Superfamily: Cytidine deaminase-like

contains extra C-terminal strand 5, order 21345
uperfamily

Lineage:

1. Root: scop
2. Class: Alpha and beta proteins (a/b) [51349]
   Mainly parallel beta sheets (beta-alpha-beta units)
3. Fold: Cytidine deaminase-like [53926]
   core: alpha-beta(2)-(alpha-beta)2; 3 layers (a/b/a); mixed beta-sheet of 4 strands, order 2134; strand 1 is antiparallel to the rest
4. Superfamily: Cytidine deaminase-like [53927]
   contains extra C-terminal strand 5, order 21345
   uperfamily

Families:

1. Cytidine deaminase [53928] (7)
   strand 5 is antiparallel to strand 4
   1. mono-domain cytidine deaminase [75327]
      1. Bacillus subtilis [TaxId: 1423] [75328] (4)
         SQ P19079
      2. Human (Homo sapiens) [TaxId: 9606] [102711] (1)
      3. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [110764] (1)
         SQ Q06549
      4. Bacillus anthracis [TaxId: 1392] [142829] (2)
         SQ Q81LT6 1-124
      5. Mouse (Mus musculus) [TaxId: 10090] [142830] (12)
         SQ P56389 10-146
   2. Two-domain cytidine deaminase [53929]
      duplication: consists of two similar domains; contains extra helices in the N-terminal domain
      1. Escherichia coli [TaxId: 562] [53930] (4)
   3. Blasticidin-S deaminase [142831]
      1. Aspergillus terreus [TaxId: 33178] [142832] (14)
         SQ P78986 2-126
2. Deoxycytidylate deaminase-like [89800] (10)
   strand 5 is parallel to strand 4
   1. Cytosine deaminase [89801]
      1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [89802] (8)
   2. Guanine deaminase GuaD [110765]
      1. Bacillus subtilis [TaxId: 1423] [110766] (2)
         SQ O34598
   3. Deoxycytidylate deaminase [117756]
      1. Bacteriophage T4 [TaxId: 10665] [117757] (1)
         SQ P16006
   4. Putative deaminase NE0047 [142833]
      1. Nitrosomonas europaea [TaxId: 915] [142834] (1)
         SQ Q82Y41 1-189
   5. Cytidine and deoxycytidylate deaminase CodA [142835]
      1. Agrobacterium tumefaciens [TaxId: 358] [142836] (2)
         SQ Q8UHJ4 2-131
   6. Riboflavin biosynthesis protein RibD [142837]
      1. Bacillus subtilis [TaxId: 1423] [142838] (8)
         SQ P17618 1-145
      2. Thermotoga maritima [TaxId: 2336] [142839] (1)
         SQ Q9X2E8 1-147
   7. tRNA adenosine deaminase TadA [142840]
      1. Staphylococcus aureus [TaxId: 1280] [142841] (4)
         SQ Q99W51 1-151
      2. Escherichia coli [TaxId: 562] [142842] (2)
         SQ P68398 13-168
      3. Aquifex aeolicus [TaxId: 63363] [142843] (4)
         SQ O67050 1-151
3. Hypothetical protein TM1506 [110651] (1)
   strand 5 is parallel to strand 4
   1. Hypothetical protein TM1506 [110652]
      1. Thermotoga maritima [TaxId: 2336] [110653] (1)
         SQ Q9X1J4
4. AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC [64198] (3)
   duplication: consists of two domains of this fold with extra secondary structures within and in between the two core motifs
   1. AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC [64199]
      1. Chicken (Gallus gallus) [TaxId: 9031] [64200] (4)
         SQ P31335
      2. Human (Homo sapiens) [TaxId: 9606] [102716] (3)
      3. Thermotoga maritima [TaxId: 2336] [142844] (2)
         SQ Q9X0X6 158-452
5. FdhD/NarQ [159821] (1)
   Pfam 02634; contains extra N-terminal beta-hairpin arm, involved in dimerization, and an alpha+beta subdomain of beta-grasp fold (scop_cf 54235)
   1. Uncharacterized protein DP1777 [159822]
      Related to formate dehydrogenase accessory protein FdhD
      1. Desulfotalea psychrophila [TaxId: 84980] [159823] (4)
         SQ Q6AMB9 7-257

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk