. 1n8y picpicxref
          complexed with nag
          1. region c:1-165 [80314] picpiclink
          2. region c:323-488 [80315] picpiclink
    5. Insulin receptor [159452]
      1. Human (Homo sapiens) [TaxId: 9606] [159453] (2)
        SQ P06213 31-183! SQ P06213 339-494
        1. 2dtg picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          mutant
          1. region e:4-156 [145103] picpiclink
        2. 2dtg picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          mutant
          1. region e:312-467 [145104] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk