Structural Classification of Proteins
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Family: Formate/glycerate dehydrogenases, NAD-domain

this domain interrupts the other domain which defines family

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: NAD(P)-binding Rossmann-fold domains [51734]
    core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
    The nucleotide-binding modes of this and the next two folds/superfamilies are similar
  4. Superfamily: NAD(P)-binding Rossmann-fold domains [51735]
    link to SUPERFAMILY database - Superfamily
  5. Family: Formate/glycerate dehydrogenases, NAD-domain [51830]
    this domain interrupts the other domain which defines family

Protein Domains:

  1. Formate dehydrogenase [51831]
    1. Pseudomonas sp., strain 101 [TaxId: 306] [51832] (2) picpic
  2. Putative formate dehydrogenase [51833]
    1. Archaeon Pyrobaculum aerophilum [TaxId: 13773] [51834] (1) picpic
  3. Transcription corepressor CtbP [82298]
    C-terminal binding protein 1; a dehydrogenase
    1. Human (Homo sapiens), Ctbp1 [TaxId: 9606] [82299] (1) picpic
    2. Rat (Rattus norvegicus), Ctbp3 [TaxId: 10116] [89529] (2) picpic
  4. D-2-hydroxyisocaproate dehydrogenase [51835]
    1. Lactobacillus casei [TaxId: 1582] [51836] (1) picpic
  5. D-glycerate dehydrogenase [51837]
    1. Hyphomicrobium methylovorum [TaxId: 84] [51838] (1) picpic
  6. Phosphoglycerate dehydrogenase [51839]
    has additional C-terminal domain of the ferredoxin fold
    1. Escherichia coli [TaxId: 562] [51840] (18) picpic
    2. Mycobacterium tuberculosis [TaxId: 1773] [141927] (2) picpic
      SQ P0A544 98-281
  7. D-lactate dehydrogenase [51841]
    1. Lactobacillus helveticus [TaxId: 1587] [51842] (3) picpic
  8. L-alanine dehydrogenase [51843]
    1. Phormidium lapideum [TaxId: 32060] [51844] (3) picpic
  9. Nicotinamide nucleotide transhydrogenase dI component [63937]
    L-alanine dehydrogenase homologue
    1. Rhodospirillum rubrum [TaxId: 1085] [63938] (28) picpic
  10. S-adenosylhomocystein hydrolase [51845]
    1. Human (Homo sapiens) [TaxId: 9606] [51846] (2) picpic
    2. Rat (Rattus norvegicus) [TaxId: 10116] [51847] (17) picpic
    3. Plasmodium falciparum, isolate 3D7 [TaxId: 5833] [117431] (1) picpic
      SQ P50250
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk