Family: Deoxycytidylate deaminase-like

strand 5 is parallel to strand 4

Lineage:

1. Root: scop
2. Class: Alpha and beta proteins (a/b) [51349]
   Mainly parallel beta sheets (beta-alpha-beta units)
3. Fold: Cytidine deaminase-like [53926]
   core: alpha-beta(2)-(alpha-beta)2; 3 layers (a/b/a); mixed beta-sheet of 4 strands, order 2134; strand 1 is antiparallel to the rest
4. Superfamily: Cytidine deaminase-like [53927]
   contains extra C-terminal strand 5, order 21345
   uperfamily
5. Family: Deoxycytidylate deaminase-like [89800]
   strand 5 is parallel to strand 4

Protein Domains:

1. Cytosine deaminase [89801]
   1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [89802] (8)
      1. 1p6o
         complexed with acy, ca, hpy, zn
         1. chain a [94185]
         2. chain b [94186]
      2. 1ox7
         complexed with ca, zn
         1. chain a [93669]
         2. chain b [93670]
      3. 1uaq
         complexed with duc, zn
         1. chain a [88386]
         2. chain b [88387]
      4. 1ysb
         complexed with ca, zn; mutant
         1. region a:3-158 [123966]
      5. 1ysb
         automatically matched to 1YSB A:3-158
         complexed with ca, zn; mutant
         1. region b:203-358 [123967]
      6. 1ysd
         complexed with ca, zn; mutant
         1. region a:3-158 [123968]
      7. 1ysd
         automatically matched to 1YSD A:3-158
         complexed with ca, zn; mutant
         1. region b:203-358 [123969]
      8. 1rb7
         complexed with zn
         1. chain a [97277]
         2. chain b [97278]
2. Guanine deaminase GuaD [110765]
   1. Bacillus subtilis [TaxId: 1423] [110766] (2)
      SQ O34598
      1. 1wkq
         complexed with imd, zn
         1. chain a [109393]
         2. chain b [109394]
      2. 1tiy
         Structural genomics target
         complexed with zn
         1. chain a [107012]
         2. chain b [107013]
3. Deoxycytidylate deaminase [117756]
   1. Bacteriophage T4 [TaxId: 10665] [117757] (1)
      SQ P16006
      1. 1vq2
         complexed with ddn, zn; mutant
         1. chain a [114004]
4. Putative deaminase NE0047 [142833]
   1. Nitrosomonas europaea [TaxId: 915] [142834] (1)
      SQ Q82Y41 1-189
      1. 2g84
         complexed with bme, edo, na, zn
         1. region a:1-189 [134766]
5. Cytidine and deoxycytidylate deaminase CodA [142835]
   1. Agrobacterium tumefaciens [TaxId: 358] [142836] (2)
      SQ Q8UHJ4 2-131
      1. 2a8n
         complexed with zn
         1. region a:2-131 [126408]
      2. 2a8n
         automatically matched to 2A8N A:2-131
         complexed with zn
         1. region b:4-131 [126409]
6. Riboflavin biosynthesis protein RibD [142837]
   1. Bacillus subtilis [TaxId: 1423] [142838] (8)
      SQ P17618 1-145
      1. 2b3z
         complexed with zn
         1. region a:1-145 [127808]
      2. 2b3z
         automatically matched to 2B3Z A:1-145
         complexed with zn
         1. region b:1-145 [127810]
      3. 2b3z
         automatically matched to 2B3Z A:1-145
         complexed with zn
         1. region c:1-145 [127812]
      4. 2b3z
         automatically matched to 2B3Z A:1-145
         complexed with zn
         1. region d:1-145 [127814]
      5. 2d5n
         automatically matched to 2B3Z A:1-145
         complexed with ndp, zn
         1. region a:1-145 [131274]
      6. 2d5n
         automatically matched to 2B3Z A:1-145
         complexed with ndp, zn
         1. region b:1-145 [131276]
      7. 2d5n
         automatically matched to 2B3Z A:1-145
         complexed with ndp, zn
         1. region c:1-145 [131278]
      8. 2d5n
         automatically matched to 2B3Z A:1-145
         complexed with ndp, zn
         1. region d:1-145 [131280]
   2. Thermotoga maritima [TaxId: 2336] [142839] (1)
      SQ Q9X2E8 1-147
      1. 2hxv
         complexed with cl, gol, ndp, zn
         1. region a:1-147 [136860]
7. tRNA adenosine deaminase TadA [142840]
   1. Staphylococcus aureus [TaxId: 1280] [142841] (4)
      SQ Q99W51 1-151
      1. 2b3j
         complexed with gol, pr5, zn
         1. region a:1-151 [127787]
      2. 2b3j
         automatically matched to 2B3J A:1-151
         complexed with gol, pr5, zn
         1. region b:1-151 [127788]
      3. 2b3j
         automatically matched to 2B3J A:1-151
         complexed with gol, pr5, zn
         1. region c:1-151 [127789]
      4. 2b3j
         automatically matched to 2B3J A:1-151
         complexed with gol, pr5, zn
         1. region d:3-151 [127790]
   2. Escherichia coli [TaxId: 562] [142842] (2)
      SQ P68398 13-168
      1. 1z3a
         complexed with zn
         1. region a:13-168 [124396]
      2. 1z3a
         automatically matched to 1Z3A A:13-168
         complexed with zn
         1. region b:13-168 [124397]
   3. Aquifex aeolicus [TaxId: 63363] [142843] (4)
      SQ O67050 1-151
      1. 1wwr
         complexed with zn
         1. region a:1-151 [121366]
      2. 1wwr
         automatically matched to 1WWR A:1-151
         complexed with zn
         1. region b:1-149 [121367]
      3. 1wwr
         automatically matched to 1WWR A:1-151
         complexed with zn
         1. region c:1-151 [121368]
      4. 1wwr
         automatically matched to 1WWR A:1-151
         complexed with zn
         1. region d:1-151 [121369]

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk