Structural Classification of Proteins
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Family: Formate/glycerate dehydrogenases, NAD-domain

this domain interrupts the other domain which defines family

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: NAD(P)-binding Rossmann-fold domains [51734]
    core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
    The nucleotide-binding modes of this and the next two folds/superfamilies are similar
  4. Superfamily: NAD(P)-binding Rossmann-fold domains [51735]
    link to SUPERFAMILY database - Superfamily
  5. Family: Formate/glycerate dehydrogenases, NAD-domain [51830]
    this domain interrupts the other domain which defines family

Protein Domains:

  1. Formate dehydrogenase [51831]
    1. Pseudomonas sp., strain 101 [TaxId: 306] [51832] (2)
      1. 2nac picpicxref
        complexed with so4
        1. region a:148-335 [30088] picpiclink
        2. region b:148-335 [30089] picpiclink
      2. 2nad picpicxref
        complexed with azi, nad, so4
        1. region a:148-335 [30090] picpiclink
        2. region b:148-335 [30091] picpiclink
  2. Putative formate dehydrogenase [51833]
    1. Archaeon Pyrobaculum aerophilum [TaxId: 13773] [51834] (1)
      1. 1qp8 picpicxref
        complexed with ndp
        1. region a:83-263 [30092] picpiclink
        2. region b:83-263 [30093] picpiclink
  3. Transcription corepressor CtbP [82298]
    C-terminal binding protein 1; a dehydrogenase
    1. Human (Homo sapiens), Ctbp1 [TaxId: 9606] [82299] (1)
      1. 1mx3 picpicxref
        complexed with acy, nad
        1. region a:126-318 [79638] picpiclink
    2. Rat (Rattus norvegicus), Ctbp3 [TaxId: 10116] [89529] (2)
      1. 1hku picpicxref
        complexed with cea, fmt, gol, nad
        1. region a:115-307 [83557] picpiclink
      2. 1hl3 picpicxref
        complexed with nad
        1. region a:115-307 [83585] picpiclink
  4. D-2-hydroxyisocaproate dehydrogenase [51835]
    1. Lactobacillus casei [TaxId: 1582] [51836] (1)
      1. 1dxy picpicxref
        complexed with coi, nad, so4
        1. region a:101-299 [30094] picpiclink
  5. D-glycerate dehydrogenase [51837]
    1. Hyphomicrobium methylovorum [TaxId: 84] [51838] (1)
      1. 1gdh picpicxref
        complexed with so4
        1. region a:101-291 [30095] picpiclink
        2. region b:101-291 [30096] picpiclink
  6. Phosphoglycerate dehydrogenase [51839]
    has additional C-terminal domain of the ferredoxin fold
    1. Escherichia coli [TaxId: 562] [51840] (18)
      1. 1sc6 picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1psda1
        complexed with nad; mutant
        1. region a:108-295 [118932] picpiclink
      2. 1sc6 picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1psda1
        complexed with nad; mutant
        1. region b:108-295 [118935] picpiclink
      3. 1sc6 picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1psda1
        complexed with nad; mutant
        1. region c:108-291 [118938] picpiclink
      4. 1sc6 picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1psda1
        complexed with nad; mutant
        1. region d:108-291 [118941] picpiclink
      5. 1yba picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1psda1
        complexed with akg, nad, po4
        1. region a:108-295 [122872] picpiclink
      6. 1yba picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1psda1
        complexed with akg, nad, po4
        1. region b:108-295 [122875] picpiclink
      7. 1yba picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1psda1
        complexed with akg, nad, po4
        1. region c:108-295 [122878] picpiclink
      8. 1yba picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1psda1
        complexed with akg, nad, po4
        1. region d:108-295 [122881] picpiclink
      9. 2p9c picpicxrefxrefxrefxref
        automatically matched to d1psda1
        complexed with nai, ser; mutant
        1. region a:108-295 [139556] picpiclink
      10. 2p9c picpicxrefxrefxrefxref
        automatically matched to d1psda1
        complexed with nai, ser; mutant
        1. region b:108-295 [139559] picpiclink
      11. 1psd picpicxrefxref
        complexed with nad
        1. region a:108-295 [30097] picpiclink
        2. region b:108-295 [30098] picpiclink
      12. 2p9e picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1psda1
        complexed with cit, nai, po4, so4; mutant
        1. region a:108-295 [139562] picpiclink
      13. 2p9e picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1psda1
        complexed with cit, nai, po4, so4; mutant
        1. region b:108-295 [139565] picpiclink
      14. 2p9e picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1psda1
        complexed with cit, nai, po4, so4; mutant
        1. region c:108-295 [139568] picpiclink
      15. 2p9e picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1psda1
        complexed with cit, nai, po4, so4; mutant
        1. region d:108-295 [139571] picpiclink
      16. 2p9g picpicxrefxrefxrefxref
        automatically matched to d1psda1
        complexed with nai, ser; mutant
        1. region a:108-295 [139574] picpiclink
      17. 2p9g picpicxrefxrefxrefxref
        automatically matched to d1psda1
        complexed with nai, ser; mutant
        1. region b:108-295 [139577] picpiclink
      18. 2pa3 picpicxrefxref
        automatically matched to d1psda1
        complexed with nai, ser; mutant
        1. region a:108-295 [139638] picpiclink
    2. Mycobacterium tuberculosis [TaxId: 1773] [141927] (2)
      SQ P0A544 98-281
      1. 1ygy picpicxrefxrefxrefxrefxrefxref
        complexed with tar
        1. region a:99-282 [123150] picpiclink
      2. 1ygy picpicxrefxrefxrefxrefxrefxref
        automatically matched to 1YGY A:99-282
        complexed with tar
        1. region b:99-282 [123154] picpiclink
  7. D-lactate dehydrogenase [51841]
    1. Lactobacillus helveticus [TaxId: 1587] [51842] (3)
      1. 1j4a picpicxref
        complexed with sul; mutant
        1. region a:104-300 [71502] picpiclink
        2. region b:104-300 [71504] picpiclink
        3. region c:104-300 [71506] picpiclink
        4. region d:104-300 [71508] picpiclink
      2. 1j49 picpicxref
        complexed with nad, so4
        1. region a:104-300 [71498] picpiclink
        2. region b:104-300 [71500] picpiclink
      3. 2dld picpicxref
        complexed with nad, oxm
        1. region a:104-300 [30099] picpiclink
        2. region b:104-300 [30100] picpiclink
  8. L-alanine dehydrogenase [51843]
    1. Phormidium lapideum [TaxId: 32060] [51844] (3)
      1. 1say picpicxref
        complexed with pyr
        1. region a:136-303 [30102] picpiclink
      2. 1pjc picpicxref
        complexed with nad
        1. region a:136-303 [30101] picpiclink
      3. 1pjb picpicxref
        1. region a:136-303 [30103] picpiclink
  9. Nicotinamide nucleotide transhydrogenase dI component [63937]
    L-alanine dehydrogenase homologue
    1. Rhodospirillum rubrum [TaxId: 1085] [63938] (28)
      1. 1l7d picpicxref
        1. region a:144-326 [77774] picpiclink
        2. region b:544-726 [77776] picpiclink
        3. region c:944-1126 [77778] picpiclink
        4. region d:1344-1526 [77780] picpiclink
      2. 1f8g picpicxref
        complexed with nad
        1. region a:144-326 [59695] picpiclink
        2. region b:144-326 [59697] picpiclink
        3. region c:144-326 [59699] picpiclink
        4. region d:144-326 [59701] picpiclink
      3. 2fsv picpicxrefxrefxref
        automatically matched to d1f8ga1
        complexed with gol, nad, nap; mutant
        1. region a:144-326 [134037] picpiclink
      4. 2fsv picpicxrefxrefxref
        automatically matched to d1f8ga1
        complexed with gol, nad, nap; mutant
        1. region b:144-326 [134039] picpiclink
      5. 1l7e picpicxref
        complexed with nai
        1. region a:144-326 [77782] picpiclink
        2. region b:544-726 [77784] picpiclink
        3. region c:944-1126 [77786] picpiclink
        4. region d:1344-1526 [77788] picpiclink
      6. 1u2g picpicxrefxrefxref
        automatically matched to d1f8ga1
        complexed with apr, gol, ndp
        1. region a:144-326 [119480] picpiclink
      7. 1u2g picpicxrefxrefxref
        automatically matched to d1f8ga1
        complexed with apr, gol, ndp
        1. region b:144-326 [119482] picpiclink
      8. 2oor picpicxrefxrefxref
        automatically matched to d1f8ga1
        complexed with gol, nad, txp
        1. region a:144-326 [139171] picpiclink
      9. 2oor picpicxrefxrefxref
        automatically matched to d1f8ga1
        complexed with gol, nad, txp
        1. region b:144-326 [139173] picpiclink
      10. 1u28 picpicxrefxrefxref
        automatically matched to d1f8ga1
        complexed with gol, nad, nap
        1. region a:144-326 [119468] picpiclink
      11. 1u28 picpicxrefxrefxref
        automatically matched to d1f8ga1
        complexed with gol, nad, nap
        1. region b:144-326 [119470] picpiclink
      12. 2oo5 picpicxrefxrefxref
        automatically matched to d1f8ga1
        complexed with nap, so4, txd
        1. region a:144-326 [139162] picpiclink
      13. 2oo5 picpicxrefxrefxref
        automatically matched to d1f8ga1
        complexed with nap, so4, txd
        1. region b:144-326 [139164] picpiclink
      14. 2fr8 picpicxrefxrefxref
        automatically matched to d1f8ga1
        complexed with nad, nap; mutant
        1. region a:144-326 [133973] picpiclink
      15. 2fr8 picpicxrefxrefxref
        automatically matched to d1f8ga1
        complexed with nad, nap; mutant
        1. region b:144-326 [133975] picpiclink
      16. 1ptj picpicxrefxref
        complexed with dIII component
        complexed with gol, nap, snd
        1. region a:144-326 [95099] picpiclink
        2. region b:144-326 [95101] picpiclink
      17. 1nm5 picpicxrefxref
        complexed with dIII component
        complexed with gol, nad, nap; mutant
        1. region a:144-326 [91968] picpiclink
        2. region b:144-326 [91970] picpiclink
      18. 1hzz picpicxrefxref
        complexed with dIII component
        complexed with nad, nap
        1. region a:144-326 [61470] picpiclink
        2. region b:144-326 [61472] picpiclink
      19. 1u2d picpicxrefxrefxref
        automatically matched to d1f8ga1
        complexed with gol, nad, ndp
        1. region a:144-326 [119475] picpiclink
      20. 1u2d picpicxrefxrefxref
        automatically matched to d1f8ga1
        complexed with gol, nad, ndp
        1. region b:144-326 [119477] picpiclink
      21. 2frd picpicxrefxrefxref
        automatically matched to d1f8ga1
        complexed with nad, nap; mutant
        1. region a:144-326 [133980] picpiclink
      22. 2frd picpicxrefxrefxref
        automatically matched to d1f8ga1
        complexed with nad, nap; mutant
        1. region b:144-326 [133982] picpiclink
      23. 1xlt picpicxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1f8ga1
        complexed with na, nad, ndp, suc
        1. region a:144-326 [122122] picpiclink
      24. 1xlt picpicxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1f8ga1
        complexed with na, nad, ndp, suc
        1. region b:144-326 [122124] picpiclink
      25. 1xlt picpicxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1f8ga1
        complexed with na, nad, ndp, suc
        1. region d:144-326 [122127] picpiclink
      26. 1xlt picpicxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1f8ga1
        complexed with na, nad, ndp, suc
        1. region e:144-326 [122129] picpiclink
      27. 1xlt picpicxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1f8ga1
        complexed with na, nad, ndp, suc
        1. region g:144-326 [122132] picpiclink
      28. 1xlt picpicxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1f8ga1
        complexed with na, nad, ndp, suc
        1. region h:144-326 [122134] picpiclink
  10. S-adenosylhomocystein hydrolase [51845]
    1. Human (Homo sapiens) [TaxId: 9606] [51846] (2)
      1. 1li4 picpicxref
        complexed with ipa, nah, noc
        1. region a:190-352 [84616] picpiclink
      2. 1a7a picpicxref
        complexed with adc, nah
        1. region a:190-352 [30104] picpiclink
        2. region b:190-352 [30105] picpiclink
    2. Rat (Rattus norvegicus) [TaxId: 10116] [51847] (17)
      1. 1b3r picpicxref
        complexed with nad; mutant
        1. region a:190-352 [30106] picpiclink
        2. region b:190-352 [30107] picpiclink
        3. region c:190-352 [30108] picpiclink
        4. region d:190-352 [30109] picpiclink
      2. 1k0u picpicxref
        complexed with dea, nad
        1. region a:190-352 [67970] picpiclink
        2. region b:190-352 [67972] picpiclink
        3. region c:190-352 [67974] picpiclink
        4. region d:190-352 [67976] picpiclink
        5. region e:190-352 [67978] picpiclink
        6. region f:190-352 [67980] picpiclink
        7. region g:190-352 [67982] picpiclink
        8. region h:190-352 [67984] picpiclink
      3. 1ky5 picpicxref
        complexed with ady, nai; mutant
        1. region a:190-352 [77620] picpiclink
        2. region b:1190-1352 [77622] picpiclink
        3. region c:2190-2352 [77624] picpiclink
        4. region d:3190-3352 [77626] picpiclink
      4. 1ky4 picpicxref
        complexed with nad
        1. region a:190-352 [77612] picpiclink
        2. region b:1190-1352 [77614] picpiclink
        3. region c:2190-2352 [77616] picpiclink
        4. region d:3190-3352 [77618] picpiclink
      5. 1xwf picpicxrefxrefxrefxref
        automatically matched to d1d4fa1
        complexed with adn, nad; mutant
        1. region a:190-352 [122392] picpiclink
      6. 1xwf picpicxrefxrefxrefxref
        automatically matched to d1d4fa1
        complexed with adn, nad; mutant
        1. region b:190-352 [122394] picpiclink
      7. 1xwf picpicxrefxrefxrefxref
        automatically matched to d1d4fa1
        complexed with adn, nad; mutant
        1. region c:190-352 [122396] picpiclink
      8. 1xwf picpicxrefxrefxrefxref
        automatically matched to d1d4fa1
        complexed with adn, nad; mutant
        1. region d:190-352 [122398] picpiclink
      9. 1d4f picpicxref
        complexed with adn, nad; mutant
        1. region a:190-352 [30110] picpiclink
        2. region b:190-352 [30111] picpiclink
        3. region c:190-352 [30112] picpiclink
        4. region d:190-352 [30113] picpiclink
      10. 2h5l picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1d4fa1
        complexed with 3dd, nad
        1. region a:190-352 [136151] picpiclink
      11. 2h5l picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1d4fa1
        complexed with 3dd, nad
        1. region b:190-352 [136153] picpiclink
      12. 2h5l picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1d4fa1
        complexed with 3dd, nad
        1. region c:190-352 [136155] picpiclink
      13. 2h5l picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1d4fa1
        complexed with 3dd, nad
        1. region d:190-352 [136157] picpiclink
      14. 2h5l picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1d4fa1
        complexed with 3dd, nad
        1. region e:190-352 [136159] picpiclink
      15. 2h5l picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1d4fa1
        complexed with 3dd, nad
        1. region f:190-352 [136161] picpiclink
      16. 2h5l picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1d4fa1
        complexed with 3dd, nad
        1. region g:190-352 [136163] picpiclink
      17. 2h5l picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1d4fa1
        complexed with 3dd, nad
        1. region h:190-352 [136165] picpiclink
    3. Plasmodium falciparum, isolate 3D7 [TaxId: 5833] [117431] (1)
      SQ P50250
      1. 1v8b picpicxref
        complexed with adn, nah
        1. region a:235-397 [113564] picpiclink
        2. region b:235-397 [113566] picpiclink
        3. region c:235-397 [113568] picpiclink
        4. region d:235-397 [113570] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk