Structural Classification of Proteins
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Family: LDH N-terminal domain-like

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: NAD(P)-binding Rossmann-fold domains [51734]
    core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
    The nucleotide-binding modes of this and the next two folds/superfamilies are similar
  4. Superfamily: NAD(P)-binding Rossmann-fold domains [51735]
    link to SUPERFAMILY database - Superfamily
  5. Family: LDH N-terminal domain-like [51848]

Protein Domains:

  1. Malate dehydrogenase [51849]
    1. Pig (Sus scrofa) [TaxId: 9823] [51850] (3)
      1. 1mld picpicxref
        complexed with cit
        1. region a:1-144 [30122] picpiclink
        2. region b:1-144 [30123] picpiclink
        3. region c:1-144 [30124] picpiclink
        4. region d:1-144 [30125] picpiclink
      2. 5mdh picpicxref
        complexed with mak, nad
        1. region a:1-154 [30126] picpiclink
        2. region b:1-154 [30127] picpiclink
      3. 4mdh picpicxref
        complexed with nad, sul
        1. region a:1-154 [30128] picpiclink
        2. region b:1-154 [30129] picpiclink
    2. Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558] [51851] (1)
      1. 7mdh picpicxref
        complexed with zn; mutant
        1. region a:23-197 [30130] picpiclink
        2. region b:21-197 [30131] picpiclink
        3. region c:23-197 [30132] picpiclink
        4. region d:21-197 [30133] picpiclink
    3. Flaveria bidentis, chloroplast [TaxId: 4224] [51852] (1)
      1. 1civ picpicxref
        complexed with nap
        1. region a:12-193 [30134] picpiclink
    4. Escherichia coli [TaxId: 562] [51853] (8)
      1. 2cmd picpicxref
        complexed with cit
        1. region a:1-145 [30135] picpiclink
      2. 1emd picpicxref
        complexed with cit, nad
        1. region a:1-145 [30136] picpiclink
      3. 1ib6 picpicxref
        complexed with nad, so4; mutant
        1. region a:1-145 [62146] picpiclink
        2. region b:1-145 [62148] picpiclink
        3. region c:1-145 [62150] picpiclink
        4. region d:1-145 [62152] picpiclink
      4. 2pwz picpicxrefxrefxrefxref
        automatically matched to d1emd_1
        1. region a:1-145 [139766] picpiclink
      5. 2pwz picpicxrefxrefxrefxref
        automatically matched to d1emd_1
        1. region c:1-145 [139768] picpiclink
      6. 2pwz picpicxrefxrefxrefxref
        automatically matched to d1emd_1
        1. region e:1-145 [139770] picpiclink
      7. 2pwz picpicxrefxrefxrefxref
        automatically matched to d1emd_1
        1. region g:1-145 [139772] picpiclink
      8. 1ie3 picpicxref
        complexed with nad, pyr; mutant
        1. region a:1-145 [62304] picpiclink
        2. region b:1-145 [62306] picpiclink
        3. region c:1-145 [62308] picpiclink
        4. region d:1-145 [62310] picpiclink
    5. Thermus flavus [TaxId: 274] [51854] (2)
      1. 1bdm picpicxref
        complexed with nax; mutant
        1. region a:0-154 [30137] picpiclink
        2. region b:0-154 [30138] picpiclink
      2. 1bmd picpicxref
        complexed with nad
        1. region a:0-154 [30139] picpiclink
        2. region b:0-154 [30140] picpiclink
    6. Thermus thermophilus [TaxId: 274] [82300] (9)
      identical sequence to that from the Thermus flavus enzyme
      1. 1y7t picpicxrefxref
        automatically matched to d1iz9a1
        complexed with ndp, trs
        1. region a:0-153 [122718] picpiclink
      2. 1y7t picpicxrefxref
        automatically matched to d1iz9a1
        complexed with ndp, trs
        1. region b:0-153 [122720] picpiclink
      3. 1wze picpicxrefxref
        automatically matched to d1iz9a1
        complexed with nad; mutant
        1. region a:0-153 [121495] picpiclink
      4. 1wze picpicxrefxref
        automatically matched to d1iz9a1
        complexed with nad; mutant
        1. region b:0-153 [121497] picpiclink
      5. 1wzi picpicxrefxref
        automatically matched to d1iz9a1
        complexed with ndp; mutant
        1. region a:0-153 [121503] picpiclink
      6. 1wzi picpicxrefxref
        automatically matched to d1iz9a1
        complexed with ndp; mutant
        1. region b:0-153 [121505] picpiclink
      7. 1iz9 picpicxref
        1. region a:1-154 [76984] picpiclink
        2. region b:1-154 [76986] picpiclink
      8. 2cvq picpicxrefxref
        automatically matched to d1iz9a1
        complexed with nap, trs
        1. region a:0-153 [130885] picpiclink
      9. 2cvq picpicxrefxref
        automatically matched to d1iz9a1
        complexed with nap, trs
        1. region b:0-153 [130887] picpiclink
    7. Archaeon Haloarcula marismortui [TaxId: 2238] [51855] (17)
      1. 2j5k picpicxrefxrefxrefxref
        automatically matched to d1hlpa1
        complexed with cl
        1. region a:22-163 [138037] picpiclink
      2. 2j5k picpicxrefxrefxrefxref
        automatically matched to d1hlpa1
        complexed with cl
        1. region b:22-163 [138039] picpiclink
      3. 2j5k picpicxrefxrefxrefxref
        automatically matched to d1hlpa1
        complexed with cl
        1. region c:22-163 [138041] picpiclink
      4. 2j5k picpicxrefxrefxrefxref
        automatically matched to d1hlpa1
        complexed with cl
        1. region d:22-163 [138043] picpiclink
      5. 1o6z picpicxref
        complexed with cl, nad; mutant
        1. region a:22-162 [81107] picpiclink
        2. region b:22-162 [81109] picpiclink
        3. region c:22-162 [81111] picpiclink
        4. region d:22-162 [81113] picpiclink
      6. 2j5q picpicxrefxrefxrefxref
        automatically matched to d1hlpa1
        complexed with cl
        1. region a:22-163 [138051] picpiclink
      7. 2j5q picpicxrefxrefxrefxref
        automatically matched to d1hlpa1
        complexed with cl
        1. region b:22-163 [138053] picpiclink
      8. 2j5q picpicxrefxrefxrefxref
        automatically matched to d1hlpa1
        complexed with cl
        1. region c:22-163 [138055] picpiclink
      9. 2j5q picpicxrefxrefxrefxref
        automatically matched to d1hlpa1
        complexed with cl
        1. region d:22-163 [138057] picpiclink
      10. 2j5r picpicxrefxrefxrefxref
        automatically matched to d1hlpa1
        complexed with cl
        1. region a:22-163 [138059] picpiclink
      11. 2j5r picpicxrefxrefxrefxref
        automatically matched to d1hlpa1
        complexed with cl
        1. region b:22-163 [138061] picpiclink
      12. 2j5r picpicxrefxrefxrefxref
        automatically matched to d1hlpa1
        complexed with cl
        1. region c:22-163 [138063] picpiclink
      13. 2j5r picpicxrefxrefxrefxref
        automatically matched to d1hlpa1
        complexed with cl
        1. region d:22-163 [138065] picpiclink
      14. 2hlp picpicxref
        1. region a:22-162 [30141] picpiclink
        2. region b:22-162 [30142] picpiclink
      15. 1d3a picpicxref
        complexed with cl, na
        1. region a:22-162 [30143] picpiclink
        2. region b:22-162 [30144] picpiclink
      16. 1gt2 picpicxref
        complexed with cl, na, nad; mutant
        1. region a:22-162 [76338] picpiclink
        2. region b:22-162 [76340] picpiclink
      17. 1hlp picpicxref
        complexed with nad
        1. region a:21-162 [30145] picpiclink
        2. region b:21-162 [30146] picpiclink
    8. Aquaspirillum arcticum [TaxId: 87645] [51856] (3)
      1. 1b8p picpicxref
        1. region a:3-158 [30147] picpiclink
      2. 1b8v picpicxref
        complexed with nah
        1. region a:3-158 [30148] picpiclink
      3. 1b8u picpicxref
        complexed with nad, oaa
        1. region a:3-158 [30149] picpiclink
    9. Chloroflexus aurantiacus [TaxId: 1108] [69415] (7)
      SQ P80040
      1. 1uxj picpicxref
        complexed with cd, cl, na, nad; mutant
        1. region a:2-143 [108112] picpiclink
        2. region c:2-143 [108114] picpiclink
      2. 1uxk picpicxref
        complexed with cd, cl, na, nad; mutant
        1. region a:2-143 [108116] picpiclink
        2. region c:2-143 [108118] picpiclink
      3. 1ur5 picpicxref
        complexed with cd, cl, na, nad; mutant
        1. region a:2-143 [99807] picpiclink
        2. region c:2-143 [99809] picpiclink
      4. 1guy picpicxref
        complexed with cd, nad
        1. region a:1-143 [65582] picpiclink
        2. region c:1-143 [65584] picpiclink
      5. 1uxg picpicxref
        complexed with fmr, nad; mutant
        1. region a:2-143 [108100] picpiclink
        2. region b:2-143 [108102] picpiclink
      6. 1uxh picpicxref
        complexed with fmr, nad; mutant
        1. region a:2-143 [108104] picpiclink
        2. region b:2-143 [108106] picpiclink
      7. 1uxi picpicxref
        complexed with fmr, na, nad; mutant
        1. region a:2-143 [108108] picpiclink
        2. region b:2-143 [108110] picpiclink
    10. Chlorobium tepidum [TaxId: 1097] [69416] (1)
      1. 1gv0 picpicxref
        complexed with nad
        1. region a:1-142 [65594] picpiclink
        2. region b:1-142 [65596] picpiclink
    11. Chlorobium vibrioforme [TaxId: 1098] [69417] (2)
      1. 1guz picpicxref
        complexed with nad
        1. region a:1-142 [65586] picpiclink
        2. region b:1-142 [65588] picpiclink
        3. region c:1-142 [65590] picpiclink
        4. region d:1-142 [65592] picpiclink
      2. 1gv1 picpicxref
        1. region a:1-142 [65598] picpiclink
        2. region b:1-142 [65600] picpiclink
        3. region c:1-142 [65602] picpiclink
        4. region d:1-142 [65604] picpiclink
    12. Archaeon Archaeoglobus fulgidus [TaxId: 2234] [110427] (2)
      SQ O08349
      1. 1oju picpicxref
        complexed with ena, nca, so4
        1. region a:22-163 [103990] picpiclink
      2. 1ojs picpicxref
        complexed with na, nad, so4
        1. region a:22-163 [103988] picpiclink
  2. L-2-hydroxyisocapronate dehydrogenase, L-HICDH [51857]
    1. Lactobacillus confusus [TaxId: 1583] [51858] (1)
      1. 1hyh picpicxref
        complexed with nad, so4
        1. region a:21-166 [30150] picpiclink
        2. region b:21-166 [30151] picpiclink
        3. region c:21-166 [30152] picpiclink
        4. region d:21-166 [30153] picpiclink
  3. Lactate dehydrogenase [51859]
    1. Pig (Sus scrofa) [TaxId: 9823] [51860] (3)
      1. 9ldt picpicxref
        complexed with nad, oxm, so4
        1. region a:1-162 [30154] picpiclink
        2. region b:1-162 [30155] picpiclink
      2. 9ldb picpicxref
        complexed with nad, oxm, so4
        1. region a:1-162 [30156] picpiclink
        2. region b:1-162 [30157] picpiclink
      3. 5ldh picpicxref
        complexed with cit, nal
        1. region a:1-162 [30158] picpiclink
    2. Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606] [63939] (2)
      1. 1i0z picpicxref
        complexed with nai, oxm
        1. region a:1-160 [61495] picpiclink
        2. region b:1-160 [61497] picpiclink
      2. 1t2f picpicxref
        complexed with nad, oxq; mutant
        1. region a:1-160 [99088] picpiclink
        2. region b:1-160 [99090] picpiclink
        3. region c:1-160 [99092] picpiclink
        4. region d:1-160 [99094] picpiclink
    3. Human (Homo sapiens), muscle isoform (M chain) [TaxId: 9606] [63940] (1)
      1. 1i10 picpicxref
        complexed with act, nai, oxm
        1. region a:1-159 [61499] picpiclink
        2. region b:1-159 [61501] picpiclink
        3. region c:1-159 [61503] picpiclink
        4. region d:1-159 [61505] picpiclink
        5. region e:1-159 [61507] picpiclink
        6. region f:1-159 [61509] picpiclink
        7. region g:1-159 [61511] picpiclink
        8. region h:1-159 [61513] picpiclink
    4. Mouse (Mus musculus) [TaxId: 10090] [51861] (4)
      1. 2ldx picpicxrefxrefxrefxref
        1. region a:1-159 [30159] picpiclink
      2. 2ldx picpicxrefxrefxrefxref
        duplicate of 2LDX 1-159
        1. region b:1-159 [118642] picpiclink
      3. 2ldx picpicxrefxrefxrefxref
        duplicate of 2LDX 1-159
        1. region c:1-159 [118644] picpiclink
      4. 2ldx picpicxrefxrefxrefxref
        duplicate of 2LDX 1-159
        1. region d:1-159 [118646] picpiclink
    5. Dogfish (Squalus acanthias) [TaxId: 7797] [51862] (3)
      1. 1ldm picpicxref
        complexed with nad, oxm
        1. region a:1-160 [30160] picpiclink
      2. 6ldh picpicxref
        complexed with so4
        1. region a:1-160 [30161] picpiclink
      3. 8ldh picpicxref
        complexed with cit
        1. region a:1-160 [30162] picpiclink
    6. Malaria parasite (Plasmodium falciparum) [TaxId: 5833] [51863] (9)
      1. 1t2d picpicxref
        complexed with gol, nad, oxl
        1. region a:1-150 [99084] picpiclink
      2. 1t24 picpicxref
        complexed with gol, nad, oxq
        1. region a:18-163 [99069] picpiclink
      3. 1t26 picpicxref
        complexed with gbd, nai
        1. region a:19-163 [99073] picpiclink
      4. 1t25 picpicxref
        complexed with gag, gol, nai
        1. region a:18-163 [99071] picpiclink
      5. 1t2e picpicxref
        complexed with gol, nai, oxm; mutant
        1. region a:18-163 [99086] picpiclink
      6. 1ldg picpicxref
        complexed with nad, oxm
        1. region a:18-163 [30165] picpiclink
      7. 1t2c picpicxref
        complexed with gol, nai
        1. region a:18-163 [99082] picpiclink
      8. 1cet picpicxref
        complexed with clq
        1. region a:18-163 [30164] picpiclink
      9. 1ceq picpicxref
        1. region a:19-163 [30163] picpiclink
    7. Plasmodium berghei [TaxId: 5821] [102165] (7)
      1. 2a94 picpicxref
        automatically matched to d1oc4a1
        complexed with ap0
        1. region a:18-163 [126423] picpiclink
      2. 1u4o picpicxref
        automatically matched to d1oc4a1
        complexed with mpd, ndd
        1. region a:18-163 [119527] picpiclink
      3. 1xiv picpicxref
        automatically matched to d1oc4a1
        complexed with gol, rb2
        1. region a:18-163 [122018] picpiclink
      4. 1u5a picpicxref
        automatically matched to d1oc4a1
        complexed with bik
        1. region a:18-163 [119532] picpiclink
      5. 1u4s picpicxref
        automatically matched to d1oc4a1
        complexed with bih
        1. region a:18-163 [119529] picpiclink
      6. 1u5c picpicxref
        automatically matched to d1oc4a1
        complexed with bik, nad
        1. region a:18-163 [119534] picpiclink
      7. 1oc4 picpicxref
        complexed with gol, nad, oxm
        1. region a:18-163 [92770] picpiclink
        2. region b:18-163 [92772] picpiclink
    8. Toxoplasma gondii [TaxId: 5811] [102166] (4)
      1. 1pzg picpicxref
        complexed with a3d, so4
        1. region a:14-163 [95425] picpiclink
        2. region b:14-163 [95427] picpiclink
        3. region c:15-163 [95429] picpiclink
        4. region d:14-163 [95431] picpiclink
      2. 1pzh picpicxref
        complexed with nad, oxl
        1. region a:14-163 [95433] picpiclink
        2. region b:14-163 [95435] picpiclink
        3. region c:14-163 [95437] picpiclink
        4. region d:14-163 [95439] picpiclink
      3. 1pze picpicxref
        1. region a:14-163 [95415] picpiclink
      4. 1pzf picpicxref
        complexed with a3d, oxl
        1. region a:14-163 [95417] picpiclink
        2. region b:14-163 [95419] picpiclink
        3. region c:14-163 [95421] picpiclink
        4. region d:14-163 [95423] picpiclink
    9. Bacillus stearothermophilus [TaxId: 1422] [51864] (9)
      1. 1ldn picpicxref
        complexed with fbp, nad, oxm
        1. region a:15-162 [30166] picpiclink
        2. region b:15-162 [30167] picpiclink
        3. region c:15-162 [30168] picpiclink
        4. region d:15-162 [30169] picpiclink
        5. region e:15-162 [30170] picpiclink
        6. region f:15-162 [30171] picpiclink
        7. region g:15-162 [30172] picpiclink
        8. region h:15-162 [30173] picpiclink
      2. 1ldb picpicxrefxrefxrefxref
        complexed with so4
        1. region a:15-162 [30174] picpiclink
      3. 1ldb picpicxrefxrefxrefxref
        duplicate of 1LDB 15-162
        complexed with so4
        1. region b:15-162 [118523] picpiclink
      4. 1ldb picpicxrefxrefxrefxref
        duplicate of 1LDB 15-162
        complexed with so4
        1. region c:15-162 [118525] picpiclink
      5. 1ldb picpicxrefxrefxrefxref
        duplicate of 1LDB 15-162
        complexed with so4
        1. region d:15-162 [118527] picpiclink
      6. 2ldb picpicxrefxrefxrefxref
        complexed with fbp, nad, so4
        1. region a:15-162 [30175] picpiclink
      7. 2ldb picpicxrefxrefxrefxref
        duplicate of 2LDB 15-162
        complexed with fbp, nad, so4
        1. region b:15-162 [118636] picpiclink
      8. 2ldb picpicxrefxrefxrefxref
        duplicate of 2LDB 15-162
        complexed with fbp, nad, so4
        1. region c:15-162 [118638] picpiclink
      9. 2ldb picpicxrefxrefxrefxref
        duplicate of 2LDB 15-162
        complexed with fbp, nad, so4
        1. region d:15-162 [118640] picpiclink
    10. Lactobacillus casei [TaxId: 1582] [51865] (1)
      1. 1llc picpicxref
        complexed with fbp, so4
        1. region a:13-164 [30176] picpiclink
    11. Lactobacillus pentosus [TaxId: 1589] [69418] (1)
      1. 1ez4 picpicxref
        complexed with nad
        1. region a:16-162 [64917] picpiclink
        2. region b:16-162 [64919] picpiclink
        3. region c:16-162 [64921] picpiclink
        4. region d:16-162 [64923] picpiclink
    12. Bifidobacterium longum, strain am101-2 [TaxId: 216816] [51866] (2)
      1. 1lld picpicxref
        complexed with nad; mutant
        1. region a:7-149 [30177] picpiclink
        2. region b:7-149 [30178] picpiclink
      2. 1lth picpicxref
        complexed with fbp, nad, oxm; mutant
        1. region r:7-149 [30179] picpiclink
        2. region t:7-149 [30180] picpiclink
    13. Thermotoga maritima [TaxId: 2336] [51867] (1)
      1. 1a5z picpicxref
        complexed with cd, fbp, nad, oxm
        1. region a:22-163 [30181] picpiclink
    14. Clostridium thermocellum [TaxId: 1515] [117432] (1)
      SQ Q4CDK5
      1. 1y6j picpicxref
        Structural genomics target
        1. region a:7-148 [116507] picpiclink
  4. MJ0490, lactate/malate dehydrogenase [63941]
    1. Archaeon Methanococcus jannaschii [TaxId: 2190] [63942] (2)
      1. 1hye picpicxref
        complexed with nap
        1. region a:1-145 [61400] picpiclink
      2. 1hyg picpicxref
        complexed with nap
        1. region a:1-145 [61402] picpiclink
        2. region b:1-145 [61404] picpiclink
  5. Alpha-glucosidase AglA [89530]
    1. Thermotoga maritima [TaxId: 2336] [89531] (1)
      TM1834
      1. 1obb picpicxref
        complexed with csw, mal, nad
        1. region a:2-172 [86760] picpiclink
        2. region b:4-172 [86762] picpiclink
  6. Putative alpha-glucosidase TM0752 [102167]
    1. Thermotoga maritima [TaxId: 2336] [102168] (1)
      1. 1vjt picpicxref
        structural genomics
        complexed with nad
        1. region a:-1-191 [100833] picpiclink
  7. Maltose-6'-phosphate glucosidase GlvA [102169]
    1. Bacillus subtilis [TaxId: 1423] [102170] (1)
      SQ P54716
      1. 1u8x picpicxref
        complexed with g6p, mn, nad
        1. region x:3-169 [107741] picpiclink
  8. 6-phospho-beta-glucosidase [110428]
    1. Bacillus stearothermophilus [TaxId: 1422] [110429] (1)
      SQ P84135
      1. 1s6y picpicxref
        1. region a:4-172 [105314] picpiclink
    2. Thermotoga maritima [TaxId: 2336] [110430] (3)
      SQ Q9X108
      1. 1up7 picpicxref
        complexed with g6p, nad, so4
        1. region a:1-162 [113374] picpiclink
        2. region b:1-162 [113376] picpiclink
        3. region c:1-162 [113378] picpiclink
        4. region d:1-162 [113380] picpiclink
        5. region e:1-162 [113382] picpiclink
        6. region f:1-162 [113384] picpiclink
        7. region g:1-162 [113386] picpiclink
        8. region h:1-162 [113388] picpiclink
      2. 1up6 picpicxref
        complexed with g6p, mn, nad, so4
        1. region a:2-162 [107976] picpiclink
        2. region b:2-162 [107978] picpiclink
        3. region c:2-162 [107980] picpiclink
        4. region d:2-162 [107982] picpiclink
        5. region e:2-162 [107984] picpiclink
        6. region f:2-162 [107986] picpiclink
        7. region g:2-162 [107988] picpiclink
        8. region h:2-162 [107990] picpiclink
      3. 1up4 picpicxref
        1. region a:1-162 [113358] picpiclink
        2. region b:1-162 [113360] picpiclink
        3. region c:1-162 [113362] picpiclink
        4. region d:1-162 [113364] picpiclink
        5. region e:1-162 [113366] picpiclink
        6. region f:1-162 [113368] picpiclink
        7. region g:1-162 [113370] picpiclink
        8. region h:1-162 [113372] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
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