Structural Classification of Proteins
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Protein: Immunoglobulin light chain kappa variable domain, VL-kappa from Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Immunoglobulin-like beta-sandwich [48725]
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. Superfamily: Immunoglobulin [48726]
    link to SUPERFAMILY database - Superfamily
  5. Family: V set domains (antibody variable domain-like) [48727]
  6. Protein: Immunoglobulin light chain kappa variable domain, VL-kappa [88519]
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. Species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090] [88525]

PDB Entry Domains:

  1. 1q9r picpicxrefxrefxref
    part of Fab s25-2
    complexed with kda, kdo, mg, zn
    1. region a:1-107 [96305] picpiclink
  2. 1q9q picpicxrefxrefxref
    part of Fab s25-2
    complexed with kda, kdo, mg, zn
    1. region a:1-107 [96301] picpiclink
  3. 1nlb picpicxrefxrefxref
    part of anti-HCV Fab 19D9D6
    1. region l:1-107 [80623] picpiclink
  4. 1q9v picpicxrefxrefxref
    part of Fab s25-2
    complexed with kdo, mg, zn
    1. region a:1-107 [96316] picpiclink
  5. 1mvu picpicxref
    part of P-glycoprotein-specific scFv C219; complexed with synthetic epitope peptide, chain P
    complexed with so4; mutant
    1. chain a [91474] picpiclink
  6. 1q9t picpicxrefxrefxref
    part of Fab s25-2
    complexed with kda, kdo, mg, zn
    1. region a:1-107 [96310] picpiclink
  7. 2imm picpic
    VL domain only of MCPC603
    complexed with ace, so4
    1. chain a [19857] picpiclink
  8. 1q9w picpicxrefxrefxref
    part of Fab s45-18
    complexed with gp1, gp4, kdo, mg
    1. region a:1-107 [96320] picpiclink
    2. region c:1-107 [96324] picpiclink
  9. 1q9o picpicxrefxrefxref
    part of Fab s45-18
    complexed with mg
    1. region a:1-107 [96292] picpiclink
    2. region c:1-107 [96296] picpiclink
  10. 1a3r picpicxrefxrefxref
    part of Fab 8F5
    complexed with nh2
    1. region l:1-114 [19780] picpiclink
  11. 1mhh picpicxrefxrefxrefxref
    part of anti-HCV Fab 19D9D6
    complexed with aea, edo; mutant
    1. region a:1-107 [79119] picpiclink
    2. region c:1-107 [79123] picpiclink
  12. 1sbs picpicxrefxrefxref
    part of anti-HCG Fab 3A2
    complexed with so4
    1. region l:1-113 [20366] picpiclink
  13. 1hil picpicxrefxrefxref
    part of Fab 17/9
    1. region a:1-108 [19786] picpiclink
    2. region c:1-108 [19788] picpiclink
  14. 1q9k picpicxrefxrefxref
    part of Fab s25-2
    complexed with mg
    1. region a:1-107 [96276] picpiclink
  15. 1il1 picpicxrefxrefxref
    part of anti-HIV Fab G3-519
    1. region b:1-112 [62541] picpiclink
  16. 43c9 picpicxref
    part of sterolytic and amidolytic Fv 43c9
    1. chain a [20386] picpiclink
    2. chain c [20388] picpiclink
    3. chain e [20390] picpiclink
    4. chain g [20392] picpiclink
  17. 2ck0 picpicxrefxrefxref
    part of anti-anti-idiotypic Fab against human angiotensin II, complex with a synthetic cyclic peptide
    1. region l:1-117 [100855] picpiclink
  18. 43ca picpicxref
    part of sterolytic and amidolytic Fv 43c9
    complexed with npo
    1. chain a [20394] picpiclink
    2. chain c [20396] picpiclink
    3. chain e [20398] picpiclink
    4. chain g [20400] picpiclink
  19. 1n64 picpicxrefxrefxref
    part of anti-HCV Fab 19D9D6; complex with peptide, chain P (related to 1cwx)
    1. region l:1-107 [80116] picpiclink
  20. 1q9l picpicxrefxrefxref
    part of Fab s25-2
    complexed with mg, zn
    1. region a:1-107 [96280] picpiclink
    2. region c:1-107 [96284] picpiclink
  21. 1ck0 picpicxrefxrefxref
    part of anti-anti-idiotypic Fab against human angiotensin II, unliganded form
    1. region l:1-117 [90424] picpiclink
  22. 2ap2 picpicxref
    part of P-glycoprotein-specific scFv C219
    1. chain a [20178] picpiclink
    2. chain c [20180] picpiclink
  23. 1frg picpicxrefxrefxref
    part of Fab 26/9
    complexed with nh2
    1. region l:1-113 [19924] picpiclink
  24. 1ifh picpicxrefxrefxref
    part of Fab 17/9
    1. region l:1-108 [19790] picpiclink
  25. 1ap2 picpicxref
    part of P-glycoprotein-specific scFv C219
    1. chain a [20182] picpiclink
    2. chain c [20184] picpiclink
  26. 3ck0 picpicxrefxrefxref
    part of anti-anti-idiotypic Fab against human angiotensin II, complex with angiotensin II
    1. region l:1-117 [100867] picpiclink
  27. 1h3p picpicxrefxrefxref
    part of anti-hepatitis B Fab (against PRES1 region)
    1. region l:1-107 [76650] picpiclink
  28. 1him picpicxrefxrefxref
    part of Fab 17/9; chain identifiers are mixed up
    complexed with nh2
    1. region h:1-108 [19793] picpiclink
    2. region j:1-108 [19795] picpiclink
  29. 1bbd picpicxrefxrefxref
    part of Fab 8F5
    complexed with so4
    1. region l:1-114 [19782] picpiclink
  30. 1a5f picpicxrefxrefxref
    part of an anti-E-selectin Fab
    1. region l:1-113 [20302] picpiclink
  31. 1mcp picpicxrefxrefxref
    part of Fab MCPC603
    complexed with so4
    1. region l:1-114 [19858] picpiclink
  32. 1pkq picpicxrefxrefxrefxref
    part of humanized Fab 8-18c5
    1. region a:1-107 [88148] picpiclink
    2. region f:1-107 [88153] picpiclink
  33. 2mcp picpicxrefxrefxref
    part of Fab MCPC603
    complexed with pc
    1. region l:1-114 [19860] picpiclink
  34. 1hin picpicxrefxrefxref
    part of Fab 17/9
    1. region l:1-108 [19796] picpiclink
  35. 2dtg picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
    mutant
    1. region b:1-112 [145095] picpiclink
  36. 1t4k picpicxrefxrefxref
    MQ P01632 P01837 # natural chimera; catalytic antibody with aldolase activity
    complexed with zn
    1. region a:1-107 [112235] picpiclink
    2. region c:1-107 [112239] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk